assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_012871055.1_ASM1287105v1	NZ_AP013103	Bradyrhizobium elkanii USDA 61	1	3111625-3111732	1	CRISPRCasFinder	no		DEDDh,csa3,WYL,RT,PD-DExK	Orphan	CTATTCCGATCGTGGCGCGCCGAC	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,WYL,RT,PD-DExK	NA|91aa|up_0|NZ_AP013103.1_3110290_3110563_-,NA|82aa|down_1|NZ_AP013103.1_3113762_3114008_-,NA|95aa|down_6|NZ_AP013103.1_3119289_3119574_-	NA|309aa|up_9|NZ_AP013103.1_3099472_3100399_+	pfam08450, SGL, SMP-30/Gluconolaconase/LRE-like region	NA|198aa|up_8|NZ_AP013103.1_3100479_3101073_+	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]	NA|548aa|up_7|NZ_AP013103.1_3101101_3102745_+	PRK02106, PRK02106, choline dehydrogenase; Validated	NA|501aa|up_6|NZ_AP013103.1_3102972_3104475_-	COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]	NA|281aa|up_5|NZ_AP013103.1_3104565_3105408_-	COG0714, COG0714, MoxR-like ATPases [General function prediction only]	NA|609aa|up_4|NZ_AP013103.1_3105591_3107418_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|392aa|up_3|NZ_AP013103.1_3107670_3108846_+	COG3825, COG3825, Uncharacterized protein conserved in bacteria [Function unknown]	NA|138aa|up_2|NZ_AP013103.1_3108901_3109315_+	cd01447, Polysulfide_ST, Polysulfide-sulfurtransferase - Rhodanese Homology Domain	NA|286aa|up_1|NZ_AP013103.1_3109414_3110272_+	COG2897, SseA, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]	NA|91aa|up_0|NZ_AP013103.1_3110290_3110563_-	NA	NA|321aa|down_0|NZ_AP013103.1_3112681_3113644_-	cd12169, PGDH_like_1, Putative D-3-Phosphoglycerate Dehydrogenases	NA|82aa|down_1|NZ_AP013103.1_3113762_3114008_-	NA	NA|550aa|down_2|NZ_AP013103.1_3114281_3115931_+	PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed	NA|195aa|down_3|NZ_AP013103.1_3116181_3116766_+	PRK05208, PRK05208, hypothetical protein; Provisional	NA|364aa|down_4|NZ_AP013103.1_3116786_3117878_-	pfam13676, TIR_2, TIR domain	NA|411aa|down_5|NZ_AP013103.1_3117961_3119194_+	TIGR02283, Membrane-bound_lytic_murein_transglycosylase_B, lytic murein transglycosylase	NA|95aa|down_6|NZ_AP013103.1_3119289_3119574_-	NA	NA|102aa|down_7|NZ_AP013103.1_3119810_3120116_-	PRK10811, rne, ribonuclease E; Reviewed	NA|91aa|down_8|NZ_AP013103.1_3120495_3120768_+	cd19945, Fer2_BFD, bacterioferritin-associated ferredoxin (BFD) [2Fe-2S]-binding domain	NA|163aa|down_9|NZ_AP013103.1_3120900_3121389_+	cd00907, Bacterioferritin, Bacterioferritin, ferritin-like diiron-binding domain
GCF_012871055.1_ASM1287105v1	NZ_AP013103	Bradyrhizobium elkanii USDA 61	2	5082493-5082612	2	CRISPRCasFinder	no		DEDDh,csa3,WYL,RT,PD-DExK	Orphan	ATCTCGGGATTCCGGGTTCGATGCTGCGCATCGCCC	36	1	1	5082529-5082576	NZ_AP013103.1_902867-902914	NA	1	1	Orphan	DEDDh,csa3,WYL,RT,PD-DExK	NA|66aa|up_3|NZ_AP013103.1_5079887_5080085_+,NA|177aa|up_2|NZ_AP013103.1_5080081_5080612_-,NA|117aa|down_4|NZ_AP013103.1_5089198_5089549_-,NA|53aa|down_7|NZ_AP013103.1_5091221_5091380_+	NA|122aa|up_9|NZ_AP013103.1_5072828_5073194_+	cd17548, REC_DivK-like, phosphoacceptor receiver (REC) domain of DivK and similar proteins	NA|458aa|up_8|NZ_AP013103.1_5073209_5074583_+	PRK09581, pleD, response regulator PleD; Reviewed	NA|383aa|up_7|NZ_AP013103.1_5074664_5075813_-	pfam00144, Beta-lactamase, Beta-lactamase	NA|201aa|up_6|NZ_AP013103.1_5076018_5076621_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|411aa|up_5|NZ_AP013103.1_5076754_5077987_+	cd17355, MFS_YcxA_like, MFS-type transporter YcxA and similar proteins of the Major Facilitator Superfamily of transporters	NA|465aa|up_4|NZ_AP013103.1_5078490_5079885_+	COG0004, AmtB, Ammonia permease [Inorganic ion transport and metabolism]	NA|66aa|up_3|NZ_AP013103.1_5079887_5080085_+	NA	NA|177aa|up_2|NZ_AP013103.1_5080081_5080612_-	NA	NA|56aa|up_1|NZ_AP013103.1_5080721_5080889_-	PRK00595, rpmG, 50S ribosomal protein L33; Validated	NA|442aa|up_0|NZ_AP013103.1_5081017_5082343_-	TIGR03860, FMN_nitrolo, FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family	NA|250aa|down_0|NZ_AP013103.1_5082631_5083381_-	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes	NA|146aa|down_1|NZ_AP013103.1_5083417_5083855_-	PRK05978, PRK05978, hypothetical protein; Provisional	NA|787aa|down_2|NZ_AP013103.1_5083845_5086206_-	TIGR02063, Ribonuclease_R, ribonuclease R	NA|924aa|down_3|NZ_AP013103.1_5086206_5088978_-	PRK07561, PRK07561, DNA topoisomerase I subunit omega; Validated	NA|117aa|down_4|NZ_AP013103.1_5089198_5089549_-	NA	NA|158aa|down_5|NZ_AP013103.1_5089610_5090084_-	COG1733, COG1733, Predicted transcriptional regulators [Transcription]	NA|258aa|down_6|NZ_AP013103.1_5090193_5090967_+	PRK06500, PRK06500, SDR family oxidoreductase	NA|53aa|down_7|NZ_AP013103.1_5091221_5091380_+	NA	NA|203aa|down_8|NZ_AP013103.1_5091437_5092046_-	COG1182, AcpD, Acyl carrier protein phosphodiesterase [Lipid metabolism]	NA|137aa|down_9|NZ_AP013103.1_5092145_5092556_+	COG1733, COG1733, Predicted transcriptional regulators [Transcription]
GCF_012871055.1_ASM1287105v1	NZ_AP013103	Bradyrhizobium elkanii USDA 61	3	7983943-7984091	3	CRISPRCasFinder	no		DEDDh,csa3,WYL,RT,PD-DExK	Orphan	CAGCTGACCAGCCTGCCCGATCTTCCAGC	29	0	0	NA	NA	NA	2	2	Orphan	DEDDh,csa3,WYL,RT,PD-DExK	NA|80aa|up_3|NZ_AP013103.1_7978175_7978415_+,NA|82aa|up_2|NZ_AP013103.1_7978946_7979192_-,NA|54aa|up_1|NZ_AP013103.1_7979342_7979504_-,NA|69aa|down_6|NZ_AP013103.1_7994674_7994881_-	NA|397aa|up_9|NZ_AP013103.1_7968793_7969984_-	COG3791, COG3791, Uncharacterized conserved protein [Function unknown]	NA|451aa|up_8|NZ_AP013103.1_7971059_7972412_+	PRK15075, PRK15075, tricarballylate/proton symporter TcuC	NA|450aa|up_7|NZ_AP013103.1_7974139_7975489_+	pfam11902, DUF3422, Protein of unknown function (DUF3422)	NA|281aa|up_6|NZ_AP013103.1_7975734_7976577_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|59aa|up_5|NZ_AP013103.1_7977326_7977503_-	pfam05016, ParE_toxin, ParE toxin of type II toxin-antitoxin system, parDE	NA|93aa|up_4|NZ_AP013103.1_7977492_7977771_-	TIGR02606, Antitoxin_ParD, putative addiction module antidote protein, CC2985 family	NA|80aa|up_3|NZ_AP013103.1_7978175_7978415_+	NA	NA|82aa|up_2|NZ_AP013103.1_7978946_7979192_-	NA	NA|54aa|up_1|NZ_AP013103.1_7979342_7979504_-	NA	NA|282aa|up_0|NZ_AP013103.1_7981769_7982615_+	PRK08181, PRK08181, transposase; Validated	NA|504aa|down_0|NZ_AP013103.1_7984230_7985742_+	pfam00665, rve, Integrase core domain	NA|360aa|down_1|NZ_AP013103.1_7985971_7987051_+	pfam14496, NEL, C-terminal novel E3 ligase, LRR-interacting	NA|132aa|down_2|NZ_AP013103.1_7989923_7990319_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|66aa|down_3|NZ_AP013103.1_7990566_7990764_-	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|608aa|down_4|NZ_AP013103.1_7991214_7993038_-	TIGR01817, Nif-specific_regulatory_protein, Nif-specific regulatory protein	NA|279aa|down_5|NZ_AP013103.1_7993223_7994060_-	cd05233, SDR_c, classical (c) SDRs	NA|69aa|down_6|NZ_AP013103.1_7994674_7994881_-	NA	NA|371aa|down_7|NZ_AP013103.1_7994877_7995990_-	pfam05830, NodZ, Nodulation protein Z (NodZ)	NA|676aa|down_8|NZ_AP013103.1_7996160_7998188_-	COG2192, COG2192, Predicted carbamoyl transferase, NodU family [Posttranslational modification, protein turnover, chaperones]	NA|264aa|down_9|NZ_AP013103.1_7998464_7999256_-	TIGR01291, Nodulation_protein_J, ABC-2 type transporter, NodJ family
GCF_012871055.1_ASM1287105v1	NZ_AP013103	Bradyrhizobium elkanii USDA 61	4	8806010-8806218	1	PILER-CR	no		DEDDh,csa3,WYL,RT,PD-DExK	Orphan	GTCGACTGGTTCTGCGGCGAGTTCGCCTGACC	32	0	0	NA	NA	NA	2	2	Orphan	DEDDh,csa3,WYL,RT,PD-DExK	NA,NA|148aa|down_0|NZ_AP013103.1_8808170_8808614_+	NA|431aa|up_9|NZ_AP013103.1_8792883_8794176_+	cd06581, TM_PBP1_LivM_like, Transmembrane subunit (TM) of Escherichia coli LivM and related proteins	NA|250aa|up_8|NZ_AP013103.1_8794172_8794922_+	cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system	NA|232aa|up_7|NZ_AP013103.1_8794921_8795617_+	cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter	NA|311aa|up_6|NZ_AP013103.1_8795909_8796842_-	pfam12625, Arabinose_bd, Arabinose-binding domain of AraC transcription regulator, N-term	NA|1181aa|up_5|NZ_AP013103.1_8797569_8801112_-	TIGR02712, Includes:_Allophanate_hydrolase, urea carboxylase	NA|213aa|up_4|NZ_AP013103.1_8801115_8801754_-	TIGR03424, urea_degr_1, urea carboxylase-associated protein 1	NA|282aa|up_3|NZ_AP013103.1_8801750_8802596_-	TIGR03425, urea_degr_2, urea carboxylase-associated protein 2	NA|278aa|up_2|NZ_AP013103.1_8802592_8803426_-	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters	NA|273aa|up_1|NZ_AP013103.1_8803422_8804241_-	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|358aa|up_0|NZ_AP013103.1_8804273_8805347_-	TIGR03427, ABC_peri_uca, ABC transporter periplasmic binding protein, urea carboxylase region	NA|148aa|down_0|NZ_AP013103.1_8808170_8808614_+	NA	NA|253aa|down_1|NZ_AP013103.1_8808661_8809420_-	PRK14971, PRK14971, DNA polymerase III subunit gamma/tau	NA|178aa|down_2|NZ_AP013103.1_8809433_8809967_-	pfam06776, IalB, Invasion associated locus B (IalB) protein	NA|1446aa|down_3|NZ_AP013103.1_8810005_8814343_-	NF033477, EmaA_autotrans, collagen-binding adhesin autotransporter EmaA	NA|351aa|down_4|NZ_AP013103.1_8814680_8815733_-	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|305aa|down_5|NZ_AP013103.1_8816480_8817395_-	PRK11013, PRK11013, DNA-binding transcriptional regulator LysR; Provisional	NA|206aa|down_6|NZ_AP013103.1_8817463_8818081_+	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]	NA|120aa|down_7|NZ_AP013103.1_8818473_8818833_-	cd18160, REC_CpdR_CckA-like, phosphoacceptor receiver (REC) domain of Brucella abortus CpdR and CckA, and similar domains	NA|296aa|down_8|NZ_AP013103.1_8819138_8820026_+	COG3741, HutG, N-formylglutamate amidohydrolase [Amino acid transport and metabolism]	NA|260aa|down_9|NZ_AP013103.1_8820595_8821375_+	cd01641, Bacterial_IMPase_like_1, Predominantly bacterial family of Mg++ dependend phosphatases, related to inositol monophosphatases
