assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_012923765.1_ASM1292376v1	NZ_CP048071	Mycobacterium tuberculosis strain RW-TB008 chromosome, complete genome	1	339851-340073	1	PILER-CR	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	ATCCGCCGCTACCGCCGGTGCCGCCGGCGCCGAACAGCCCGCC	43	0	0	NA	NA	NA	2	2	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|61aa|up_2|NZ_CP048071.1_332188_332371_-,NA	NA|732aa|up_9|NZ_CP048071.1_325294_327490_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|378aa|up_8|NZ_CP048071.1_327603_328737_-	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|207aa|up_7|NZ_CP048071.1_328733_329354_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|194aa|up_6|NZ_CP048071.1_329450_330032_+	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|242aa|up_5|NZ_CP048071.1_329961_330687_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|307aa|up_4|NZ_CP048071.1_330776_331697_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	NA|143aa|up_3|NZ_CP048071.1_331736_332165_-	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|61aa|up_2|NZ_CP048071.1_332188_332371_-	NA	NA|882aa|up_1|NZ_CP048071.1_332530_335176_-	pfam00934, PE, PE family	NA|873aa|up_0|NZ_CP048071.1_335439_338058_-	pfam00934, PE, PE family	NA|538aa|down_0|NZ_CP048071.1_341110_342724_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|303aa|down_1|NZ_CP048071.1_342747_343656_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|632aa|down_2|NZ_CP048071.1_343879_345775_+	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA	NA|539aa|down_3|NZ_CP048071.1_345771_347388_+	pfam05108, T7SS_ESX1_EccB, Type VII secretion system ESX-1, transport TM domain B	NA|1331aa|down_4|NZ_CP048071.1_347384_351377_+	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa	NA|103aa|down_5|NZ_CP048071.1_351373_351682_+	pfam00934, PE, PE family	NA|514aa|down_6|NZ_CP048071.1_351684_353226_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|98aa|down_7|NZ_CP048071.1_353274_353568_+	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target	NA|97aa|down_8|NZ_CP048071.1_353597_353888_+	COG4842, COG4842, Uncharacterized protein conserved in bacteria [Function unknown]	NA|296aa|down_9|NZ_CP048071.1_353898_354786_+	pfam14011, ESX-1_EspG, EspG family
GCF_012923765.1_ASM1292376v1	NZ_CP048071	Mycobacterium tuberculosis strain RW-TB008 chromosome, complete genome	2	368258-368956	1	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	TTCGCGAAGCCGATGTTGTAGCTGCCGGTGTTG	33	0	0	NA	NA	NA	10	10	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|101aa|up_4|NZ_CP048071.1_365270_365573_+,NA|410aa|down_2|NZ_CP048071.1_376495_377725_+	NA|262aa|up_9|NZ_CP048071.1_359920_360706_+	PRK14103, PRK14103, trans-aconitate 2-methyltransferase; Provisional	NA|268aa|up_8|NZ_CP048071.1_360694_361498_-	COG4424, COG4424, Uncharacterized protein conserved in bacteria [Function unknown]	NA|466aa|up_7|NZ_CP048071.1_361507_362905_-	cd16027, SGSH, N-sulfoglucosamine sulfohydrolase (SGSH; sulfamidase)	NA|607aa|up_6|NZ_CP048071.1_363083_364904_+	pfam00934, PE, PE family	NA|76aa|up_5|NZ_CP048071.1_365046_365274_+	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|101aa|up_4|NZ_CP048071.1_365270_365573_+	NA	NA|74aa|up_3|NZ_CP048071.1_365620_365842_+	PHA01748, PHA01748, hypothetical protein	NA|142aa|up_2|NZ_CP048071.1_365838_366264_+	cd18755, PIN_MtVapC3_VapC21-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC3, VapC21 and related proteins	NA|211aa|up_1|NZ_CP048071.1_366399_367032_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|303aa|up_0|NZ_CP048071.1_367028_367937_+	cd09810, LPOR_like_SDR_c_like, light-dependent protochlorophyllide reductase (LPOR)-like, classical (c)-like SDRs	NA|219aa|down_0|NZ_CP048071.1_375254_375911_+	COG3786, COG3786, Uncharacterized protein conserved in bacteria [Function unknown]	NA|164aa|down_1|NZ_CP048071.1_375980_376472_-	pfam13577, SnoaL_4, SnoaL-like domain	NA|410aa|down_2|NZ_CP048071.1_376495_377725_+	NA	NA|621aa|down_3|NZ_CP048071.1_377879_379742_+	COG0443, DnaK, Molecular chaperone [Posttranslational modification, protein turnover, chaperones]	NA|129aa|down_4|NZ_CP048071.1_379813_380200_+	COG0326, HtpG, Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]	NA|221aa|down_5|NZ_CP048071.1_380202_380865_-	pfam11259, DUF3060, Protein of unknown function (DUF3060)	NA|295aa|down_6|NZ_CP048071.1_380925_381810_+	COG2273, SKN1, Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism]	NA|205aa|down_7|NZ_CP048071.1_381858_382473_+	COG4829, CatC1, Muconolactone delta-isomerase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|257aa|down_8|NZ_CP048071.1_382496_383267_-	cd08561, GDPD_cytoplasmic_ScUgpQ2_like, Glycerophosphodiester phosphodiesterase domain of Streptomyces coelicolor cytoplasmic phosphodiesterases UgpQ2 and similar proteins	NA|265aa|down_9|NZ_CP048071.1_383628_384423_-	COG0428, COG0428, Predicted divalent heavy-metal cations transporter [Inorganic ion transport and metabolism]
GCF_012923765.1_ASM1292376v1	NZ_CP048071	Mycobacterium tuberculosis strain RW-TB008 chromosome, complete genome	3	628384-628521	1	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGACCACGCCGGTG	18	2	3	628402-628419|628402-628419|628486-628503	NZ_CP048071.1_22466-22483|NZ_CP048071.1_1414519-1414536|NZ_CP048071.1_970048-970065	NA	3	3	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|54aa|up_6|NZ_CP048071.1_619170_619332_-,NA|478aa|up_0|NZ_CP048071.1_625399_626833_-,NA|450aa|down_2|NZ_CP048071.1_630156_631506_-,NA|93aa|down_5|NZ_CP048071.1_633036_633315_-	NA|530aa|up_9|NZ_CP048071.1_615354_616944_+	COG1333, ResB, ResB protein required for cytochrome c biosynthesis [Posttranslational modification, protein turnover, chaperones]	NA|325aa|up_8|NZ_CP048071.1_616940_617915_+	TIGR03144, cytochrome_c_biogenesis_protein_chloroplast, cytochrome c-type biogenesis protein CcsB	NA|406aa|up_7|NZ_CP048071.1_617956_619174_+	COG0455, flhG, Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]	NA|54aa|up_6|NZ_CP048071.1_619170_619332_-	NA	NA|106aa|up_5|NZ_CP048071.1_619378_619696_+	pfam14012, DUF4229, Protein of unknown function (DUF4229)	NA|336aa|up_4|NZ_CP048071.1_621574_622582_-	TIGR00747, 3-oxoacyl-_synthase_3, 3-oxoacyl-(acyl-carrier-protein) synthase III	NA|293aa|up_3|NZ_CP048071.1_622663_623542_-	TIGR00751, 14-dihydroxy-2-naphthoate_octaprenyltransferase, 1,4-dihydroxy-2-naphthoate octaprenyltransferase	NA|265aa|up_2|NZ_CP048071.1_623558_624353_+	PRK07823, PRK07823, S-methyl-5'-thioadenosine phosphorylase	NA|347aa|up_1|NZ_CP048071.1_624349_625390_+	cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-epimerase, extended (e) SDRs	NA|478aa|up_0|NZ_CP048071.1_625399_626833_-	NA	NA|211aa|down_0|NZ_CP048071.1_628844_629477_+	cd04179, DPM_DPG-synthase_like, DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily	NA|221aa|down_1|NZ_CP048071.1_629473_630136_+	COG3222, COG3222, Uncharacterized protein conserved in bacteria [Function unknown]	NA|450aa|down_2|NZ_CP048071.1_630156_631506_-	NA	NA|381aa|down_3|NZ_CP048071.1_631517_632660_-	PRK07824, PRK07824, o-succinylbenzoate--CoA ligase	NA|101aa|down_4|NZ_CP048071.1_632674_632977_-	pfam11829, DUF3349, Protein of unknown function (DUF3349)	NA|93aa|down_5|NZ_CP048071.1_633036_633315_-	NA	NA|418aa|down_6|NZ_CP048071.1_633311_634565_-	COG0306, PitA, Phosphate/sulphate permeases [Inorganic ion transport and metabolism]	NA|129aa|down_7|NZ_CP048071.1_634684_635071_-	cd07264, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|295aa|down_8|NZ_CP048071.1_635133_636018_-	PRK05866, PRK05866, SDR family oxidoreductase	NA|301aa|down_9|NZ_CP048071.1_636113_637016_-	PRK08321, PRK08321, 1,4-dihydroxy-2-naphthoyl-CoA synthase
GCF_012923765.1_ASM1292376v1	NZ_CP048071	Mycobacterium tuberculosis strain RW-TB008 chromosome, complete genome	4	835238-836339	2	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GGCGGGGCCGGCGGGGCCGGCGGG	24	6	11	835262-835276|835262-835276|835262-835276|835595-835624|835649-835669|835649-835669|835649-835669|835649-835669|835781-835801|836066-836080|836150-836179	NZ_CP048071.1_255591-255577|NZ_CP048071.1_334777-334763|NZ_CP048071.1_922130-922144|NZ_CP048071.1_337398-337369|NZ_CP048071.1_336285-336265|NZ_CP048071.1_1220177-1220197|NZ_CP048071.1_1641555-1641535|NZ_CP048071.1_1641732-1641712|NZ_CP048071.1_337308-337288|NZ_CP048071.1_167503-167517|NZ_CP048071.1_2426634-2426605	NA	23	23	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|71aa|up_8|NZ_CP048071.1_825993_826206_+,NA|82aa|up_6|NZ_CP048071.1_828352_828598_+,NA|186aa|up_4|NZ_CP048071.1_830180_830738_-,NA|46aa|down_2|NZ_CP048071.1_838523_838661_-,NA|82aa|down_3|NZ_CP048071.1_838819_839065_+,NA|242aa|down_9|NZ_CP048071.1_847511_848237_-	NA|166aa|up_9|NZ_CP048071.1_825499_825997_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|71aa|up_8|NZ_CP048071.1_825993_826206_+	NA	NA|183aa|up_7|NZ_CP048071.1_826354_826903_+	TIGR03086, TIGR03086, TIGR03086 family protein	NA|82aa|up_6|NZ_CP048071.1_828352_828598_+	NA	NA|176aa|up_5|NZ_CP048071.1_829275_829803_+	pfam00934, PE, PE family	NA|186aa|up_4|NZ_CP048071.1_830180_830738_-	NA	NA|169aa|up_3|NZ_CP048071.1_830734_831241_-	pfam12728, HTH_17, Helix-turn-helix domain	NA|49aa|up_2|NZ_CP048071.1_831353_831500_-	TIGR01692, 3-hydroxyisobutyrate_dehydrogenase_mitochondrial, 3-hydroxyisobutyrate dehydrogenase	NA|176aa|up_1|NZ_CP048071.1_831448_831976_+	TIGR03817, DECH_helic, helicase/secretion neighborhood putative DEAH-box helicase	NA|823aa|up_0|NZ_CP048071.1_831995_834464_+	pfam00934, PE, PE family	NA|86aa|down_0|NZ_CP048071.1_837733_837991_+	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|143aa|down_1|NZ_CP048071.1_838014_838443_+	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|46aa|down_2|NZ_CP048071.1_838523_838661_-	NA	NA|82aa|down_3|NZ_CP048071.1_838819_839065_+	NA	NA|295aa|down_4|NZ_CP048071.1_839117_840002_-	TIGR01692, 3-hydroxyisobutyrate_dehydrogenase_mitochondrial, 3-hydroxyisobutyrate dehydrogenase	NA|391aa|down_5|NZ_CP048071.1_840012_841185_-	cd01162, IBD, Isobutyryl-CoA dehydrogenase	NA|511aa|down_6|NZ_CP048071.1_841191_842724_-	cd07085, ALDH_F6_MMSDH, Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2	NA|585aa|down_7|NZ_CP048071.1_842929_844684_+	pfam00934, PE, PE family	NA|646aa|down_8|NZ_CP048071.1_844873_846811_-	pfam00823, PPE, PPE family	NA|242aa|down_9|NZ_CP048071.1_847511_848237_-	NA
GCF_012923765.1_ASM1292376v1	NZ_CP048071	Mycobacterium tuberculosis strain RW-TB008 chromosome, complete genome	5	836492-837595	3	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GGCGGGGCCGGCGGGGCCGGCGGG	24	8	25	836585-836617|836642-836659|836684-836704|836729-836749|836729-836749|836813-836833|836813-836833|836858-836878|836858-836878|836858-836878|836858-836878|836948-836968|836948-836968|836948-836968|836948-836968|836948-836968|836948-836968|836948-836968|836948-836968|836948-836968|836948-836968|836948-836968|836948-836968|837341-837361|837341-837361	NZ_CP048071.1_333547-333515|NZ_CP048071.1_476167-476150|NZ_CP048071.1_339116-339096|NZ_CP048071.1_1219512-1219532|NZ_CP048071.1_1577054-1577034|NZ_CP048071.1_1219512-1219532|NZ_CP048071.1_1577054-1577034|NZ_CP048071.1_333253-333233|NZ_CP048071.1_338927-338907|NZ_CP048071.1_3759472-3759492|NZ_CP048071.1_4062795-4062815|NZ_CP048071.1_3781606-3781626|NZ_CP048071.1_334324-334304|NZ_CP048071.1_336006-335986|NZ_CP048071.1_336084-336064|NZ_CP048071.1_337299-337279|NZ_CP048071.1_2053038-2053018|NZ_CP048071.1_2941090-2941070|NZ_CP048071.1_3900067-3900087|NZ_CP048071.1_333109-333089|NZ_CP048071.1_338856-338836|NZ_CP048071.1_832962-832982|NZ_CP048071.1_3049937-3049957|NZ_CP048071.1_2426110-2426130|NZ_CP048071.1_2919332-2919312	NA	22	22	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|71aa|up_8|NZ_CP048071.1_825993_826206_+,NA|82aa|up_6|NZ_CP048071.1_828352_828598_+,NA|186aa|up_4|NZ_CP048071.1_830180_830738_-,NA|46aa|down_2|NZ_CP048071.1_838523_838661_-,NA|82aa|down_3|NZ_CP048071.1_838819_839065_+,NA|242aa|down_9|NZ_CP048071.1_847511_848237_-	NA|166aa|up_9|NZ_CP048071.1_825499_825997_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|71aa|up_8|NZ_CP048071.1_825993_826206_+	NA	NA|183aa|up_7|NZ_CP048071.1_826354_826903_+	TIGR03086, TIGR03086, TIGR03086 family protein	NA|82aa|up_6|NZ_CP048071.1_828352_828598_+	NA	NA|176aa|up_5|NZ_CP048071.1_829275_829803_+	pfam00934, PE, PE family	NA|186aa|up_4|NZ_CP048071.1_830180_830738_-	NA	NA|169aa|up_3|NZ_CP048071.1_830734_831241_-	pfam12728, HTH_17, Helix-turn-helix domain	NA|49aa|up_2|NZ_CP048071.1_831353_831500_-	TIGR01692, 3-hydroxyisobutyrate_dehydrogenase_mitochondrial, 3-hydroxyisobutyrate dehydrogenase	NA|176aa|up_1|NZ_CP048071.1_831448_831976_+	TIGR03817, DECH_helic, helicase/secretion neighborhood putative DEAH-box helicase	NA|823aa|up_0|NZ_CP048071.1_831995_834464_+	pfam00934, PE, PE family	NA|86aa|down_0|NZ_CP048071.1_837733_837991_+	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|143aa|down_1|NZ_CP048071.1_838014_838443_+	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|46aa|down_2|NZ_CP048071.1_838523_838661_-	NA	NA|82aa|down_3|NZ_CP048071.1_838819_839065_+	NA	NA|295aa|down_4|NZ_CP048071.1_839117_840002_-	TIGR01692, 3-hydroxyisobutyrate_dehydrogenase_mitochondrial, 3-hydroxyisobutyrate dehydrogenase	NA|391aa|down_5|NZ_CP048071.1_840012_841185_-	cd01162, IBD, Isobutyryl-CoA dehydrogenase	NA|511aa|down_6|NZ_CP048071.1_841191_842724_-	cd07085, ALDH_F6_MMSDH, Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2	NA|585aa|down_7|NZ_CP048071.1_842929_844684_+	pfam00934, PE, PE family	NA|646aa|down_8|NZ_CP048071.1_844873_846811_-	pfam00823, PPE, PPE family	NA|242aa|down_9|NZ_CP048071.1_847511_848237_-	NA
GCF_012923765.1_ASM1292376v1	NZ_CP048071	Mycobacterium tuberculosis strain RW-TB008 chromosome, complete genome	6	923391-924422	2	CRT	no	csa3	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type I-A	CGGGGCCGGCGGNNCCGGCGG	21	1	3	924258-924293|924258-924293|924258-924293	NZ_CP048071.1_1216264-1216299|NZ_CP048071.1_672142-672107|NZ_CP048071.1_2426422-2426387	NA	21	21	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|184aa|down_1|NZ_CP048071.1_928431_928983_-,NA|81aa|down_7|NZ_CP048071.1_934446_934689_+	NA|259aa|up_9|NZ_CP048071.1_909498_910275_+	PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional	NA|214aa|up_8|NZ_CP048071.1_910330_910972_-	TIGR02135, Uncharacterized_protein, phosphate transport system regulatory protein PhoU	NA|685aa|up_7|NZ_CP048071.1_911029_913084_-	TIGR00350, Transcriptional_regulator_LytR, cell envelope-related function transcriptional attenuator common domain	NA|390aa|up_6|NZ_CP048071.1_913249_914419_-	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|339aa|up_5|NZ_CP048071.1_914506_915523_-	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain	NA|214aa|up_4|NZ_CP048071.1_915684_916326_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|352aa|up_3|NZ_CP048071.1_916406_917462_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	csa3|131aa|up_2|NZ_CP048071.1_917513_917906_-	smart00418, HTH_ARSR, helix_turn_helix, Arsenical Resistance Operon Repressor	NA|141aa|up_1|NZ_CP048071.1_917963_918386_-	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|272aa|up_0|NZ_CP048071.1_919665_920481_-	TIGR04255, hypothetical_protein, TIGR04255 family protein	NA|215aa|down_0|NZ_CP048071.1_927806_928451_+	pfam14032, PknH_C, PknH-like extracellular domain	NA|184aa|down_1|NZ_CP048071.1_928431_928983_-	NA	NA|241aa|down_2|NZ_CP048071.1_929063_929786_-	COG4849, COG4849, Predicted nucleotidyltransferase [General function prediction    only]	NA|343aa|down_3|NZ_CP048071.1_929856_930885_-	COG4861, COG4861, Uncharacterized protein conserved in bacteria [Function unknown]	NA|257aa|down_4|NZ_CP048071.1_931573_932344_+	pfam01427, Peptidase_M15, D-ala-D-ala dipeptidase	NA|271aa|down_5|NZ_CP048071.1_932430_933243_+	pfam13847, Methyltransf_31, Methyltransferase domain	NA|287aa|down_6|NZ_CP048071.1_933310_934171_-	TIGR01250, Proline_iminopeptidase, proline-specific peptidase, Bacillus coagulans-type subfamily	NA|81aa|down_7|NZ_CP048071.1_934446_934689_+	NA	NA|431aa|down_8|NZ_CP048071.1_934965_936258_+	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|335aa|down_9|NZ_CP048071.1_936241_937246_+	COG1071, AcoA, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
GCF_012923765.1_ASM1292376v1	NZ_CP048071	Mycobacterium tuberculosis strain RW-TB008 chromosome, complete genome	7	1636930-1637014	4	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCCGCCCTTACCGCCGGCGCCGCCAGC	27	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|38aa|up_6|NZ_CP048071.1_1627322_1627436_-,NA|137aa|up_5|NZ_CP048071.1_1627485_1627896_-,NA|288aa|down_2|NZ_CP048071.1_1645153_1646017_+	NA|489aa|up_9|NZ_CP048071.1_1622416_1623883_-	pfam00934, PE, PE family	NA|767aa|up_8|NZ_CP048071.1_1623989_1626290_+	TIGR00509, Trimethylamine-N-oxide_reductase_1, molybdopterin guanine dinucleotide-containing S/N-oxide reductases	NA|162aa|up_7|NZ_CP048071.1_1626405_1626891_-	cd07820, SRPBCC_3, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins	NA|38aa|up_6|NZ_CP048071.1_1627322_1627436_-	NA	NA|137aa|up_5|NZ_CP048071.1_1627485_1627896_-	NA	NA|248aa|up_4|NZ_CP048071.1_1627912_1628656_-	pfam01182, Glucosamine_iso, Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase	NA|304aa|up_3|NZ_CP048071.1_1628652_1629564_-	TIGR00534, Putative_OxPP_cycle_protein_OpcA, glucose-6-phosphate dehydrogenase assembly protein OpcA	NA|515aa|up_2|NZ_CP048071.1_1629616_1631161_-	PRK05722, PRK05722, glucose-6-phosphate 1-dehydrogenase; Validated	NA|374aa|up_1|NZ_CP048071.1_1631157_1632279_-	PRK03343, PRK03343, transaldolase; Validated	NA|701aa|up_0|NZ_CP048071.1_1632295_1634398_-	COG0021, TktA, Transketolase [Carbohydrate transport and metabolism]	NA|309aa|down_0|NZ_CP048071.1_1639440_1640367_+	PRK04375, PRK04375, protoheme IX farnesyltransferase; Provisional	NA|329aa|down_1|NZ_CP048071.1_1644147_1645134_-	cd05286, QOR2, Quinone oxidoreductase (QOR)	NA|288aa|down_2|NZ_CP048071.1_1645153_1646017_+	NA	NA|311aa|down_3|NZ_CP048071.1_1645966_1646899_-	COG1612, CtaA, Uncharacterized protein required for cytochrome oxidase assembly [Posttranslational modification, protein turnover, chaperones]	NA|262aa|down_4|NZ_CP048071.1_1647010_1647796_-	TIGR00025, Mtu_efflux, ABC transporter efflux protein, DrrB family	NA|314aa|down_5|NZ_CP048071.1_1647792_1648734_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|592aa|down_6|NZ_CP048071.1_1648942_1650718_-	TIGR03459, crt_membr, carotene biosynthesis associated membrane protein	NA|269aa|down_7|NZ_CP048071.1_1650765_1651572_+	COG2345, COG2345, Predicted transcriptional regulator [Transcription]	NA|847aa|down_8|NZ_CP048071.1_1651568_1654109_+	TIGR01980, UPF0051_protein_slr0074, FeS assembly protein SufB	NA|398aa|down_9|NZ_CP048071.1_1654105_1655299_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]
GCF_012923765.1_ASM1292376v1	NZ_CP048071	Mycobacterium tuberculosis strain RW-TB008 chromosome, complete genome	8	1637098-1637200	5	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCCGCCCTTACCGCCGGCGCCGCCAGC	27	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|38aa|up_6|NZ_CP048071.1_1627322_1627436_-,NA|137aa|up_5|NZ_CP048071.1_1627485_1627896_-,NA|288aa|down_2|NZ_CP048071.1_1645153_1646017_+	NA|489aa|up_9|NZ_CP048071.1_1622416_1623883_-	pfam00934, PE, PE family	NA|767aa|up_8|NZ_CP048071.1_1623989_1626290_+	TIGR00509, Trimethylamine-N-oxide_reductase_1, molybdopterin guanine dinucleotide-containing S/N-oxide reductases	NA|162aa|up_7|NZ_CP048071.1_1626405_1626891_-	cd07820, SRPBCC_3, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins	NA|38aa|up_6|NZ_CP048071.1_1627322_1627436_-	NA	NA|137aa|up_5|NZ_CP048071.1_1627485_1627896_-	NA	NA|248aa|up_4|NZ_CP048071.1_1627912_1628656_-	pfam01182, Glucosamine_iso, Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase	NA|304aa|up_3|NZ_CP048071.1_1628652_1629564_-	TIGR00534, Putative_OxPP_cycle_protein_OpcA, glucose-6-phosphate dehydrogenase assembly protein OpcA	NA|515aa|up_2|NZ_CP048071.1_1629616_1631161_-	PRK05722, PRK05722, glucose-6-phosphate 1-dehydrogenase; Validated	NA|374aa|up_1|NZ_CP048071.1_1631157_1632279_-	PRK03343, PRK03343, transaldolase; Validated	NA|701aa|up_0|NZ_CP048071.1_1632295_1634398_-	COG0021, TktA, Transketolase [Carbohydrate transport and metabolism]	NA|309aa|down_0|NZ_CP048071.1_1639440_1640367_+	PRK04375, PRK04375, protoheme IX farnesyltransferase; Provisional	NA|329aa|down_1|NZ_CP048071.1_1644147_1645134_-	cd05286, QOR2, Quinone oxidoreductase (QOR)	NA|288aa|down_2|NZ_CP048071.1_1645153_1646017_+	NA	NA|311aa|down_3|NZ_CP048071.1_1645966_1646899_-	COG1612, CtaA, Uncharacterized protein required for cytochrome oxidase assembly [Posttranslational modification, protein turnover, chaperones]	NA|262aa|down_4|NZ_CP048071.1_1647010_1647796_-	TIGR00025, Mtu_efflux, ABC transporter efflux protein, DrrB family	NA|314aa|down_5|NZ_CP048071.1_1647792_1648734_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|592aa|down_6|NZ_CP048071.1_1648942_1650718_-	TIGR03459, crt_membr, carotene biosynthesis associated membrane protein	NA|269aa|down_7|NZ_CP048071.1_1650765_1651572_+	COG2345, COG2345, Predicted transcriptional regulator [Transcription]	NA|847aa|down_8|NZ_CP048071.1_1651568_1654109_+	TIGR01980, UPF0051_protein_slr0074, FeS assembly protein SufB	NA|398aa|down_9|NZ_CP048071.1_1654105_1655299_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]
GCF_012923765.1_ASM1292376v1	NZ_CP048071	Mycobacterium tuberculosis strain RW-TB008 chromosome, complete genome	9	1637311-1637617	6	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCCGCCCTTACCGCCGGCGCCGCCAGC	27	0	0	NA	NA	NA	4	4	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|38aa|up_6|NZ_CP048071.1_1627322_1627436_-,NA|137aa|up_5|NZ_CP048071.1_1627485_1627896_-,NA|288aa|down_2|NZ_CP048071.1_1645153_1646017_+	NA|489aa|up_9|NZ_CP048071.1_1622416_1623883_-	pfam00934, PE, PE family	NA|767aa|up_8|NZ_CP048071.1_1623989_1626290_+	TIGR00509, Trimethylamine-N-oxide_reductase_1, molybdopterin guanine dinucleotide-containing S/N-oxide reductases	NA|162aa|up_7|NZ_CP048071.1_1626405_1626891_-	cd07820, SRPBCC_3, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins	NA|38aa|up_6|NZ_CP048071.1_1627322_1627436_-	NA	NA|137aa|up_5|NZ_CP048071.1_1627485_1627896_-	NA	NA|248aa|up_4|NZ_CP048071.1_1627912_1628656_-	pfam01182, Glucosamine_iso, Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase	NA|304aa|up_3|NZ_CP048071.1_1628652_1629564_-	TIGR00534, Putative_OxPP_cycle_protein_OpcA, glucose-6-phosphate dehydrogenase assembly protein OpcA	NA|515aa|up_2|NZ_CP048071.1_1629616_1631161_-	PRK05722, PRK05722, glucose-6-phosphate 1-dehydrogenase; Validated	NA|374aa|up_1|NZ_CP048071.1_1631157_1632279_-	PRK03343, PRK03343, transaldolase; Validated	NA|701aa|up_0|NZ_CP048071.1_1632295_1634398_-	COG0021, TktA, Transketolase [Carbohydrate transport and metabolism]	NA|309aa|down_0|NZ_CP048071.1_1639440_1640367_+	PRK04375, PRK04375, protoheme IX farnesyltransferase; Provisional	NA|329aa|down_1|NZ_CP048071.1_1644147_1645134_-	cd05286, QOR2, Quinone oxidoreductase (QOR)	NA|288aa|down_2|NZ_CP048071.1_1645153_1646017_+	NA	NA|311aa|down_3|NZ_CP048071.1_1645966_1646899_-	COG1612, CtaA, Uncharacterized protein required for cytochrome oxidase assembly [Posttranslational modification, protein turnover, chaperones]	NA|262aa|down_4|NZ_CP048071.1_1647010_1647796_-	TIGR00025, Mtu_efflux, ABC transporter efflux protein, DrrB family	NA|314aa|down_5|NZ_CP048071.1_1647792_1648734_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|592aa|down_6|NZ_CP048071.1_1648942_1650718_-	TIGR03459, crt_membr, carotene biosynthesis associated membrane protein	NA|269aa|down_7|NZ_CP048071.1_1650765_1651572_+	COG2345, COG2345, Predicted transcriptional regulator [Transcription]	NA|847aa|down_8|NZ_CP048071.1_1651568_1654109_+	TIGR01980, UPF0051_protein_slr0074, FeS assembly protein SufB	NA|398aa|down_9|NZ_CP048071.1_1654105_1655299_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]
GCF_012923765.1_ASM1292376v1	NZ_CP048071	Mycobacterium tuberculosis strain RW-TB008 chromosome, complete genome	10	1637713-1637918	7	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCCGCCCTTACCGCCGGCGCCGCCAGC	27	0	0	NA	NA	NA	2	2	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|38aa|up_6|NZ_CP048071.1_1627322_1627436_-,NA|137aa|up_5|NZ_CP048071.1_1627485_1627896_-,NA|288aa|down_2|NZ_CP048071.1_1645153_1646017_+	NA|489aa|up_9|NZ_CP048071.1_1622416_1623883_-	pfam00934, PE, PE family	NA|767aa|up_8|NZ_CP048071.1_1623989_1626290_+	TIGR00509, Trimethylamine-N-oxide_reductase_1, molybdopterin guanine dinucleotide-containing S/N-oxide reductases	NA|162aa|up_7|NZ_CP048071.1_1626405_1626891_-	cd07820, SRPBCC_3, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins	NA|38aa|up_6|NZ_CP048071.1_1627322_1627436_-	NA	NA|137aa|up_5|NZ_CP048071.1_1627485_1627896_-	NA	NA|248aa|up_4|NZ_CP048071.1_1627912_1628656_-	pfam01182, Glucosamine_iso, Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase	NA|304aa|up_3|NZ_CP048071.1_1628652_1629564_-	TIGR00534, Putative_OxPP_cycle_protein_OpcA, glucose-6-phosphate dehydrogenase assembly protein OpcA	NA|515aa|up_2|NZ_CP048071.1_1629616_1631161_-	PRK05722, PRK05722, glucose-6-phosphate 1-dehydrogenase; Validated	NA|374aa|up_1|NZ_CP048071.1_1631157_1632279_-	PRK03343, PRK03343, transaldolase; Validated	NA|701aa|up_0|NZ_CP048071.1_1632295_1634398_-	COG0021, TktA, Transketolase [Carbohydrate transport and metabolism]	NA|309aa|down_0|NZ_CP048071.1_1639440_1640367_+	PRK04375, PRK04375, protoheme IX farnesyltransferase; Provisional	NA|329aa|down_1|NZ_CP048071.1_1644147_1645134_-	cd05286, QOR2, Quinone oxidoreductase (QOR)	NA|288aa|down_2|NZ_CP048071.1_1645153_1646017_+	NA	NA|311aa|down_3|NZ_CP048071.1_1645966_1646899_-	COG1612, CtaA, Uncharacterized protein required for cytochrome oxidase assembly [Posttranslational modification, protein turnover, chaperones]	NA|262aa|down_4|NZ_CP048071.1_1647010_1647796_-	TIGR00025, Mtu_efflux, ABC transporter efflux protein, DrrB family	NA|314aa|down_5|NZ_CP048071.1_1647792_1648734_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|592aa|down_6|NZ_CP048071.1_1648942_1650718_-	TIGR03459, crt_membr, carotene biosynthesis associated membrane protein	NA|269aa|down_7|NZ_CP048071.1_1650765_1651572_+	COG2345, COG2345, Predicted transcriptional regulator [Transcription]	NA|847aa|down_8|NZ_CP048071.1_1651568_1654109_+	TIGR01980, UPF0051_protein_slr0074, FeS assembly protein SufB	NA|398aa|down_9|NZ_CP048071.1_1654105_1655299_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]
GCF_012923765.1_ASM1292376v1	NZ_CP048071	Mycobacterium tuberculosis strain RW-TB008 chromosome, complete genome	11	2079213-2079467	3	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCCNCCGTCGCCGCCNNTGCC	21	2	3	2079294-2079311|2079294-2079311|2079384-2079401	NZ_CP048071.1_398403-398386|NZ_CP048071.1_604491-604474|NZ_CP048071.1_3437185-3437168	NA	5	5	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|88aa|up_0|NZ_CP048071.1_2078572_2078836_-,NA	NA|165aa|up_9|NZ_CP048071.1_2064978_2065473_+	pfam02577, DNase-RNase, Bifunctional nuclease	NA|226aa|up_8|NZ_CP048071.1_2065764_2066442_+	cd01105, HTH_GlnR-like, Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators	NA|942aa|up_7|NZ_CP048071.1_2066800_2069626_+	PRK05367, PRK05367, aminomethyl-transferring glycine dehydrogenase	NA|287aa|up_6|NZ_CP048071.1_2069852_2070713_-	PRK03204, PRK03204, haloalkane dehalogenase; Provisional	NA|289aa|up_5|NZ_CP048071.1_2070753_2071620_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|629aa|up_4|NZ_CP048071.1_2071624_2073511_-	TIGR00976, Hypothetical_protein_Rv1835c/MT1883/Mb1866c	NA|678aa|up_3|NZ_CP048071.1_2073526_2075560_-	cd01456, vWA_ywmD_type, VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	NA|742aa|up_2|NZ_CP048071.1_2075679_2077905_-	PRK02999, PRK02999, malate synthase G; Provisional	NA|132aa|up_1|NZ_CP048071.1_2078180_2078576_-	COG1848, COG1848, Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]	NA|88aa|up_0|NZ_CP048071.1_2078572_2078836_-	NA	NA|350aa|down_0|NZ_CP048071.1_2080604_2081654_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|456aa|down_1|NZ_CP048071.1_2081653_2083021_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|479aa|down_2|NZ_CP048071.1_2083194_2084631_-	PRK07807, PRK07807, GuaB1 family IMP dehydrogenase-related protein	NA|484aa|down_3|NZ_CP048071.1_2084666_2086118_-	PRK09287, PRK09287, NADP-dependent phosphogluconate dehydrogenase	NA|317aa|down_4|NZ_CP048071.1_2086147_2087098_-	cd07326, M56_BlaR1_MecR1_like, Peptidase M56-like including those in BlaR1 and MecR1, integral membrane metallopeptidase	NA|139aa|down_5|NZ_CP048071.1_2087112_2087529_-	COG3682, COG3682, Predicted transcriptional regulator [Transcription]	NA|141aa|down_6|NZ_CP048071.1_2087806_2088229_+	cd03443, PaaI_thioesterase, PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria	NA|101aa|down_7|NZ_CP048071.1_2088277_2088580_+	pfam00547, Urease_gamma, Urease, gamma subunit	NA|105aa|down_8|NZ_CP048071.1_2088576_2088891_+	PRK13202, ureB, urease subunit beta; Reviewed	NA|578aa|down_9|NZ_CP048071.1_2088890_2090624_+	PRK13206, ureC, urease subunit alpha; Reviewed
GCF_012923765.1_ASM1292376v1	NZ_CP048071	Mycobacterium tuberculosis strain RW-TB008 chromosome, complete genome	12	2160473-2160692	8	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GTGCCAGCCGGAATCGTGATCGGCGGAACCGTCACCGACGGAATACTCA	49	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|136aa|up_2|NZ_CP048071.1_2150918_2151326_-,NA|127aa|down_5|NZ_CP048071.1_2168208_2168589_-	NA|216aa|up_9|NZ_CP048071.1_2144232_2144880_-	pfam14081, DUF4262, Domain of unknown function (DUF4262)	NA|741aa|up_8|NZ_CP048071.1_2144886_2147109_-	PRK15061, PRK15061, catalase/peroxidase	NA|148aa|up_7|NZ_CP048071.1_2147146_2147590_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|198aa|up_6|NZ_CP048071.1_2147703_2148297_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|202aa|up_5|NZ_CP048071.1_2148379_2148985_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|335aa|up_4|NZ_CP048071.1_2149084_2150089_-	cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family	NA|251aa|up_3|NZ_CP048071.1_2150188_2150941_+	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|136aa|up_2|NZ_CP048071.1_2150918_2151326_-	NA	NA|767aa|up_1|NZ_CP048071.1_2151460_2153761_+	PLN02892, PLN02892, isocitrate lyase	NA|1680aa|up_0|NZ_CP048071.1_2153930_2158970_-	pfam00823, PPE, PPE family	NA|155aa|down_0|NZ_CP048071.1_2162719_2163184_-	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|down_1|NZ_CP048071.1_2163281_2164145_+	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|424aa|down_2|NZ_CP048071.1_2164182_2165454_-	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|372aa|down_3|NZ_CP048071.1_2165725_2166841_+	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|447aa|down_4|NZ_CP048071.1_2166831_2168172_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|127aa|down_5|NZ_CP048071.1_2168208_2168589_-	NA	NA|621aa|down_6|NZ_CP048071.1_2168745_2170608_+	PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional	NA|160aa|down_7|NZ_CP048071.1_2170615_2171095_-	pfam09167, DUF1942, Domain of unknown function (DUF1942)	NA|258aa|down_8|NZ_CP048071.1_2171331_2172105_+	COG3361, COG3361, Uncharacterized conserved protein [Function unknown]	NA|256aa|down_9|NZ_CP048071.1_2172108_2172876_-	PRK05867, PRK05867, SDR family oxidoreductase
GCF_012923765.1_ASM1292376v1	NZ_CP048071	Mycobacterium tuberculosis strain RW-TB008 chromosome, complete genome	13	3112307-3113601	9,4,2	CRISPRCasFinder,CRT,PILER-CR	no	c2c9_V-U4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-C,Type III-B,Type III-A,Type III-D	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	17,17,17	17	TypeIII-C,TypeIII-B,TypeIII-A,TypeIII-D	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|85aa|up_5|NZ_CP048071.1_3107821_3108076_-,NA|135aa|up_4|NZ_CP048071.1_3108223_3108628_+,NA|64aa|up_3|NZ_CP048071.1_3108624_3108816_+,NA|86aa|up_1|NZ_CP048071.1_3110402_3110660_+,NA	NA|119aa|up_9|NZ_CP048071.1_3105523_3105880_-	COG2337, MazF, Growth inhibitor [Signal transduction mechanisms]	NA|77aa|up_8|NZ_CP048071.1_3105863_3106094_-	COG0864, NikR, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain and a metal-binding domain [Transcription]	NA|348aa|up_7|NZ_CP048071.1_3106136_3107180_-	COG5586, COG5586, Uncharacterized conserved protein [Function unknown]	NA|92aa|up_6|NZ_CP048071.1_3107370_3107646_+	COG4453, COG4453, Uncharacterized protein conserved in bacteria [Function unknown]	NA|85aa|up_5|NZ_CP048071.1_3107821_3108076_-	NA	NA|135aa|up_4|NZ_CP048071.1_3108223_3108628_+	NA	NA|64aa|up_3|NZ_CP048071.1_3108624_3108816_+	NA	NA|385aa|up_2|NZ_CP048071.1_3109014_3110169_+	pfam00665, rve, Integrase core domain	NA|86aa|up_1|NZ_CP048071.1_3110402_3110660_+	NA	NA|421aa|up_0|NZ_CP048071.1_3110995_3112257_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas2|114aa|down_0|NZ_CP048071.1_3113649_3113991_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_1|NZ_CP048071.1_3113991_3115008_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm6|383aa|down_2|NZ_CP048071.1_3115020_3116169_-	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm5gr7|376aa|down_3|NZ_CP048071.1_3116264_3117392_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|277aa|down_4|NZ_CP048071.1_3117388_3118219_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_5|NZ_CP048071.1_3118199_3118910_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_6|NZ_CP048071.1_3118919_3119294_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|813aa|down_7|NZ_CP048071.1_3119290_3121729_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|241aa|down_8|NZ_CP048071.1_3121725_3122448_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	NA|182aa|down_9|NZ_CP048071.1_3122847_3123393_-	COG4293, COG4293, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_012923765.1_ASM1292376v1	NZ_CP048071	Mycobacterium tuberculosis strain RW-TB008 chromosome, complete genome	14	3717994-3718142	10	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	AACCCGATATTACCCACACCCAT	23	1	1	3718077-3718119	NZ_CP048071.1_3719745-3719787	NA	2	2	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|96aa|down_5|NZ_CP048071.1_3741169_3741457_-	NA|384aa|up_9|NZ_CP048071.1_3705767_3706919_+	COG1820, NagA, N-acetylglucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism]	NA|282aa|up_8|NZ_CP048071.1_3707109_3707955_-	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|147aa|up_7|NZ_CP048071.1_3708429_3708870_+	cd04770, HTH_HMRTR, Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators	NA|290aa|up_6|NZ_CP048071.1_3708903_3709773_-	TIGR00766, Uncharacterized_protein_Dda3937_02003, inner membrane protein YhjD	NA|337aa|up_5|NZ_CP048071.1_3709793_3710804_-	PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed	NA|274aa|up_4|NZ_CP048071.1_3710900_3711722_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|410aa|up_3|NZ_CP048071.1_3711788_3713018_-	PRK08299, PRK08299, NADP-dependent isocitrate dehydrogenase	NA|450aa|up_2|NZ_CP048071.1_3713300_3714650_+	PRK07812, PRK07812, O-acetylhomoserine aminocarboxypropyltransferase; Validated	NA|380aa|up_1|NZ_CP048071.1_3714661_3715801_+	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|244aa|up_0|NZ_CP048071.1_3715797_3716529_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|2115aa|down_0|NZ_CP048071.1_3720542_3726887_-	pfam00934, PE, PE family	NA|86aa|down_1|NZ_CP048071.1_3727310_3727568_-	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|3734aa|down_2|NZ_CP048071.1_3727823_3739025_-	pfam00823, PPE, PPE family	NA|149aa|down_3|NZ_CP048071.1_3739651_3740098_+	pfam01548, DEDD_Tnp_IS110, Transposase	NA|247aa|down_4|NZ_CP048071.1_3740134_3740875_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|96aa|down_5|NZ_CP048071.1_3741169_3741457_-	NA	NA|1937aa|down_6|NZ_CP048071.1_3741793_3747604_-	pfam00823, PPE, PPE family	NA|265aa|down_7|NZ_CP048071.1_3747847_3748642_-	pfam08031, BBE, Berberine and berberine like	NA|124aa|down_8|NZ_CP048071.1_3748723_3749095_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|73aa|down_9|NZ_CP048071.1_3748992_3749211_-	pfam01565, FAD_binding_4, FAD binding domain
GCF_012923765.1_ASM1292376v1	NZ_CP048071	Mycobacterium tuberculosis strain RW-TB008 chromosome, complete genome	15	4079483-4079571	11	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCTCGGCGACGATGCGGGCCGGATGACGGCC	31	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|257aa|up_5|NZ_CP048071.1_4070070_4070841_-,NA|233aa|up_0|NZ_CP048071.1_4078587_4079286_-,NA|126aa|down_6|NZ_CP048071.1_4084806_4085184_+	NA|267aa|up_9|NZ_CP048071.1_4064944_4065745_-	COG4965, TadB, Flp pilus assembly protein TadB [Intracellular trafficking and secretion]	NA|388aa|up_8|NZ_CP048071.1_4065741_4066905_-	TIGR03819, heli_sec_ATPase, helicase/secretion neighborhood ATPase	NA|351aa|up_7|NZ_CP048071.1_4066901_4067954_-	TIGR03815, CpaE_hom_Actino, helicase/secretion neighborhood CpaE-like protein	NA|288aa|up_6|NZ_CP048071.1_4068452_4069316_+	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|257aa|up_5|NZ_CP048071.1_4070070_4070841_-	NA	NA|288aa|up_4|NZ_CP048071.1_4072479_4073343_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|309aa|up_3|NZ_CP048071.1_4073335_4074262_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|542aa|up_2|NZ_CP048071.1_4074263_4075889_-	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|652aa|up_1|NZ_CP048071.1_4076596_4078552_+	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional	NA|233aa|up_0|NZ_CP048071.1_4078587_4079286_-	NA	NA|173aa|down_0|NZ_CP048071.1_4079631_4080150_+	pfam07332, Phage_holin_3_6, Putative Actinobacterial Holin-X, holin superfamily III	NA|328aa|down_1|NZ_CP048071.1_4080150_4081134_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|398aa|down_2|NZ_CP048071.1_4081126_4082320_-	pfam13365, Trypsin_2, Trypsin-like peptidase domain	NA|274aa|down_3|NZ_CP048071.1_4082325_4083147_-	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes	NA|228aa|down_4|NZ_CP048071.1_4083278_4083962_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|246aa|down_5|NZ_CP048071.1_4083961_4084699_-	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]	NA|126aa|down_6|NZ_CP048071.1_4084806_4085184_+	NA	NA|225aa|down_7|NZ_CP048071.1_4085282_4085957_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|265aa|down_8|NZ_CP048071.1_4086062_4086857_-	cd16278, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|152aa|down_9|NZ_CP048071.1_4086863_4087319_-	cd02199, YjgF_YER057c_UK114_like_1, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function
