assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_012934635.1_ASM1293463v1	NZ_CP051706	Escherichia coli strain SCU-124 chromosome, complete genome	1	2277504-2277627	1	CRISPRCasFinder	no		cas3,csa3,DEDDh,c2c9_V-U4,DinG	Orphan	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,c2c9_V-U4,DinG	NA,NA|30aa|down_5|NZ_CP051706.1_2286523_2286613_+	NA|79aa|up_9|NZ_CP051706.1_2266420_2266657_-	PRK15396, PRK15396, major outer membrane lipoprotein	NA|471aa|up_8|NZ_CP051706.1_2266967_2268380_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_7|NZ_CP051706.1_2268925_2269135_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|701aa|up_6|NZ_CP051706.1_2270238_2272341_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|213aa|up_5|NZ_CP051706.1_2272353_2272992_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP051706.1_2273055_2273724_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP051706.1_2273720_2274506_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP051706.1_2274509_2275322_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP051706.1_2275333_2276938_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP051706.1_2277063_2277369_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP051706.1_2277941_2279198_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|383aa|down_1|NZ_CP051706.1_2281507_2282656_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_2|NZ_CP051706.1_2282946_2284158_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_3|NZ_CP051706.1_2284270_2285203_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_4|NZ_CP051706.1_2285199_2286225_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_5|NZ_CP051706.1_2286523_2286613_+	NA	NA|390aa|down_6|NZ_CP051706.1_2286778_2287948_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_7|NZ_CP051706.1_2288093_2288675_-	PRK10543, PRK10543, superoxide dismutase [Fe]	NA|272aa|down_8|NZ_CP051706.1_2288802_2289618_-	pfam00877, NLPC_P60, NlpC/P60 family	NA|116aa|down_9|NZ_CP051706.1_2289952_2290300_+	PRK10824, PRK10824, Grx4 family monothiol glutaredoxin
GCF_012934635.1_ASM1293463v1	NZ_CP051706	Escherichia coli strain SCU-124 chromosome, complete genome	2	2879770-2879861	2	CRISPRCasFinder	no		cas3,csa3,DEDDh,c2c9_V-U4,DinG	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,c2c9_V-U4,DinG	NA|70aa|up_9|NZ_CP051706.1_2869020_2869230_-,NA	NA|70aa|up_9|NZ_CP051706.1_2869020_2869230_-	NA	NA|1321aa|up_8|NZ_CP051706.1_2869284_2873247_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_CP051706.1_2873286_2873925_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_CP051706.1_2874212_2875304_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP051706.1_2875303_2875996_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP051706.1_2876007_2876394_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP051706.1_2876401_2877202_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP051706.1_2877211_2877802_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP051706.1_2877812_2878307_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP051706.1_2878327_2879656_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP051706.1_2880284_2880881_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP051706.1_2880901_2881129_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP051706.1_2881166_2882408_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|307aa|down_3|NZ_CP051706.1_2882932_2883853_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_4|NZ_CP051706.1_2883852_2884158_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_5|NZ_CP051706.1_2884412_2885012_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_6|NZ_CP051706.1_2885008_2887555_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_7|NZ_CP051706.1_2887554_2888727_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_8|NZ_CP051706.1_2888856_2889549_+	PRK10766, PRK10766, two-component system response regulator TorR	NA|343aa|down_9|NZ_CP051706.1_2889521_2890550_-	PRK10936, PRK10936, TMAO reductase system periplasmic protein TorT; Provisional
GCF_012934635.1_ASM1293463v1	NZ_CP051706	Escherichia coli strain SCU-124 chromosome, complete genome	3	3001501-3001583	3	CRISPRCasFinder	no		cas3,csa3,DEDDh,c2c9_V-U4,DinG	Orphan	ATCTGCCTGTACGGCAGTGAACT	23	0	0	NA	NA	I-F	1	1	Orphan	cas3,csa3,DEDDh,c2c9_V-U4,DinG	NA,NA	NA|431aa|up_9|NZ_CP051706.1_2986494_2987787_-	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|448aa|up_8|NZ_CP051706.1_2987877_2989221_-	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|204aa|up_7|NZ_CP051706.1_2989231_2989843_-	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|1369aa|up_6|NZ_CP051706.1_2990001_2994108_-	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|165aa|up_5|NZ_CP051706.1_2994242_2994737_-	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|322aa|up_4|NZ_CP051706.1_2995280_2996246_+	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|589aa|up_3|NZ_CP051706.1_2996368_2998135_+	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|574aa|up_2|NZ_CP051706.1_2998135_2999857_+	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|235aa|up_1|NZ_CP051706.1_2999901_3000606_+	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|73aa|up_0|NZ_CP051706.1_3000890_3001109_+	PRK00276, infA, translation initiation factor IF-1; Validated	NA|759aa|down_0|NZ_CP051706.1_3001794_3004071_-	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|107aa|down_1|NZ_CP051706.1_3004101_3004422_-	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|75aa|down_2|NZ_CP051706.1_3004744_3004969_+	PRK09937, PRK09937, cold shock-like protein CspD	NA|649aa|down_3|NZ_CP051706.1_3005041_3006988_-	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|372aa|down_4|NZ_CP051706.1_3006984_3008100_-	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|317aa|down_5|NZ_CP051706.1_3008256_3009207_+	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|553aa|down_6|NZ_CP051706.1_3009203_3010862_-	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|232aa|down_7|NZ_CP051706.1_3011286_3011982_+	PRK05420, PRK05420, aquaporin Z; Provisional	NA|300aa|down_8|NZ_CP051706.1_3012301_3013201_+	COG2431, COG2431, Predicted membrane protein [Function unknown]	NA|551aa|down_9|NZ_CP051706.1_3013344_3014997_+	PRK05290, PRK05290, hybrid cluster protein; Provisional
GCF_012934635.1_ASM1293463v1	NZ_CP051706	Escherichia coli strain SCU-124 chromosome, complete genome	4	3885257-3885389	1	PILER-CR	no		cas3,csa3,DEDDh,c2c9_V-U4,DinG	Orphan	ATCACCAATATTGAAAA	17	0	0	NA	NA	NA	2	2	Orphan	cas3,csa3,DEDDh,c2c9_V-U4,DinG	NA,NA	NA|105aa|up_9|NZ_CP051706.1_3876628_3876943_-	pfam01845, CcdB, CcdB protein	NA|78aa|up_8|NZ_CP051706.1_3876945_3877179_-	COG5302, COG5302, Post-segregation antitoxin (ccd killing mechanism protein) encoded by the F plasmid [General function prediction only]	NA|160aa|up_7|NZ_CP051706.1_3877264_3877744_-	PRK10769, folA, type 3 dihydrofolate reductase	NA|621aa|up_6|NZ_CP051706.1_3877935_3879798_-	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|177aa|up_5|NZ_CP051706.1_3879790_3880321_-	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF	NA|444aa|up_4|NZ_CP051706.1_3880428_3881760_-	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|96aa|up_3|NZ_CP051706.1_3881818_3882106_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_2|NZ_CP051706.1_3882102_3883389_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_1|NZ_CP051706.1_3883439_3884381_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_0|NZ_CP051706.1_3884395_3885166_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|down_0|NZ_CP051706.1_3885638_3887153_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|down_1|NZ_CP051706.1_3887183_3888326_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|down_2|NZ_CP051706.1_3888454_3889672_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|518aa|down_3|NZ_CP051706.1_3889744_3891298_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|down_4|NZ_CP051706.1_3891406_3892192_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|down_5|NZ_CP051706.1_3892197_3892788_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_6|NZ_CP051706.1_3892906_3893302_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|1074aa|down_7|NZ_CP051706.1_3893562_3896784_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_8|NZ_CP051706.1_3896801_3897950_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|274aa|down_9|NZ_CP051706.1_3898405_3899227_-	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]
GCF_012934635.1_ASM1293463v1	NZ_CP051706	Escherichia coli strain SCU-124 chromosome, complete genome	5	4584673-4584806	4	CRISPRCasFinder	no		cas3,csa3,DEDDh,c2c9_V-U4,DinG	Orphan	ACGGTTCAGAACTTTTGTAGGCCCGATAAGACGCGGCAGCGT	42	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,c2c9_V-U4,DinG	NA,NA	NA|329aa|up_9|NZ_CP051706.1_4569011_4569998_-	PRK11768, PRK11768, serine/threonine protein kinase	NA|90aa|up_8|NZ_CP051706.1_4570074_4570344_-	pfam06288, DUF1040, Protein of unknown function (DUF1040)	NA|195aa|up_7|NZ_CP051706.1_4570413_4570998_+	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|176aa|up_6|NZ_CP051706.1_4570979_4571507_+	PRK10751, PRK10751, molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional	NA|182aa|up_5|NZ_CP051706.1_4577089_4577635_-	PRK11104, hemG, menaquinone-dependent protoporphyrinogen IX dehydrogenase	NA|484aa|up_4|NZ_CP051706.1_4577646_4579098_-	PRK10750, PRK10750, Trk system potassium transporter TrkH	NA|205aa|up_3|NZ_CP051706.1_4579136_4579751_-	PRK11568, PRK11568, IMPACT family protein	NA|444aa|up_2|NZ_CP051706.1_4579750_4581082_-	PRK13607, PRK13607, proline dipeptidase; Provisional	NA|730aa|up_1|NZ_CP051706.1_4581271_4583461_+	PRK11730, fadB, fatty acid oxidation complex subunit alpha FadB	NA|388aa|up_0|NZ_CP051706.1_4583470_4584634_+	PRK08947, fadA, 3-ketoacyl-CoA thiolase; Reviewed	NA|234aa|down_0|NZ_CP051706.1_4584906_4585608_-	PRK08051, fre, FMN reductase; Validated	NA|498aa|down_1|NZ_CP051706.1_4585653_4587147_-	PRK10922, PRK10922, 4-hydroxy-3-polyprenylbenzoate decarboxylase	NA|163aa|down_2|NZ_CP051706.1_4587313_4587802_+	PRK09014, rfaH, transcription/translation regulatory transformer protein RfaH	NA|261aa|down_3|NZ_CP051706.1_4587798_4588581_-	PRK10425, PRK10425, 3'-5' ssDNA/RNA exonuclease TatD	NA|259aa|down_4|NZ_CP051706.1_4588622_4589399_-	PRK10921, PRK10921, Sec-independent protein translocase subunit TatC	NA|172aa|down_5|NZ_CP051706.1_4589401_4589917_-	PRK01770, PRK01770, Sec-independent protein translocase subunit TatB	NA|90aa|down_6|NZ_CP051706.1_4589920_4590190_-	PRK03554, tatA, Sec-independent protein translocase subunit TatA	NA|547aa|down_7|NZ_CP051706.1_4590268_4591909_-	PRK04750, ubiB, putative ubiquinone biosynthesis protein UbiB; Reviewed	NA|202aa|down_8|NZ_CP051706.1_4591905_4592511_-	COG3165, COG3165, Uncharacterized protein conserved in bacteria [Function unknown]	NA|252aa|down_9|NZ_CP051706.1_4592524_4593280_-	PRK00216, ubiE, bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE
