assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_012934555.1_ASM1293455v1	NZ_CP051719	Escherichia coli strain SCU-116 chromosome, complete genome	1	2972518-2972719	1	PILER-CR	no		cas3,DEDDh,DinG,c2c9_V-U4,csa3,WYL,cas1,cas3f,cas8f,cas7f,cas6f	Orphan	GTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAA	36	0	0	NA	NA	NA	2	2	Orphan	cas3,DEDDh,DinG,c2c9_V-U4,csa3,WYL,cas1,cas3f,cas8f,cas7f,cas6f	NA,NA	NA|252aa|up_9|NZ_CP051719.1_2964067_2964823_+	PRK00216, ubiE, bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	NA|202aa|up_8|NZ_CP051719.1_2964836_2965442_+	COG3165, COG3165, Uncharacterized protein conserved in bacteria [Function unknown]	NA|547aa|up_7|NZ_CP051719.1_2965438_2967079_+	PRK04750, ubiB, putative ubiquinone biosynthesis protein UbiB; Reviewed	NA|90aa|up_6|NZ_CP051719.1_2967157_2967427_+	PRK03554, tatA, Sec-independent protein translocase subunit TatA	NA|172aa|up_5|NZ_CP051719.1_2967430_2967946_+	PRK01770, PRK01770, Sec-independent protein translocase subunit TatB	NA|259aa|up_4|NZ_CP051719.1_2967948_2968725_+	PRK10921, PRK10921, Sec-independent protein translocase subunit TatC	NA|261aa|up_3|NZ_CP051719.1_2968766_2969549_+	PRK10425, PRK10425, 3'-5' ssDNA/RNA exonuclease TatD	NA|163aa|up_2|NZ_CP051719.1_2969545_2970034_-	PRK09014, rfaH, transcription/translation regulatory transformer protein RfaH	NA|498aa|up_1|NZ_CP051719.1_2970200_2971694_+	PRK10922, PRK10922, 4-hydroxy-3-polyprenylbenzoate decarboxylase	NA|234aa|up_0|NZ_CP051719.1_2971739_2972441_+	PRK08051, fre, FMN reductase; Validated	NA|388aa|down_0|NZ_CP051719.1_2972723_2973887_-	PRK08947, fadA, 3-ketoacyl-CoA thiolase; Reviewed	NA|730aa|down_1|NZ_CP051719.1_2973896_2976086_-	PRK11730, fadB, fatty acid oxidation complex subunit alpha FadB	NA|444aa|down_2|NZ_CP051719.1_2976275_2977607_+	PRK13607, PRK13607, proline dipeptidase; Provisional	NA|205aa|down_3|NZ_CP051719.1_2977606_2978221_+	PRK11568, PRK11568, IMPACT family protein	NA|484aa|down_4|NZ_CP051719.1_2978259_2979711_+	PRK10750, PRK10750, Trk system potassium transporter TrkH	NA|182aa|down_5|NZ_CP051719.1_2979722_2980268_+	PRK11104, hemG, menaquinone-dependent protoporphyrinogen IX dehydrogenase	NA|176aa|down_6|NZ_CP051719.1_2985853_2986381_-	PRK10751, PRK10751, molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional	NA|195aa|down_7|NZ_CP051719.1_2986362_2986947_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|90aa|down_8|NZ_CP051719.1_2987016_2987286_+	pfam06288, DUF1040, Protein of unknown function (DUF1040)	NA|329aa|down_9|NZ_CP051719.1_2987362_2988349_+	PRK11768, PRK11768, serine/threonine protein kinase
GCF_012934555.1_ASM1293455v1	NZ_CP051719	Escherichia coli strain SCU-116 chromosome, complete genome	2	3255050-3255177	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,c2c9_V-U4,csa3,WYL,cas1,cas3f,cas8f,cas7f,cas6f	Orphan	GCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACA	37	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,c2c9_V-U4,csa3,WYL,cas1,cas3f,cas8f,cas7f,cas6f	NA,NA	NA|529aa|up_9|NZ_CP051719.1_3244645_3246232_+	COG4943, COG4943, Predicted signal transduction protein containing sensor and EAL domains [Signal transduction mechanisms]	NA|108aa|up_8|NZ_CP051719.1_3246234_3246558_-	PRK10219, PRK10219, superoxide response transcriptional regulator SoxS	NA|155aa|up_7|NZ_CP051719.1_3246643_3247108_+	PRK15002, PRK15002, redox-sensitive transcriptional activator SoxR	NA|450aa|up_6|NZ_CP051719.1_3247654_3249004_+	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and    metabolism]	NA|550aa|up_5|NZ_CP051719.1_3249154_3250804_+	TIGR00831, Putative_Na+/H+_exchanger_Rv2287/MT2345/Mb2309	NA|295aa|up_4|NZ_CP051719.1_3250839_3251724_-	cd08438, PBP2_CidR, The C-terminal substrate binding domain of LysR-like transcriptional regulator CidR, contains the type 2 periplasmic binding fold	NA|137aa|up_3|NZ_CP051719.1_3251827_3252238_+	COG1380, COG1380, Putative effector of murein hydrolase LrgA [General function prediction only]	NA|230aa|up_2|NZ_CP051719.1_3252230_3252920_+	COG1346, LrgB, Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]	NA|550aa|up_1|NZ_CP051719.1_3252958_3254608_-	PRK09395, actP, cation/acetate symporter ActP	NA|105aa|up_0|NZ_CP051719.1_3254604_3254919_-	COG3162, COG3162, Predicted membrane protein [Function unknown]	NA|653aa|down_0|NZ_CP051719.1_3255210_3257169_-	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional	NA|479aa|down_1|NZ_CP051719.1_3257560_3258997_+	PRK11125, nrfA, ammonia-forming cytochrome c nitrite reductase	NA|189aa|down_2|NZ_CP051719.1_3259041_3259608_+	PRK11659, PRK11659, cytochrome c nitrite reductase pentaheme subunit; Provisional	NA|224aa|down_3|NZ_CP051719.1_3259604_3260276_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|319aa|down_4|NZ_CP051719.1_3260272_3261229_+	TIGR03148, cyt_nit_nrfD, cytochrome c nitrite reductase, NrfD subunit	NA|573aa|down_5|NZ_CP051719.1_3261248_3262967_+	PRK10369, PRK10369, heme lyase subunit NrfE; Provisional	NA|128aa|down_6|NZ_CP051719.1_3262959_3263343_+	PRK10144, PRK10144, formate-dependent nitrite reductase complex subunit NrfF; Provisional	NA|199aa|down_7|NZ_CP051719.1_3263339_3263936_+	PRK10370, PRK10370, formate-dependent nitrite reductase complex subunit NrfG; Provisional	NA|438aa|down_8|NZ_CP051719.1_3264278_3265592_+	PRK11283, gltP, glutamate/aspartate:proton symporter; Provisional	NA|230aa|down_9|NZ_CP051719.1_3265739_3266429_-	COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only]
GCF_012934555.1_ASM1293455v1	NZ_CP051719	Escherichia coli strain SCU-116 chromosome, complete genome	3	3496520-3496659	2	CRISPRCasFinder	no		cas3,DEDDh,DinG,c2c9_V-U4,csa3,WYL,cas1,cas3f,cas8f,cas7f,cas6f	Orphan	TGTGTAGGTCGGATAAGGCGTTCACGTCGCATCCGACAATAACA	44	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,c2c9_V-U4,csa3,WYL,cas1,cas3f,cas8f,cas7f,cas6f	NA,NA	NA|335aa|up_9|NZ_CP051719.1_3485064_3486069_-	PRK02102, PRK02102, ornithine carbamoyltransferase; Validated	NA|315aa|up_8|NZ_CP051719.1_3486079_3487024_-	PRK12354, PRK12354, carbamate kinase; Reviewed	NA|407aa|up_7|NZ_CP051719.1_3487034_3488255_-	PRK01388, PRK01388, arginine deiminase; Provisional	NA|151aa|up_6|NZ_CP051719.1_3488932_3489385_+	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|335aa|up_5|NZ_CP051719.1_3489430_3490435_-	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|139aa|up_4|NZ_CP051719.1_3490596_3491013_+	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|168aa|up_3|NZ_CP051719.1_3491189_3491693_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|396aa|up_2|NZ_CP051719.1_3491885_3493073_+	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|952aa|up_1|NZ_CP051719.1_3493119_3495975_-	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|148aa|up_0|NZ_CP051719.1_3495974_3496418_-	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|504aa|down_0|NZ_CP051719.1_3496675_3498187_-	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|367aa|down_1|NZ_CP051719.1_3498453_3499554_+	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|361aa|down_2|NZ_CP051719.1_3499553_3500636_+	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|501aa|down_3|NZ_CP051719.1_3500796_3502299_-	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|333aa|down_4|NZ_CP051719.1_3502376_3503375_-	cd01575, PBP1_GntR, ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators	NA|440aa|down_5|NZ_CP051719.1_3503441_3504761_-	TIGR00791, Gluconate_permease, gluconate transporter	NA|255aa|down_6|NZ_CP051719.1_3504825_3505590_-	PRK08085, PRK08085, gluconate 5-dehydrogenase; Provisional	NA|344aa|down_7|NZ_CP051719.1_3505613_3506645_-	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional	NA|188aa|down_8|NZ_CP051719.1_3506861_3507425_+	PRK09825, idnK, gluconokinase	NA|340aa|down_9|NZ_CP051719.1_3507428_3508448_-	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)
GCF_012934555.1_ASM1293455v1	NZ_CP051719	Escherichia coli strain SCU-116 chromosome, complete genome	4	4431990-4432120	3	CRISPRCasFinder	no		cas3,DEDDh,DinG,c2c9_V-U4,csa3,WYL,cas1,cas3f,cas8f,cas7f,cas6f	Orphan	AGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAA	36	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,c2c9_V-U4,csa3,WYL,cas1,cas3f,cas8f,cas7f,cas6f	NA|125aa|up_6|NZ_CP051719.1_4426242_4426617_-,NA|36aa|up_4|NZ_CP051719.1_4428253_4428361_-,NA	NA|245aa|up_9|NZ_CP051719.1_4423486_4424221_+	cd10800, LamB_YcsF_YbgL_like, Escherichia coli putative lactam utilization protein YbgL and similar proteins	NA|264aa|up_8|NZ_CP051719.1_4424256_4425048_+	PRK10445, PRK10445, endonuclease VIII; Provisional	NA|349aa|up_7|NZ_CP051719.1_4425044_4426091_-	COG3180, AbrB, Putative ammonia monooxygenase [General function prediction only]	NA|125aa|up_6|NZ_CP051719.1_4426242_4426617_-	NA	NA|428aa|up_5|NZ_CP051719.1_4426764_4428048_-	PRK05614, gltA, citrate synthase	NA|36aa|up_4|NZ_CP051719.1_4428253_4428361_-	NA	NA|135aa|up_3|NZ_CP051719.1_4428741_4429146_+	PRK09487, sdhC, succinate dehydrogenase cytochrome b556 subunit	NA|116aa|up_2|NZ_CP051719.1_4429139_4429487_+	PRK09488, sdhD, succinate dehydrogenase membrane anchor subunit	NA|589aa|up_1|NZ_CP051719.1_4429486_4431253_+	PRK08958, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed	NA|239aa|up_0|NZ_CP051719.1_4431268_4431985_+	PRK05950, sdhB, succinate dehydrogenase iron-sulfur subunit; Reviewed	NA|934aa|down_0|NZ_CP051719.1_4432345_4435147_+	PRK09404, sucA, 2-oxoglutarate dehydrogenase E1 component; Reviewed	NA|406aa|down_1|NZ_CP051719.1_4435161_4436379_+	PRK05704, PRK05704, 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA|389aa|down_2|NZ_CP051719.1_4436472_4437639_+	PRK00696, sucC, ADP-forming succinate--CoA ligase subunit beta	NA|290aa|down_3|NZ_CP051719.1_4437638_4438508_+	PRK05678, PRK05678, succinyl-CoA synthetase subunit alpha; Validated	NA|372aa|down_4|NZ_CP051719.1_4438747_4439863_+	sd00006, TPR, Tetratricopeptide repeat	NA|523aa|down_5|NZ_CP051719.1_4441192_4442761_+	PRK15097, PRK15097, cytochrome bd-I ubiquinol oxidase subunit CydA	NA|380aa|down_6|NZ_CP051719.1_4442776_4443916_+	PRK15003, PRK15003, cytochrome d ubiquinol oxidase subunit II	NA|38aa|down_7|NZ_CP051719.1_4443930_4444044_+	COG4890, COG4890, Predicted outer membrane lipoprotein [Function unknown]	NA|98aa|down_8|NZ_CP051719.1_4444043_4444337_+	PRK10588, PRK10588, hypothetical protein; Provisional	NA|135aa|down_9|NZ_CP051719.1_4444486_4444891_+	PRK10800, PRK10800, acyl-CoA thioesterase YbgC; Provisional
GCF_012934555.1_ASM1293455v1	NZ_CP051719	Escherichia coli strain SCU-116 chromosome, complete genome	5	4592467-4592914	2,4,1	PILER-CR,CRISPRCasFinder,CRT	no	cas1,cas3f,cas8f,cas7f,cas6f	cas3,DEDDh,DinG,c2c9_V-U4,csa3,WYL,cas1,cas3f,cas8f,cas7f,cas6f	Type I-F	GTTCACTGCCGTACAGGCAGCTTAGAAA,GTTCACTGCCGTACAGGCAGCTTAGAAA,GTTCACTGCCGTACAGGCAGCTTAGAAA	28,28,28	1	1	4592795-4592826	NZ_CP051720.1_15068-15099	I-F:I-F:I-F	6,7,7	7	TypeI-F	cas3,DEDDh,DinG,c2c9_V-U4,csa3,WYL,cas1,cas3f,cas8f,cas7f,cas6f	NA,NA	NA|551aa|up_9|NZ_CP051719.1_4579049_4580702_-	PRK05290, PRK05290, hybrid cluster protein; Provisional	NA|300aa|up_8|NZ_CP051719.1_4580845_4581745_-	COG2431, COG2431, Predicted membrane protein [Function unknown]	NA|232aa|up_7|NZ_CP051719.1_4582065_4582761_-	PRK05420, PRK05420, aquaporin Z; Provisional	NA|553aa|up_6|NZ_CP051719.1_4583186_4584845_+	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|317aa|up_5|NZ_CP051719.1_4584841_4585792_-	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|372aa|up_4|NZ_CP051719.1_4585948_4587064_+	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|649aa|up_3|NZ_CP051719.1_4587060_4589007_+	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|75aa|up_2|NZ_CP051719.1_4589079_4589304_-	PRK09937, PRK09937, cold shock-like protein CspD	NA|107aa|up_1|NZ_CP051719.1_4589626_4589947_+	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|759aa|up_0|NZ_CP051719.1_4589977_4592254_+	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	cas1|328aa|down_0|NZ_CP051719.1_4593086_4594070_+	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	cas3f|1078aa|down_1|NZ_CP051719.1_4594066_4597300_+	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	cas8f|436aa|down_2|NZ_CP051719.1_4597629_4598937_+	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1	cas7f|334aa|down_3|NZ_CP051719.1_4599867_4600869_+	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas6f|185aa|down_4|NZ_CP051719.1_4600879_4601434_+	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f	NA|73aa|down_5|NZ_CP051719.1_4602475_4602694_-	PRK00276, infA, translation initiation factor IF-1; Validated	NA|235aa|down_6|NZ_CP051719.1_4602978_4603683_-	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|574aa|down_7|NZ_CP051719.1_4603724_4605446_-	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|589aa|down_8|NZ_CP051719.1_4605446_4607213_-	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|322aa|down_9|NZ_CP051719.1_4607335_4608301_-	PRK10262, PRK10262, thioredoxin reductase; Provisional
GCF_012934555.1_ASM1293455v1	NZ_CP051719	Escherichia coli strain SCU-116 chromosome, complete genome	6	4601975-4602363	3,5,2	PILER-CR,CRISPRCasFinder,CRT	no	cas1,cas3f,cas8f,cas7f,cas6f	cas3,DEDDh,DinG,c2c9_V-U4,csa3,WYL,cas1,cas3f,cas8f,cas7f,cas6f	Type I-F	GTTCACTGCCGTACAGGCAGCTTAGAAA,GTTCACTGCCGTACAGGCAGCTTAGAAA,GTTCACTGCCGTACAGGCAGCTTAGAAA	28,28,28	1	1	4602184-4602215	NZ_CP051721.1_63-94	I-F:I-F:I-F	5,6,6	6	TypeI-F	cas3,DEDDh,DinG,c2c9_V-U4,csa3,WYL,cas1,cas3f,cas8f,cas7f,cas6f	NA,NA	NA|372aa|up_9|NZ_CP051719.1_4585948_4587064_+	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|649aa|up_8|NZ_CP051719.1_4587060_4589007_+	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|75aa|up_7|NZ_CP051719.1_4589079_4589304_-	PRK09937, PRK09937, cold shock-like protein CspD	NA|107aa|up_6|NZ_CP051719.1_4589626_4589947_+	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|759aa|up_5|NZ_CP051719.1_4589977_4592254_+	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	cas1|328aa|up_4|NZ_CP051719.1_4593086_4594070_+	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	cas3f|1078aa|up_3|NZ_CP051719.1_4594066_4597300_+	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	cas8f|436aa|up_2|NZ_CP051719.1_4597629_4598937_+	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1	cas7f|334aa|up_1|NZ_CP051719.1_4599867_4600869_+	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas6f|185aa|up_0|NZ_CP051719.1_4600879_4601434_+	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f	NA|73aa|down_0|NZ_CP051719.1_4602475_4602694_-	PRK00276, infA, translation initiation factor IF-1; Validated	NA|235aa|down_1|NZ_CP051719.1_4602978_4603683_-	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|574aa|down_2|NZ_CP051719.1_4603724_4605446_-	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|589aa|down_3|NZ_CP051719.1_4605446_4607213_-	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|322aa|down_4|NZ_CP051719.1_4607335_4608301_-	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|165aa|down_5|NZ_CP051719.1_4608844_4609339_+	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|1348aa|down_6|NZ_CP051719.1_4609473_4613517_+	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|204aa|down_7|NZ_CP051719.1_4613675_4614287_+	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|448aa|down_8|NZ_CP051719.1_4614297_4615641_+	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|431aa|down_9|NZ_CP051719.1_4615731_4617024_+	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional
