assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_012934515.1_ASM1293451v1	NZ_CP051727	Escherichia coli strain SCU-111 chromosome, complete genome	1	1048816-1050064	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,c2c9_V-U4,DEDDh,DinG	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	20,20,20	20	TypeI-E	cas3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,c2c9_V-U4,DEDDh,DinG	NA,NA	NA|245aa|up_9|NZ_CP051727.1_1038811_1039546_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|51aa|up_8|NZ_CP051727.1_1039810_1039963_+	pfam01848, HOK_GEF, Hok/gef family	cas3|900aa|up_7|NZ_CP051727.1_1040157_1042857_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|521aa|up_6|NZ_CP051727.1_1042954_1044517_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|179aa|up_5|NZ_CP051727.1_1044513_1045050_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|352aa|up_4|NZ_CP051727.1_1045064_1046120_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|NZ_CP051727.1_1046130_1046877_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|NZ_CP051727.1_1046858_1047509_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|308aa|up_1|NZ_CP051727.1_1047505_1048429_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP051727.1_1048425_1048719_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NZ_CP051727.1_1050145_1051183_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP051727.1_1051434_1052343_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP051727.1_1052344_1053772_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP051727.1_1053771_1054377_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP051727.1_1054426_1054750_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP051727.1_1054942_1055254_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP051727.1_1055272_1055983_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP051727.1_1055982_1056462_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP051727.1_1056458_1057508_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP051727.1_1057488_1058250_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_012934515.1_ASM1293451v1	NZ_CP051727	Escherichia coli strain SCU-111 chromosome, complete genome	2	1095766-1095899	2	CRISPRCasFinder	no		cas3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,c2c9_V-U4,DEDDh,DinG	Orphan	AGGTCGGATAAGACGCGTCAGCGTCGCATCCGACATTT	38	0	0	NA	NA	NA	1	1	Orphan	cas3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,c2c9_V-U4,DEDDh,DinG	NA|62aa|up_6|NZ_CP051727.1_1087723_1087909_+,NA	NA|256aa|up_9|NZ_CP051727.1_1086064_1086832_+	COG3260, COG3260, Ni,Fe-hydrogenase III small subunit [Energy production and conversion]	NA|137aa|up_8|NZ_CP051727.1_1086828_1087239_+	PRK15084, PRK15084, formate hydrogenlyase maturation protein HycH; Provisional	NA|156aa|up_7|NZ_CP051727.1_1087231_1087699_+	PRK11544, hycI, hydrogenase 3 maturation protease; Provisional	NA|62aa|up_6|NZ_CP051727.1_1087723_1087909_+	NA	NA|140aa|up_5|NZ_CP051727.1_1087934_1088354_+	COG5499, COG5499, Predicted transcription regulator containing HTH domain [Transcription]	NA|475aa|up_4|NZ_CP051727.1_1088451_1089876_-	PRK09852, PRK09852, cryptic 6-phospho-beta-glucosidase; Provisional	NA|486aa|up_3|NZ_CP051727.1_1089884_1091342_-	PRK09796, PRK09796, PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional	NA|337aa|up_2|NZ_CP051727.1_1091601_1092612_+	cd06270, PBP1_GalS-like, ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism	NA|176aa|up_1|NZ_CP051727.1_1092760_1093288_+	PRK10330, PRK10330, electron transport protein HydN	NA|751aa|up_0|NZ_CP051727.1_1093440_1095693_+	COG0068, HypF, Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]	NA|378aa|down_0|NZ_CP051727.1_1095916_1097050_-	PRK04965, PRK04965, NADH:flavorubredoxin reductase NorW	NA|480aa|down_1|NZ_CP051727.1_1097046_1098486_-	PRK05452, PRK05452, anaerobic nitric oxide reductase flavorubredoxin; Provisional	NA|505aa|down_2|NZ_CP051727.1_1098672_1100187_+	PRK05022, PRK05022, nitric oxide reductase transcriptional regulator NorR	NA|322aa|down_3|NZ_CP051727.1_1100183_1101149_-	PRK11543, gutQ, arabinose-5-phosphate isomerase GutQ	NA|258aa|down_4|NZ_CP051727.1_1101141_1101915_-	PRK10434, srlR, DNA-binding transcriptional repressor	NA|120aa|down_5|NZ_CP051727.1_1101981_1102341_-	PRK10234, PRK10234, transcriptional regulator GutM	NA|260aa|down_6|NZ_CP051727.1_1102446_1103226_-	PRK12384, PRK12384, sorbitol-6-phosphate dehydrogenase; Provisional	NA|124aa|down_7|NZ_CP051727.1_1103229_1103601_-	PRK10377, PRK10377, PTS glucitol/sorbitol transporter subunit IIA	NA|320aa|down_8|NZ_CP051727.1_1103611_1104571_-	TIGR00825, EIIBC-GUT, PTS system, glucitol/sorbitol-specific, IIBC component	NA|188aa|down_9|NZ_CP051727.1_1104567_1105131_-	TIGR00821, Glucitol/sorbitol_permease_IIC_component, PTS system, glucitol/sorbitol-specific, IIC component
GCF_012934515.1_ASM1293451v1	NZ_CP051727	Escherichia coli strain SCU-111 chromosome, complete genome	3	1564068-1564181	3	CRISPRCasFinder	no		cas3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,c2c9_V-U4,DEDDh,DinG	Orphan	TGCCGGATGCGCTTCGCTTATCCGGCCTACAAA	33	0	0	NA	NA	NA	1	1	Orphan	cas3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,c2c9_V-U4,DEDDh,DinG	NA,NA	NA|74aa|up_9|NZ_CP051727.1_1553637_1553859_-	PRK09956, PRK09956, ISNCY family transposase	NA|304aa|up_8|NZ_CP051727.1_1553871_1554783_-	PRK09956, PRK09956, ISNCY family transposase	NA|397aa|up_7|NZ_CP051727.1_1554975_1556166_-	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|420aa|up_6|NZ_CP051727.1_1556162_1557422_-	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|543aa|up_5|NZ_CP051727.1_1557411_1559040_-	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|453aa|up_4|NZ_CP051727.1_1559312_1560671_+	PRK11273, glpT, glycerol-3-phosphate transporter	NA|359aa|up_3|NZ_CP051727.1_1560675_1561752_+	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|217aa|up_2|NZ_CP051727.1_1561954_1562605_+	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|85aa|up_1|NZ_CP051727.1_1562658_1562913_-	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|377aa|up_0|NZ_CP051727.1_1562912_1564043_-	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|762aa|down_0|NZ_CP051727.1_1564232_1566518_-	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|1253aa|down_1|NZ_CP051727.1_1567199_1570958_+	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|241aa|down_2|NZ_CP051727.1_1571097_1571820_-	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|876aa|down_3|NZ_CP051727.1_1571966_1574594_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|563aa|down_4|NZ_CP051727.1_1574742_1576431_+	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|208aa|down_5|NZ_CP051727.1_1576427_1577051_+	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|1465aa|down_6|NZ_CP051727.1_1577194_1581589_+	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|550aa|down_7|NZ_CP051727.1_1581589_1583239_+	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|259aa|down_8|NZ_CP051727.1_1583243_1584020_+	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|395aa|down_9|NZ_CP051727.1_1584093_1585278_-	PRK05790, PRK05790, putative acyltransferase; Provisional
GCF_012934515.1_ASM1293451v1	NZ_CP051727	Escherichia coli strain SCU-111 chromosome, complete genome	4	2246388-2246511	4	CRISPRCasFinder	no	DEDDh	cas3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,c2c9_V-U4,DEDDh,DinG	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,c2c9_V-U4,DEDDh,DinG	NA,NA|30aa|down_7|NZ_CP051727.1_2255407_2255497_+	NA|471aa|up_9|NZ_CP051727.1_2235840_2237253_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP051727.1_2237810_2238020_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP051727.1_2238475_2239102_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP051727.1_2239122_2241225_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|213aa|up_5|NZ_CP051727.1_2241237_2241876_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP051727.1_2241939_2242608_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP051727.1_2242604_2243390_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP051727.1_2243393_2244206_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP051727.1_2244217_2245822_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP051727.1_2245947_2246253_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP051727.1_2246825_2248082_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP051727.1_2248122_2249496_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP051727.1_2249710_2250352_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP051727.1_2250391_2251540_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP051727.1_2251830_2253042_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP051727.1_2253154_2254087_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP051727.1_2254083_2255109_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP051727.1_2255407_2255497_+	NA	NA|390aa|down_8|NZ_CP051727.1_2255662_2256832_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP051727.1_2256977_2257559_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_012934515.1_ASM1293451v1	NZ_CP051727	Escherichia coli strain SCU-111 chromosome, complete genome	5	2878739-2878830	5	CRISPRCasFinder	no		cas3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,c2c9_V-U4,DEDDh,DinG	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	cas3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,c2c9_V-U4,DEDDh,DinG	NA|70aa|up_9|NZ_CP051727.1_2867989_2868199_-,NA	NA|70aa|up_9|NZ_CP051727.1_2867989_2868199_-	NA	NA|1321aa|up_8|NZ_CP051727.1_2868253_2872216_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_CP051727.1_2872255_2872894_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_CP051727.1_2873181_2874273_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP051727.1_2874272_2874965_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP051727.1_2874976_2875363_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP051727.1_2875370_2876171_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP051727.1_2876180_2876771_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP051727.1_2876781_2877276_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP051727.1_2877296_2878625_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP051727.1_2879253_2879850_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP051727.1_2879870_2880098_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP051727.1_2880135_2881377_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|307aa|down_3|NZ_CP051727.1_2881911_2882832_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_4|NZ_CP051727.1_2882831_2883137_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_5|NZ_CP051727.1_2883492_2884092_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_6|NZ_CP051727.1_2884088_2886635_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_7|NZ_CP051727.1_2886634_2887807_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_8|NZ_CP051727.1_2887936_2888629_+	PRK10766, PRK10766, two-component system response regulator TorR	NA|343aa|down_9|NZ_CP051727.1_2888601_2889630_-	PRK10936, PRK10936, TMAO reductase system periplasmic protein TorT; Provisional
GCF_012934515.1_ASM1293451v1	NZ_CP051727	Escherichia coli strain SCU-111 chromosome, complete genome	6	4162027-4162166	6	CRISPRCasFinder	no		cas3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,c2c9_V-U4,DEDDh,DinG	Orphan	TGTTATTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACACA	44	0	0	NA	NA	NA	1	1	Orphan	cas3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,c2c9_V-U4,DEDDh,DinG	NA,NA	NA|340aa|up_9|NZ_CP051727.1_4150237_4151257_+	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|188aa|up_8|NZ_CP051727.1_4151260_4151824_-	PRK09825, idnK, gluconokinase	NA|344aa|up_7|NZ_CP051727.1_4152040_4153072_+	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional	NA|255aa|up_6|NZ_CP051727.1_4153095_4153860_+	PRK08085, PRK08085, gluconate 5-dehydrogenase; Provisional	NA|440aa|up_5|NZ_CP051727.1_4153924_4155244_+	TIGR00791, Gluconate_permease, gluconate transporter	NA|333aa|up_4|NZ_CP051727.1_4155310_4156309_+	cd01575, PBP1_GntR, ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators	NA|501aa|up_3|NZ_CP051727.1_4156386_4157889_+	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|361aa|up_2|NZ_CP051727.1_4158049_4159132_-	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|367aa|up_1|NZ_CP051727.1_4159131_4160232_-	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|504aa|up_0|NZ_CP051727.1_4160498_4162010_+	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|148aa|down_0|NZ_CP051727.1_4162267_4162711_+	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|952aa|down_1|NZ_CP051727.1_4162710_4165566_+	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|396aa|down_2|NZ_CP051727.1_4165612_4166800_-	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|168aa|down_3|NZ_CP051727.1_4166992_4167496_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|139aa|down_4|NZ_CP051727.1_4167673_4168090_-	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|335aa|down_5|NZ_CP051727.1_4168251_4169256_+	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|151aa|down_6|NZ_CP051727.1_4169300_4169753_-	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|407aa|down_7|NZ_CP051727.1_4170430_4171651_+	PRK01388, PRK01388, arginine deiminase; Provisional	NA|311aa|down_8|NZ_CP051727.1_4171661_4172594_+	PRK12354, PRK12354, carbamate kinase; Reviewed	NA|335aa|down_9|NZ_CP051727.1_4172617_4173622_+	PRK02102, PRK02102, ornithine carbamoyltransferase; Validated
