The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_AP013103	Bradyrhizobium elkanii USDA 61	9548186	85806	181352	9548186	protease,holin,transposase,integrase	Tetraselmis_virus(12.5%)	80	89588:89606	148980:148998
WP_172645854.1|85806_87537_+|protease	ATP-dependent Clp protease adaptor ClpS	protease	A0A2P0VNF3	Tetraselmis_virus	26.7	5.7e-09
WP_172648942.1|87544_89632_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
89588:89606	attL	CGCCGCGCGGCCCGCGCCG	NA	NA	NA	NA
WP_172645855.1|89971_90436_+	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
89588:89606	attL	CGCCGCGCGGCCCGCGCCG	NA	NA	NA	NA
WP_172648943.1|90482_91241_+	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_016848145.1|91286_91454_-	hypothetical protein	NA	NA	NA	NA	NA
WP_172645856.1|91504_91924_-	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_172645857.1|92002_92287_-	hypothetical protein	NA	NA	NA	NA	NA
WP_172645858.1|92365_92770_-	DUF3597 domain-containing protein	NA	NA	NA	NA	NA
WP_172645859.1|93052_93553_-	GTP-binding protein	NA	M1NN89	Moumouvirus	31.4	3.8e-06
WP_172645860.1|93552_95304_-	OmpA family protein	NA	NA	NA	NA	NA
WP_172648944.1|95305_95677_-	hypothetical protein	NA	NA	NA	NA	NA
WP_141713569.1|95831_96542_-	response regulator	NA	NA	NA	NA	NA
WP_018269506.1|96537_97608_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_069279178.1|97745_98171_+	hypothetical protein	NA	NA	NA	NA	NA
WP_016848135.1|98394_98847_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_172645861.1|98888_99503_+	isochorismatase family protein	NA	NA	NA	NA	NA
WP_016848133.1|99489_99819_+	hypothetical protein	NA	NA	NA	NA	NA
WP_016848131.1|101147_101339_-	hypothetical protein	NA	NA	NA	NA	NA
WP_172648945.1|101717_102425_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_172645862.1|102444_103416_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_028340412.1|103458_104475_+	sugar ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_172645863.1|104552_106676_+	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA	NA
WP_172645864.1|106672_107770_+	hypothetical protein	NA	NA	NA	NA	NA
WP_069279185.1|107766_109263_+	sugar ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	30.1	4.6e-15
WP_172645865.1|109380_109755_-	hypothetical protein	NA	NA	NA	NA	NA
WP_016848120.1|109805_110072_-	hypothetical protein	NA	NA	NA	NA	NA
WP_016848119.1|110079_110889_-	sterol desaturase family protein	NA	NA	NA	NA	NA
WP_172645866.1|111043_111301_+	recombinase family protein	NA	M9Q1K0	Clostridium_phage	57.4	1.6e-05
WP_172645867.1|111718_113020_+|integrase	integrase family protein	integrase	NA	NA	NA	NA
WP_172645868.1|113407_113983_-	hypothetical protein	NA	NA	NA	NA	NA
WP_172645869.1|116114_117060_+|transposase	IS630 family transposase	transposase	A0A2P0VP61	Tetraselmis_virus	23.7	1.6e-13
WP_172648946.1|117185_118388_+	acyltransferase	NA	NA	NA	NA	NA
WP_028182369.1|118828_120433_-|transposase	IS66-like element ISBj7 family transposase	transposase	A0A218MNE7	uncultured_virus	33.7	6.1e-66
WP_172648947.1|120505_120775_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA	NA
WP_172645870.1|121136_122858_+|transposase	IS21 family transposase	transposase	NA	NA	NA	NA
122198:122216	attR	CGCCGCGCGGCCCGCGCCG	NA	NA	NA	NA
WP_038952109.1|122862_123630_+	ATP-binding protein	NA	A0A2L1IVB6	Escherichia_phage	27.4	2.7e-19
122198:122216	attR	CGCCGCGCGGCCCGCGCCG	NA	NA	NA	NA
WP_172645871.1|123892_125098_-|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
WP_172648948.1|125109_125991_-|integrase	site-specific integrase	integrase	S5W9T9	Leptospira_phage	31.8	9.2e-32
WP_172645872.1|126259_126673_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_172645873.1|127656_129723_-	recombinase family protein	NA	NA	NA	NA	NA
WP_172645874.1|129715_130468_-	helix-turn-helix domain containing protein	NA	NA	NA	NA	NA
WP_097669842.1|130632_130893_-	hypothetical protein	NA	NA	NA	NA	NA
WP_172645875.1|135200_135809_-|integrase	site-specific integrase	integrase	A0A142F1N9	Bacillus_phage	22.0	7.8e-06
WP_172645876.1|135805_136720_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A2D1GBB1	Mycobacterium_phage	28.6	2.0e-05
WP_172645877.1|136719_137958_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_157158178.1|138168_138540_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_172645878.1|138624_139512_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_172645879.1|140009_140432_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_018273742.1|140428_140785_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA	NA
WP_172645880.1|140835_142386_+|transposase	IS66 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	38.7	1.0e-81
WP_172648949.1|142433_143033_+	UPF0149 family protein	NA	NA	NA	NA	NA
WP_172648950.1|144558_145482_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_172645881.1|145445_145703_-	DUF2274 domain-containing protein	NA	NA	NA	NA	NA
WP_172645882.1|145699_146902_-	TrbI/VirB10 family protein	NA	NA	NA	NA	NA
WP_172645883.1|146892_147972_-	P-type conjugative transfer protein TrbG	NA	NA	NA	NA	NA
WP_172645884.1|147968_148658_-	conjugal transfer protein TrbF	NA	NA	NA	NA	NA
WP_172645885.1|148661_150023_-	P-type conjugative transfer protein TrbL	NA	NA	NA	NA	NA
WP_172645886.1|150019_150340_-	putative entry exclusion protein TrbK-alt	NA	NA	NA	NA	NA
WP_172645887.1|150350_151109_-	P-type conjugative transfer protein TrbJ	NA	NA	NA	NA	NA
WP_172645888.1|151105_153544_-	conjugal transfer protein TrbE	NA	NA	NA	NA	NA
WP_172645889.1|153551_153827_-	VirB3 family type IV secretion system protein	NA	NA	NA	NA	NA
WP_172645890.1|153826_154168_-	TrbC/VIRB2 family protein	NA	NA	NA	NA	NA
WP_172645891.1|154164_155163_-	P-type conjugative transfer ATPase TrbB	NA	NA	NA	NA	NA
WP_172645892.1|155962_156775_+|holin	phosphocholine cytidylyltransferase family protein	holin	M1I5S4	Acanthocystis_turfacea_Chlorella_virus	26.5	3.6e-06
WP_172645893.1|157458_158571_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_172645894.1|158830_160042_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_172645895.1|160595_161798_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	A0A0P0YLZ6	Yellowstone_lake_phycodnavirus	32.0	2.0e-05
WP_172645896.1|162606_163227_+	CDP-alcohol phosphatidyltransferase family protein	NA	NA	NA	NA	NA
WP_172645897.1|163260_164397_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_172645898.1|164407_165250_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_172645899.1|165246_166242_+	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_172645900.1|166354_166525_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_172645901.1|166724_168563_+	hypothetical protein	NA	NA	NA	NA	NA
WP_172645902.1|169407_170217_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_172645903.1|170910_171678_-	ATP-binding protein	NA	A0A2L1IVB6	Escherichia_phage	27.8	1.6e-19
WP_172645904.1|173469_174105_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_172645905.1|174705_176040_-|transposase	IS5 family transposase	transposase	K4ICS3	Acidithiobacillus_phage	44.4	3.3e-49
WP_172645906.1|176494_177664_-	beta-lactamase family protein	NA	NA	NA	NA	NA
WP_172645907.1|178416_179262_-	ATP-binding protein	NA	U5N3V8	Enterobacteria_phage	35.0	2.9e-35
WP_172648951.1|179222_181352_-|transposase	IS21 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_AP013103	Bradyrhizobium elkanii USDA 61	9548186	2025116	2096113	9548186	transposase	Paenibacillus_phage(25.0%)	45	NA	NA
WP_172649038.1|2025116_2026676_+|transposase	IS66 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	38.4	7.0e-83
WP_172646725.1|2026705_2027275_+	YecA family protein	NA	NA	NA	NA	NA
WP_172646726.1|2027731_2028244_+	YecA family protein	NA	NA	NA	NA	NA
WP_129964753.1|2028787_2029544_+|transposase	IS5 family transposase	transposase	A0A0N9SHJ4	Paenibacillus_phage	33.9	8.8e-15
WP_172646727.1|2033978_2034188_-	hypothetical protein	NA	NA	NA	NA	NA
WP_129964839.1|2034838_2036581_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	32.4	1.9e-25
WP_129964838.1|2036798_2038142_-|transposase	IS1380 family transposase	transposase	NA	NA	NA	NA
WP_172646728.1|2040227_2041337_-	hypothetical protein	NA	NA	NA	NA	NA
WP_172646729.1|2044896_2045526_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_028344151.1|2046471_2047494_-	hypothetical protein	NA	NA	NA	NA	NA
WP_028344152.1|2047486_2048056_-	hypothetical protein	NA	NA	NA	NA	NA
WP_028344153.1|2048052_2049015_-	hypothetical protein	NA	NA	NA	NA	NA
WP_028344154.1|2049011_2050217_-	hypothetical protein	NA	NA	NA	NA	NA
WP_035633305.1|2050235_2051033_-	DUF3050 domain-containing protein	NA	A0A1L7N1A4	Ralstonia_phage	36.2	1.2e-30
WP_028344156.1|2051054_2052242_-	hypothetical protein	NA	NA	NA	NA	NA
WP_028344157.1|2052238_2054236_-	B12-binding domain-containing radical SAM protein	NA	NA	NA	NA	NA
WP_028344158.1|2054251_2055598_-	radical SAM protein	NA	NA	NA	NA	NA
WP_051448133.1|2055597_2056533_-	hypothetical protein	NA	NA	NA	NA	NA
WP_051448134.1|2056522_2057377_-	hypothetical protein	NA	NA	NA	NA	NA
WP_155258764.1|2057379_2058747_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_028344159.1|2058750_2060619_-	alkaline phosphatase family protein	NA	NA	NA	NA	NA
WP_172646730.1|2060651_2061113_-	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_172646731.1|2061313_2062225_-	hypothetical protein	NA	NA	NA	NA	NA
WP_051448136.1|2062324_2063530_-	S8 family serine peptidase	NA	NA	NA	NA	NA
WP_172646732.1|2066802_2068071_-|transposase	IS256 family transposase	transposase	A0A2P1JQX9	Mycobacterium_phage	46.7	4.2e-94
WP_035633702.1|2069033_2070413_+	aspartate aminotransferase family protein	NA	NA	NA	NA	NA
WP_028344453.1|2072148_2073297_+	N-methyl-L-tryptophan oxidase	NA	NA	NA	NA	NA
WP_172646733.1|2074664_2075432_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_028343854.1|2075708_2076707_+	P-type conjugative transfer ATPase TrbB	NA	NA	NA	NA	NA
WP_028343855.1|2076703_2077045_+	TrbC/VIRB2 family protein	NA	NA	NA	NA	NA
WP_172645889.1|2077044_2077320_+	VirB3 family type IV secretion system protein	NA	NA	NA	NA	NA
WP_080686996.1|2079681_2079948_-	DUF3892 domain-containing protein	NA	NA	NA	NA	NA
WP_028344413.1|2082624_2083026_+	hypothetical protein	NA	NA	NA	NA	NA
WP_172645828.1|2083150_2083333_-	hypothetical protein	NA	NA	NA	NA	NA
WP_129964766.1|2083538_2083853_+	hypothetical protein	NA	NA	NA	NA	NA
WP_051448168.1|2083892_2085662_+	hypothetical protein	NA	M4QHP6	Synechococcus_phage	30.8	2.9e-61
WP_129964765.1|2085630_2086284_+	hypothetical protein	NA	A0A1D8KT39	Synechococcus_phage	32.0	2.1e-09
WP_129964764.1|2086320_2087037_+	hypothetical protein	NA	NA	NA	NA	NA
WP_129964762.1|2091494_2091734_-	hypothetical protein	NA	NA	NA	NA	NA
WP_129964761.1|2091711_2092173_-	hypothetical protein	NA	NA	NA	NA	NA
WP_155258820.1|2092710_2092884_-	hypothetical protein	NA	NA	NA	NA	NA
WP_129964760.1|2093517_2093766_-	hypothetical protein	NA	NA	NA	NA	NA
WP_129964759.1|2094291_2095053_+	hypothetical protein	NA	NA	NA	NA	NA
WP_129964758.1|2095069_2095279_+	hypothetical protein	NA	NA	NA	NA	NA
WP_129964753.1|2095355_2096113_-|transposase	IS5 family transposase	transposase	A0A0N9SHJ4	Paenibacillus_phage	33.9	8.8e-15
>prophage 3
NZ_AP013103	Bradyrhizobium elkanii USDA 61	9548186	2099246	2168725	9548186	integrase,transposase	Stx2-converting_phage(20.0%)	46	2133443:2133472	2136856:2136885
WP_028344449.1|2099246_2100806_+|transposase	IS66 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	38.2	3.5e-82
WP_080687004.1|2101084_2102296_-|transposase	IS701 family transposase	transposase	NA	NA	NA	NA
WP_129964753.1|2102357_2103115_-|transposase	IS5 family transposase	transposase	A0A0N9SHJ4	Paenibacillus_phage	33.9	8.8e-15
WP_080686981.1|2103172_2103700_+	YecA family protein	NA	NA	NA	NA	NA
WP_051448141.1|2104550_2105756_+	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_028344310.1|2105755_2107726_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_038387930.1|2107784_2108822_+	hypothetical protein	NA	NA	NA	NA	NA
WP_028344308.1|2110297_2110693_-|integrase	site-specific integrase	integrase	NA	NA	NA	NA
WP_028344311.1|2111286_2111601_+	hypothetical protein	NA	NA	NA	NA	NA
WP_125459452.1|2112233_2112509_+	hypothetical protein	NA	NA	NA	NA	NA
WP_155258786.1|2112547_2112721_-	hypothetical protein	NA	NA	NA	NA	NA
WP_155258785.1|2115524_2115701_+	hypothetical protein	NA	NA	NA	NA	NA
WP_028344307.1|2115693_2117763_+	recombinase family protein	NA	NA	NA	NA	NA
WP_028342889.1|2119872_2120172_-	hypothetical protein	NA	NA	NA	NA	NA
WP_028342888.1|2120513_2120933_-	hypothetical protein	NA	NA	NA	NA	NA
WP_155258667.1|2121357_2123049_-	hypothetical protein	NA	NA	NA	NA	NA
WP_075969173.1|2123706_2124111_-	VOC family protein	NA	NA	NA	NA	NA
WP_129964749.1|2125485_2125698_-	hypothetical protein	NA	NA	NA	NA	NA
WP_129964748.1|2126060_2126303_-	hypothetical protein	NA	NA	NA	NA	NA
WP_075969178.1|2126724_2126991_+	DUF3892 domain-containing protein	NA	NA	NA	NA	NA
WP_028342886.1|2127788_2128151_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_155258666.1|2131282_2131693_+	hypothetical protein	NA	NA	NA	NA	NA
WP_028342883.1|2131684_2131870_-	hypothetical protein	NA	NA	NA	NA	NA
2133443:2133472	attL	GACTTATGTGGAGCGCACAGTGATGTGGAG	NA	NA	NA	NA
WP_035632400.1|2133573_2134791_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A0F6SJK8	Mycobacterium_phage	29.1	9.2e-06
WP_028342882.1|2134787_2135765_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_028342881.1|2135761_2136787_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_085967261.1|2138190_2138490_+	Y4bD/Y4pK family protein	NA	NA	NA	NA	NA
2136856:2136885	attR	CTCCACATCACTGTGCGCTCCACATAAGTC	NA	NA	NA	NA
WP_028342877.1|2138688_2139177_+	helix-turn-helix domain containing protein	NA	NA	NA	NA	NA
WP_028342876.1|2139556_2141623_+	recombinase family protein	NA	NA	NA	NA	NA
WP_028342875.1|2142691_2142886_+	hypothetical protein	NA	NA	NA	NA	NA
WP_028342874.1|2145322_2146816_+	radical SAM protein	NA	NA	NA	NA	NA
WP_028342873.1|2146827_2148153_+	radical SAM protein	NA	A0A1L7N0Q5	Ralstonia_phage	26.7	1.5e-06
WP_129964744.1|2148159_2149212_+	hypothetical protein	NA	NA	NA	NA	NA
WP_016842001.1|2149233_2149866_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_016843092.1|2152671_2152851_+	hypothetical protein	NA	NA	NA	NA	NA
WP_028342871.1|2153365_2154520_+	hypothetical protein	NA	NA	NA	NA	NA
WP_028342869.1|2155303_2155810_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_172646734.1|2158547_2158721_+	hypothetical protein	NA	NA	NA	NA	NA
WP_155258664.1|2158726_2158870_-	hypothetical protein	NA	NA	NA	NA	NA
WP_028342865.1|2160162_2160483_-	hypothetical protein	NA	NA	NA	NA	NA
WP_028342864.1|2161013_2161379_+	hypothetical protein	NA	NA	NA	NA	NA
WP_129964743.1|2162259_2162568_-	hypothetical protein	NA	NA	NA	NA	NA
WP_051448031.1|2163022_2163358_-	hypothetical protein	NA	NA	NA	NA	NA
WP_028342862.1|2163504_2163723_+	hypothetical protein	NA	NA	NA	NA	NA
WP_028342859.1|2165657_2166008_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_172646735.1|2168428_2168725_+|transposase	transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	52.4	1.1e-18
>prophage 4
NZ_AP013103	Bradyrhizobium elkanii USDA 61	9548186	4734078	4792843	9548186	plate,transposase	Ralstonia_phage(25.0%)	48	NA	NA
WP_018272203.1|4734078_4735143_-|plate	type VI secretion system baseplate subunit TssG	plate	NA	NA	NA	NA
WP_038380498.1|4735106_4737074_-|plate	type VI secretion system baseplate subunit TssF	plate	NA	NA	NA	NA
WP_026192914.1|4737075_4737624_-|plate	type VI secretion system baseplate subunit TssE	plate	NA	NA	NA	NA
WP_016843423.1|4737692_4738178_-	type VI secretion system tube protein Hcp	NA	NA	NA	NA	NA
WP_018272201.1|4738231_4739734_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA	NA
WP_016843425.1|4739751_4740279_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA	NA
WP_038380497.1|4740408_4741722_-	type VI secretion system ImpA family N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_172647751.1|4742071_4743940_+	type VI secretion system tip protein VgrG	NA	A0A077K8Q4	Ralstonia_phage	28.6	2.0e-44
WP_016843428.1|4743945_4744509_+	hypothetical protein	NA	NA	NA	NA	NA
WP_018272198.1|4744521_4745898_+	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA	NA
WP_018272197.1|4745946_4747284_+|plate	type VI secretion system baseplate subunit TssK	plate	NA	NA	NA	NA
WP_026192913.1|4747280_4748807_+	type VI secretion system protein TssL	NA	NA	NA	NA	NA
WP_172647752.1|4748852_4752401_+	type VI secretion system membrane subunit TssM	NA	NA	NA	NA	NA
WP_018272194.1|4752397_4753099_+	type VI secretion system-associated protein TagF	NA	NA	NA	NA	NA
WP_026192912.1|4753105_4753882_+	serine/threonine-protein phosphatase	NA	NA	NA	NA	NA
WP_018272193.1|4753878_4755684_+	serine/threonine protein kinase	NA	A0A0M3SGV8	Mollivirus	30.7	2.7e-14
WP_026192911.1|4755692_4756673_-	DUF4424 domain-containing protein	NA	NA	NA	NA	NA
WP_018272191.1|4756761_4757043_-	hypothetical protein	NA	NA	NA	NA	NA
WP_026192910.1|4757214_4758939_+	hypothetical protein	NA	NA	NA	NA	NA
WP_172647753.1|4759095_4760874_+	caspase family protein	NA	NA	NA	NA	NA
WP_026192908.1|4760894_4761539_+	DUF4384 domain-containing protein	NA	NA	NA	NA	NA
WP_038380494.1|4761676_4763434_-	caspase family protein	NA	NA	NA	NA	NA
WP_018272186.1|4764145_4764703_+	hypothetical protein	NA	NA	NA	NA	NA
WP_018272185.1|4764790_4765246_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_016844367.1|4765322_4765517_+	hypothetical protein	NA	NA	NA	NA	NA
WP_038380492.1|4765562_4766558_-	phosphotransferase	NA	NA	NA	NA	NA
WP_080583245.1|4766685_4767156_+	copper chaperone PCu(A)C	NA	NA	NA	NA	NA
WP_038380491.1|4767321_4769064_+	PQQ-dependent dehydrogenase, methanol/ethanol family	NA	NA	NA	NA	NA
WP_172649155.1|4769184_4769679_+	c-type cytochrome	NA	NA	NA	NA	NA
WP_038380489.1|4769705_4770302_+	hypothetical protein	NA	NA	NA	NA	NA
WP_172647754.1|4770362_4772036_-	bifunctional protein-serine/threonine kinase/phosphatase	NA	B0FEC2	Escherichia_phage	23.8	3.7e-13
WP_026192906.1|4772099_4773359_-	NarK/NasA family nitrate transporter	NA	NA	NA	NA	NA
WP_129965108.1|4773487_4773814_+	hypothetical protein	NA	NA	NA	NA	NA
WP_038380485.1|4773996_4776456_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_038380484.1|4776452_4776782_+	nitrite reductase small subunit NirD	NA	NA	NA	NA	NA
WP_038380483.1|4776798_4779462_+	nitrate reductase	NA	NA	NA	NA	NA
WP_018272174.1|4779722_4780178_+	lipocalin-like domain-containing protein	NA	NA	NA	NA	NA
WP_018272173.1|4780471_4781416_+	amidohydrolase	NA	NA	NA	NA	NA
WP_018272172.1|4781523_4781766_-	hypothetical protein	NA	NA	NA	NA	NA
WP_018272171.1|4782037_4783264_+	CoA transferase	NA	NA	NA	NA	NA
WP_028339340.1|4783502_4783898_+	RidA family protein	NA	NA	NA	NA	NA
WP_038380482.1|4784133_4784823_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_038380481.1|4785080_4786313_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_018272167.1|4786503_4787562_+	phosphotransferase family protein	NA	NA	NA	NA	NA
WP_038380480.1|4787925_4788840_+	DMT family transporter	NA	NA	NA	NA	NA
WP_018272165.1|4788952_4790122_-	acetylornithine deacetylase	NA	NA	NA	NA	NA
WP_172646541.1|4790441_4791383_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_172647755.1|4791808_4792843_-|transposase	IS110 family transposase	transposase	A0A1S7J231	Thermus_phage	28.9	2.7e-14
>prophage 5
NZ_AP013103	Bradyrhizobium elkanii USDA 61	9548186	5049835	5103883	9548186	protease,transposase,tRNA	uncultured_Mediterranean_phage(10.0%)	55	NA	NA
WP_026192863.1|5049835_5050168_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	42.7	2.3e-12
WP_026192862.1|5050428_5052834_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	44.0	1.8e-175
WP_018272010.1|5052933_5054355_-	MFS transporter	NA	NA	NA	NA	NA
WP_016848266.1|5054480_5054834_-	PilZ domain-containing protein	NA	NA	NA	NA	NA
WP_018272009.1|5054998_5055955_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_018272008.1|5056162_5057173_+	carbon-nitrogen hydrolase family protein	NA	NA	NA	NA	NA
WP_041482663.1|5057260_5058313_+	phenylacetaldoxime dehydratase family protein	NA	NA	NA	NA	NA
WP_051110178.1|5058654_5059830_+|transposase	IS4 family transposase	transposase	NA	NA	NA	NA
WP_026191947.1|5059882_5060707_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_018272005.1|5060920_5061850_-	glycine reductase	NA	NA	NA	NA	NA
WP_018272004.1|5061972_5063049_+	lytic transglycosylase domain-containing protein	NA	A0A077KC92	Edwardsiella_phage	37.6	1.3e-06
WP_018272003.1|5063243_5063996_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_018272002.1|5063992_5064337_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_026192859.1|5064398_5065379_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_026192858.1|5065382_5065874_+|tRNA	tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO	tRNA	NA	NA	NA	NA
WP_018271999.1|5065988_5066414_-	HIT family protein	NA	NA	NA	NA	NA
WP_018271998.1|5066466_5067717_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_018271997.1|5067873_5068626_-	glycerophosphoryl diester phosphodiesterase	NA	NA	NA	NA	NA
WP_016845428.1|5068629_5069097_-	RidA family protein	NA	M1IDR7	Acanthocystis_turfacea_Chlorella_virus	48.0	1.3e-29
WP_018271996.1|5069362_5070229_+	cell envelope integrity EipB family protein	NA	NA	NA	NA	NA
WP_018271995.1|5070457_5070859_+	RidA family protein	NA	NA	NA	NA	NA
WP_018271994.1|5071002_5072322_-	DNA polymerase IV	NA	NA	NA	NA	NA
WP_016845967.1|5072300_5072600_-	DUF3572 domain-containing protein	NA	NA	NA	NA	NA
WP_016845968.1|5072828_5073194_+	response regulator	NA	Q6XM27	Feldmannia_irregularis_virus	28.3	4.7e-06
WP_016845969.1|5073209_5074583_+	PleD family two-component system response regulator	NA	A0A127AWB9	Bacillus_phage	34.3	1.8e-21
WP_041482874.1|5074664_5075813_-	serine hydrolase	NA	NA	NA	NA	NA
WP_026192855.1|5076018_5076621_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_018271992.1|5076754_5077987_+	MFS transporter	NA	NA	NA	NA	NA
WP_100213858.1|5078490_5079885_+	ammonium transporter	NA	NA	NA	NA	NA
WP_016845975.1|5079887_5080085_+	hypothetical protein	NA	NA	NA	NA	NA
WP_018271989.1|5080081_5080612_-	hypothetical protein	NA	NA	NA	NA	NA
WP_018271988.1|5080721_5080889_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_018271987.1|5081017_5082343_-	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_172647830.1|5082392_5082620_+	hypothetical protein	NA	NA	NA	NA	NA
WP_016848393.1|5082631_5083381_-	NUDIX domain-containing protein	NA	NA	NA	NA	NA
WP_018271985.1|5083417_5083855_-	DUF983 domain-containing protein	NA	NA	NA	NA	NA
WP_018271984.1|5083845_5086206_-	ribonuclease R	NA	NA	NA	NA	NA
WP_018271983.1|5086206_5088978_-	type I DNA topoisomerase	NA	A0A0G2Y787	Acanthamoeba_polyphaga_mimivirus	31.5	8.5e-100
WP_157183463.1|5089198_5089549_-	hypothetical protein	NA	NA	NA	NA	NA
WP_018271981.1|5089610_5090084_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_018271980.1|5090193_5090967_+	glucose 1-dehydrogenase	NA	A0A0M4JSW6	Mollivirus	27.7	1.5e-09
WP_016843954.1|5091221_5091380_+	hypothetical protein	NA	NA	NA	NA	NA
WP_018271979.1|5091437_5092046_-	FMN-dependent NADH-azoreductase	NA	NA	NA	NA	NA
WP_018271978.1|5092145_5092556_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_018271977.1|5092751_5093867_-	DNA-protecting protein DprA	NA	S6BFL3	Thermus_phage	44.3	3.4e-23
WP_018271976.1|5093992_5095231_+	amidase	NA	NA	NA	NA	NA
WP_018271975.1|5095239_5095836_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_018271974.1|5096060_5097362_-	dihydroorotase	NA	NA	NA	NA	NA
WP_026192854.1|5097366_5098320_-	aspartate carbamoyltransferase catalytic subunit	NA	A7RB08	Paramecium_bursaria_Chlorella_virus	34.4	8.4e-31
WP_172649159.1|5098589_5099324_+	M15 family metallopeptidase	NA	NA	NA	NA	NA
WP_018271972.1|5099450_5099864_+	hypothetical protein	NA	NA	NA	NA	NA
WP_016843964.1|5099896_5100349_+	hypothetical protein	NA	NA	NA	NA	NA
WP_018271971.1|5100509_5102153_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_018271970.1|5102281_5103052_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_080650431.1|5103289_5103883_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
>prophage 6
NZ_AP013103	Bradyrhizobium elkanii USDA 61	9548186	5188625	5235795	9548186	transposase	Bradyrhizobium_phage(86.0%)	77	NA	NA
WP_035631661.1|5188625_5188961_+	integration host factor subunit alpha	NA	A0A1P8CWT5	Bacillus_phage	34.8	2.4e-09
WP_018271909.1|5189088_5189682_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_035631640.1|5190044_5190272_-	AlpA family phage regulatory protein	NA	A0A1X9SGM8	Bradyrhizobium_phage	58.7	6.9e-16
WP_172647836.1|5190268_5190592_-	hypothetical protein	NA	A0A1X9SH09	Bradyrhizobium_phage	56.5	3.3e-27
WP_172649161.1|5190588_5191665_-	FAD-dependent thymidylate synthase	NA	A0A1X9SGW9	Bradyrhizobium_phage	62.6	3.8e-120
WP_172647837.1|5191678_5191858_-	hypothetical protein	NA	A0A1X9SGV6	Bradyrhizobium_phage	62.7	3.4e-10
WP_172647838.1|5191854_5192019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_172647839.1|5192015_5192513_-	hypothetical protein	NA	A0A1X9SH26	Bradyrhizobium_phage	39.1	5.7e-23
WP_172647840.1|5192585_5193473_-	TRAP transporter substrate-binding protein	NA	A0A1X9SGU1	Bradyrhizobium_phage	83.4	5.8e-135
WP_155258514.1|5193662_5194091_-	hypothetical protein	NA	NA	NA	NA	NA
WP_051447887.1|5194116_5194383_-	hypothetical protein	NA	J7FAQ6	Agrobacterium_phage	53.9	2.9e-21
WP_172647841.1|5194496_5194826_-	hypothetical protein	NA	A0A1X9SGM2	Bradyrhizobium_phage	77.6	3.1e-41
WP_172647842.1|5195015_5198444_-	adenosylcobalamin-dependent ribonucleoside-diphosphate reductase	NA	A0A1X9SGV9	Bradyrhizobium_phage	71.2	0.0e+00
WP_028340927.1|5198473_5198803_-	hypothetical protein	NA	NA	NA	NA	NA
WP_172647843.1|5199001_5199505_-	hypothetical protein	NA	A0A1X9SGT2	Bradyrhizobium_phage	65.7	2.0e-55
WP_172647844.1|5199723_5200167_-	hypothetical protein	NA	A0A1X9SGS3	Bradyrhizobium_phage	69.5	2.0e-51
WP_172647845.1|5200163_5200493_-	hypothetical protein	NA	A0A1X9SGL8	Bradyrhizobium_phage	66.1	2.4e-33
WP_035631636.1|5200489_5200750_-	hypothetical protein	NA	A0A1X9SGK7	Bradyrhizobium_phage	90.6	1.6e-40
WP_172647846.1|5200746_5201187_-	hypothetical protein	NA	A0A1X9SGT0	Bradyrhizobium_phage	53.8	1.4e-36
WP_172647847.1|5201186_5201681_-	hypothetical protein	NA	A0A1X9SGY2	Bradyrhizobium_phage	66.9	2.8e-54
WP_028340922.1|5201677_5201875_-	hypothetical protein	NA	NA	NA	NA	NA
WP_172647848.1|5202132_5202942_-	hypothetical protein	NA	A0A1X9SGU5	Bradyrhizobium_phage	63.8	2.3e-74
WP_172647849.1|5202957_5203914_-	YqaJ viral recombinase family protein	NA	A0A1X9SGT6	Bradyrhizobium_phage	64.7	1.0e-100
WP_172647850.1|5203928_5204606_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	63.7	3.1e-80
WP_028340920.1|5204602_5204842_-	hypothetical protein	NA	NA	NA	NA	NA
WP_172647851.1|5204831_5205779_-	radical SAM protein	NA	NA	NA	NA	NA
WP_172647852.1|5205775_5206363_-	hypothetical protein	NA	A0A1X9SGK6	Bradyrhizobium_phage	77.6	2.4e-84
WP_172647853.1|5206340_5206691_-	hypothetical protein	NA	A0A1X9SGR1	Bradyrhizobium_phage	54.4	5.4e-28
WP_028340916.1|5206690_5207086_-	hypothetical protein	NA	NA	NA	NA	NA
WP_172647854.1|5207201_5207810_-	single-stranded DNA-binding protein	NA	A0A1X9SGJ7	Bradyrhizobium_phage	62.3	1.8e-39
WP_172647855.1|5207871_5209437_-	AAA family ATPase	NA	A0A1X9SGS1	Bradyrhizobium_phage	72.0	8.5e-222
WP_028340914.1|5209641_5210478_-	helix-turn-helix domain-containing protein	NA	A0A1X9SGX1	Bradyrhizobium_phage	67.0	9.6e-31
WP_172647856.1|5210561_5211203_+	hypothetical protein	NA	A0A1X9SGT4	Bradyrhizobium_phage	56.8	1.3e-56
WP_155258510.1|5211451_5212171_+	hypothetical protein	NA	A0A1X9SGS6	Bradyrhizobium_phage	59.8	7.7e-69
WP_172647857.1|5212182_5212464_-	hypothetical protein	NA	NA	NA	NA	NA
WP_028340910.1|5212552_5212777_-	hypothetical protein	NA	A0A1X9SGR2	Bradyrhizobium_phage	63.3	1.7e-11
WP_172647858.1|5212987_5213182_-	hypothetical protein	NA	NA	NA	NA	NA
WP_172647859.1|5213192_5213330_-	hypothetical protein	NA	NA	NA	NA	NA
WP_172646745.1|5213340_5214572_-|transposase	IS3 family transposase	transposase	Q8W6R2	Burkholderia_virus	68.6	3.9e-105
WP_172647860.1|5214537_5214789_-	hypothetical protein	NA	A0A1X9SGJ8	Bradyrhizobium_phage	54.5	5.6e-11
WP_172647861.1|5214781_5215153_-	hypothetical protein	NA	A0A1X9SGQ0	Bradyrhizobium_phage	45.5	1.2e-22
WP_172647862.1|5215149_5215395_-	hypothetical protein	NA	NA	NA	NA	NA
WP_172647863.1|5215394_5215589_-	hypothetical protein	NA	NA	NA	NA	NA
WP_155258508.1|5215585_5215747_-	hypothetical protein	NA	NA	NA	NA	NA
WP_051447876.1|5215746_5216505_-	hypothetical protein	NA	A0A1X9SGS4	Bradyrhizobium_phage	67.1	1.8e-100
WP_172647864.1|5216522_5216882_-	hypothetical protein	NA	F8TV33	EBPR_siphovirus	56.5	7.8e-30
WP_172647865.1|5216884_5218000_-	hypothetical protein	NA	A0A1B0V206	Roseobacter_phage	40.2	8.0e-65
WP_172647866.1|5218037_5219621_-	ATP-dependent helicase	NA	A0A1X9SGY1	Bradyrhizobium_phage	62.7	1.3e-182
WP_172647867.1|5219671_5220001_-	hypothetical protein	NA	A0A1X9SGQ1	Bradyrhizobium_phage	68.5	1.6e-29
WP_172647868.1|5220000_5220372_-	hypothetical protein	NA	A0A1X9SGI8	Bradyrhizobium_phage	44.4	1.1e-18
WP_172647869.1|5220364_5220736_-	hypothetical protein	NA	NA	NA	NA	NA
WP_155258506.1|5220739_5221039_-	hypothetical protein	NA	A0A2L0UZQ1	Agrobacterium_phage	30.1	4.1e-08
WP_172647870.1|5221209_5221698_-	hypothetical protein	NA	A0A1X9SGR4	Bradyrhizobium_phage	67.1	1.1e-50
WP_172647871.1|5221712_5223938_-	hypothetical protein	NA	A0A1X9SGQ5	Bradyrhizobium_phage	50.8	2.2e-207
WP_028340894.1|5223978_5224983_-	hypothetical protein	NA	A0A1X9SGX2	Bradyrhizobium_phage	55.4	2.6e-91
WP_172647872.1|5224999_5226604_-	hypothetical protein	NA	A0A1X9SGP2	Bradyrhizobium_phage	51.5	5.6e-120
WP_172647873.1|5227220_5227412_-	hypothetical protein	NA	A0A1X9SGG9	Bradyrhizobium_phage	69.5	6.8e-17
WP_028344211.1|5227395_5227581_-	hypothetical protein	NA	NA	NA	NA	NA
WP_172647874.1|5227582_5228287_-	hypothetical protein	NA	A0A1X9SGI3	Bradyrhizobium_phage	39.1	1.2e-29
WP_155258773.1|5228465_5228762_-	hypothetical protein	NA	NA	NA	NA	NA
WP_172647875.1|5228758_5229136_-	hypothetical protein	NA	NA	NA	NA	NA
WP_172647876.1|5229132_5229405_-	hypothetical protein	NA	NA	NA	NA	NA
WP_172647877.1|5229463_5230510_-	hypothetical protein	NA	NA	NA	NA	NA
WP_172647878.1|5230678_5231131_+	hypothetical protein	NA	A0A1X9SH21	Bradyrhizobium_phage	51.1	3.4e-22
WP_172647879.1|5231145_5231340_-	hypothetical protein	NA	NA	NA	NA	NA
WP_172647880.1|5231339_5231606_-	hypothetical protein	NA	NA	NA	NA	NA
WP_172647881.1|5231661_5232171_-	hypothetical protein	NA	NA	NA	NA	NA
WP_172647882.1|5232190_5232568_-	hypothetical protein	NA	NA	NA	NA	NA
WP_172647883.1|5232564_5232861_-	hypothetical protein	NA	A0A1X9SGR8	Bradyrhizobium_phage	72.1	1.6e-12
WP_172647884.1|5232857_5233061_-	hypothetical protein	NA	NA	NA	NA	NA
WP_172647885.1|5233050_5233275_-	hypothetical protein	NA	A0A1X9SH72	Bradyrhizobium_phage	48.4	6.2e-09
WP_028344196.1|5233258_5233522_-	hypothetical protein	NA	L7TP76	Rhizobium_phage	50.0	1.2e-11
WP_172647886.1|5233523_5234006_-	hypothetical protein	NA	A0A1X9SGP0	Bradyrhizobium_phage	35.1	1.7e-08
WP_172647887.1|5234005_5234602_-	hypothetical protein	NA	A0A1X9SH15	Bradyrhizobium_phage	66.0	1.2e-75
WP_028344193.1|5234603_5234981_-	hypothetical protein	NA	NA	NA	NA	NA
WP_172647888.1|5234983_5235160_-	hypothetical protein	NA	NA	NA	NA	NA
WP_172647889.1|5235156_5235795_-	hypothetical protein	NA	A0A1X9SH70	Bradyrhizobium_phage	63.9	2.0e-68
>prophage 7
NZ_AP013103	Bradyrhizobium elkanii USDA 61	9548186	5250501	5294704	9548186	tail,terminase,plate	Bradyrhizobium_phage(93.48%)	57	NA	NA
WP_172647898.1|5250501_5251035_+	hypothetical protein	NA	A0A1I9SA41	Rhodococcus_phage	33.7	3.3e-08
WP_028340273.1|5251406_5251700_+	hypothetical protein	NA	NA	NA	NA	NA
WP_028340272.1|5251696_5251945_+	hypothetical protein	NA	NA	NA	NA	NA
WP_028340271.1|5252075_5252411_+	hypothetical protein	NA	A0A0F6WBV5	Sinorhizobium_phage	49.5	8.6e-23
WP_155258443.1|5252407_5252563_+	hypothetical protein	NA	NA	NA	NA	NA
WP_028340270.1|5252603_5252786_+	hypothetical protein	NA	NA	NA	NA	NA
WP_035631370.1|5252939_5253194_+	hypothetical protein	NA	A0A1X9SGW3	Bradyrhizobium_phage	66.3	6.5e-23
WP_155258442.1|5253311_5253578_+	hypothetical protein	NA	NA	NA	NA	NA
WP_028340267.1|5253585_5254125_+	hypothetical protein	NA	A0A1X9SGW6	Bradyrhizobium_phage	76.0	1.7e-81
WP_155258441.1|5254121_5254277_+	hypothetical protein	NA	NA	NA	NA	NA
WP_028340266.1|5254371_5254578_+	hypothetical protein	NA	NA	NA	NA	NA
WP_051447831.1|5254604_5255111_+	hypothetical protein	NA	A0A1X9SH89	Bradyrhizobium_phage	39.2	6.2e-25
WP_028340265.1|5255107_5255461_+	hypothetical protein	NA	A0A1X9SH41	Bradyrhizobium_phage	75.2	7.6e-46
WP_028340264.1|5255463_5255727_+	hypothetical protein	NA	A0A1X9SH32	Bradyrhizobium_phage	64.0	5.9e-27
WP_051447830.1|5256968_5257400_+	hypothetical protein	NA	W5RV68	Staphylococcus_phage	54.7	3.6e-21
WP_051447829.1|5257998_5260056_+	collagen-like protein	NA	A0A1X9SGU3	Bradyrhizobium_phage	42.6	5.3e-46
WP_028340262.1|5260052_5260433_+	hypothetical protein	NA	NA	NA	NA	NA
WP_028340261.1|5260497_5260914_+	hypothetical protein	NA	A0A1X9SH12	Bradyrhizobium_phage	79.7	7.1e-59
WP_028340260.1|5260910_5261240_+	thiol reductase thioredoxin	NA	A0A1X9SH79	Bradyrhizobium_phage	47.7	7.6e-24
WP_028340259.1|5261239_5261452_+	hypothetical protein	NA	NA	NA	NA	NA
WP_035631366.1|5261467_5262010_+	hypothetical protein	NA	A0A1X9SH24	Bradyrhizobium_phage	74.5	3.8e-60
WP_051447828.1|5262016_5262574_+	AAA family ATPase	NA	A0A1X9SH05	Bradyrhizobium_phage	58.9	9.5e-51
WP_028340258.1|5262755_5263433_+	hypothetical protein	NA	A0A1X9SH03	Bradyrhizobium_phage	68.9	1.4e-83
WP_028340257.1|5263443_5263665_+	hypothetical protein	NA	A0A1X9SGU2	Bradyrhizobium_phage	72.6	4.6e-25
WP_155258449.1|5263998_5265450_+|terminase	phage terminase large subunit	terminase	A0A1X9SGU8	Bradyrhizobium_phage	85.5	3.2e-247
WP_172647899.1|5265470_5267069_+	DUF4055 domain-containing protein	NA	A0A1X9SGT3	Bradyrhizobium_phage	76.9	7.3e-237
WP_172647900.1|5267107_5267398_+	hypothetical protein	NA	A0A1X9SH04	Bradyrhizobium_phage	58.2	1.6e-20
WP_155258440.1|5267674_5267959_+	hypothetical protein	NA	A0A1X9SH27	Bradyrhizobium_phage	70.2	5.0e-32
WP_155258439.1|5268482_5269394_+	hypothetical protein	NA	A0A1X9SH84	Bradyrhizobium_phage	78.0	1.0e-118
WP_028340252.1|5269509_5270490_+	hypothetical protein	NA	A0A1X9SGZ7	Bradyrhizobium_phage	88.7	2.8e-162
WP_028340251.1|5270581_5270908_+	hypothetical protein	NA	A0A1X9SGT1	Bradyrhizobium_phage	73.7	1.1e-06
WP_028340250.1|5270923_5271343_+	DUF1320 domain-containing protein	NA	A0A1X9SGZ3	Bradyrhizobium_phage	83.8	3.8e-60
WP_028340249.1|5271363_5271813_+	phage virion morphogenesis protein	NA	A0A1X9SGU0	Bradyrhizobium_phage	47.9	1.5e-30
WP_028340248.1|5271812_5272397_+	hypothetical protein	NA	A0A1X9SGS5	Bradyrhizobium_phage	66.5	2.0e-59
WP_028340247.1|5272432_5273809_+	hypothetical protein	NA	A0A1X9SGZ1	Bradyrhizobium_phage	53.4	2.8e-43
WP_028340246.1|5273824_5274043_+	hypothetical protein	NA	NA	NA	NA	NA
WP_051447826.1|5274026_5274383_+	GPW/gp25 family protein	NA	A0A1X9SH13	Bradyrhizobium_phage	70.4	3.3e-41
WP_028340245.1|5274395_5275274_+|plate	baseplate J/gp47 family protein	plate	A0A1X9SH02	Bradyrhizobium_phage	70.5	7.1e-109
WP_155258448.1|5275299_5276493_+|tail	phage tail protein I	tail	A0A1X9SH73	Bradyrhizobium_phage	65.8	9.8e-154
WP_028340244.1|5276566_5278834_+	hypothetical protein	NA	A0A1X9SGY8	Bradyrhizobium_phage	74.3	0.0e+00
WP_028340243.1|5278846_5279038_+	hypothetical protein	NA	A0A1X9SGR9	Bradyrhizobium_phage	56.1	6.2e-10
WP_028340242.1|5279041_5280559_+	hypothetical protein	NA	A0A1X9SGY6	Bradyrhizobium_phage	55.6	9.2e-72
WP_035631362.1|5280565_5281141_+	hypothetical protein	NA	NA	NA	NA	NA
WP_051447824.1|5281215_5282652_+|tail	phage tail sheath subtilisin-like domain-containing protein	tail	A0A1X9SGY4	Bradyrhizobium_phage	83.3	8.0e-235
WP_028340241.1|5282744_5283275_+|tail	phage major tail tube protein	tail	A0A1X9SH49	Bradyrhizobium_phage	76.0	2.6e-74
WP_028340240.1|5283354_5283630_+|tail	phage tail assembly protein	tail	A0A1X9SH07	Bradyrhizobium_phage	71.8	1.9e-28
WP_028340239.1|5283832_5287180_+|tail	phage tail tape measure protein	tail	A0A1X9SGZ2	Bradyrhizobium_phage	39.6	6.4e-17
WP_028340238.1|5287237_5287774_+|tail	phage tail protein	tail	A0A1X9SH66	Bradyrhizobium_phage	67.1	4.7e-55
WP_080686714.1|5287770_5287995_+|tail	tail protein X	tail	A0A1X9SGX5	Bradyrhizobium_phage	67.1	7.2e-26
WP_028340236.1|5288091_5289204_+	hypothetical protein	NA	A0A1X9SGQ9	Bradyrhizobium_phage	52.2	1.6e-105
WP_172647901.1|5289218_5290385_+	DUF3380 domain-containing protein	NA	A0A1X9SGX6	Bradyrhizobium_phage	73.7	1.9e-162
WP_172647902.1|5290377_5290776_+	hypothetical protein	NA	A0A1X9SGS0	Bradyrhizobium_phage	38.2	4.2e-08
WP_172647903.1|5290795_5290981_+	hypothetical protein	NA	A0A1X9SGQ8	Bradyrhizobium_phage	77.5	6.0e-10
WP_028340233.1|5290980_5291310_+	hypothetical protein	NA	A0A1X9SGX4	Bradyrhizobium_phage	49.1	1.8e-20
WP_028340232.1|5291498_5293487_+	hypothetical protein	NA	A0A1X9SH39	Bradyrhizobium_phage	85.0	0.0e+00
WP_028340231.1|5293515_5293983_+	nucleoside 2-deoxyribosyltransferase	NA	A0A1X9SGZ5	Bradyrhizobium_phage	76.5	4.1e-63
WP_051447822.1|5294017_5294704_+	hypothetical protein	NA	A0A1X9SGY9	Bradyrhizobium_phage	82.3	1.6e-103
>prophage 8
NZ_AP013103	Bradyrhizobium elkanii USDA 61	9548186	5304902	5312698	9548186	integrase	Bradyrhizobium_phage(100.0%)	17	5293489:5293503	5312778:5312792
5293489:5293503	attL	CGTTTGCATGAATGC	NA	NA	NA	NA
WP_028340221.1|5304902_5305430_-	hypothetical protein	NA	A0A1X9SGQ2	Bradyrhizobium_phage	78.5	1.7e-41
WP_028340220.1|5305457_5305736_-	hypothetical protein	NA	A0A1X9SGN8	Bradyrhizobium_phage	73.3	5.4e-31
WP_051447820.1|5305732_5306350_-	hypothetical protein	NA	A0A1X9SGV5	Bradyrhizobium_phage	80.0	3.6e-99
WP_028340218.1|5306412_5306592_-	hypothetical protein	NA	NA	NA	NA	NA
WP_028340217.1|5306591_5306786_-	hypothetical protein	NA	NA	NA	NA	NA
WP_028340216.1|5306793_5306988_-	hypothetical protein	NA	NA	NA	NA	NA
WP_172647904.1|5306984_5307281_-	hypothetical protein	NA	A0A1X9SH19	Bradyrhizobium_phage	62.5	1.3e-30
WP_035631381.1|5307277_5307748_-	hypothetical protein	NA	A0A1X9SGX8	Bradyrhizobium_phage	56.3	3.6e-43
WP_028340214.1|5308180_5308492_+	hypothetical protein	NA	NA	NA	NA	NA
WP_028340213.1|5308500_5309103_+	DUF4118 domain-containing protein	NA	NA	NA	NA	NA
WP_172647905.1|5309065_5309725_-	DUF2493 domain-containing protein	NA	A0A1X9SGW8	Bradyrhizobium_phage	69.5	8.8e-88
WP_028340212.1|5309721_5310015_-	hypothetical protein	NA	NA	NA	NA	NA
WP_028340211.1|5310025_5310316_-	hypothetical protein	NA	NA	NA	NA	NA
WP_028340210.1|5310320_5310758_-	hypothetical protein	NA	A0A1X9SGN6	Bradyrhizobium_phage	55.1	2.8e-37
WP_028340209.1|5310786_5311044_-	hypothetical protein	NA	NA	NA	NA	NA
WP_028340208.1|5311043_5311298_-	hypothetical protein	NA	A0A1X9SGN9	Bradyrhizobium_phage	76.5	1.1e-30
WP_051447818.1|5311306_5312698_-|integrase	integrase arm-type DNA-binding domain-containing protein	integrase	A0A1X9SGU9	Bradyrhizobium_phage	44.3	1.6e-86
5312778:5312792	attR	GCATTCATGCAAACG	NA	NA	NA	NA
>prophage 9
NZ_AP013103	Bradyrhizobium elkanii USDA 61	9548186	5865443	5874984	9548186	tRNA	uncultured_Mediterranean_phage(100.0%)	11	NA	NA
WP_016846889.1|5865443_5866100_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	48.8	2.4e-29
WP_026192734.1|5866475_5866853_+	response regulator	NA	NA	NA	NA	NA
WP_018271530.1|5866972_5867740_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	36.6	1.8e-36
WP_172648023.1|5867819_5868725_-	hypothetical protein	NA	NA	NA	NA	NA
WP_018271528.1|5868825_5870157_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	54.5	2.3e-103
WP_018271527.1|5870358_5871156_-	twin-arginine translocase subunit TatC	NA	A0A1B1IVR7	uncultured_Mediterranean_phage	48.0	2.4e-55
WP_069278413.1|5871152_5871695_-	twin-arginine translocase subunit TatB	NA	NA	NA	NA	NA
WP_016846882.1|5871855_5872089_-	twin-arginine translocase TatA/TatE family subunit	NA	A0A1B1IVR9	uncultured_Mediterranean_phage	63.6	4.2e-08
WP_016846881.1|5872236_5873067_-	SMC-Scp complex subunit ScpB	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	49.7	2.2e-43
WP_016846880.1|5873143_5873965_-	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	34.8	1.6e-30
WP_172648024.1|5873961_5874984_-	beta-N-acetylhexosaminidase	NA	A0A1B1IVS3	uncultured_Mediterranean_phage	42.7	3.1e-23
>prophage 10
NZ_AP013103	Bradyrhizobium elkanii USDA 61	9548186	7245015	7256097	9548186		Escherichia_phage(42.86%)	9	NA	NA
WP_018270532.1|7245015_7248195_-	efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	22.7	8.4e-67
WP_018270531.1|7248576_7250268_-	MCP four helix bundle domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	31.0	2.3e-15
WP_018270530.1|7250437_7251727_-	four-carbon acid sugar kinase family protein	NA	A0A077SLJ7	Escherichia_phage	41.2	4.9e-74
WP_172648209.1|7251723_7252506_-	hydroxypyruvate isomerase family protein	NA	NA	NA	NA	NA
WP_172648210.1|7252518_7253430_-	NAD-binding protein	NA	A0A077SLF7	Escherichia_phage	48.8	2.2e-68
WP_016842859.1|7253626_7254283_+	aldolase	NA	A0A077SK32	Escherichia_phage	48.3	5.2e-48
WP_016842860.1|7254316_7254592_+	hypothetical protein	NA	NA	NA	NA	NA
WP_018270525.1|7254677_7255382_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	27.2	7.6e-13
WP_016842862.1|7255365_7256097_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.3	1.8e-12
>prophage 11
NZ_AP013103	Bradyrhizobium elkanii USDA 61	9548186	8169868	8231380	9548186	integrase,transposase	Bacillus_phage(28.57%)	49	8155313:8155327	8211325:8211339
8155313:8155327	attL	GCCGCATCGACCGCG	NA	NA	NA	NA
WP_129964853.1|8169868_8170981_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A2H4JAA2	uncultured_Caudovirales_phage	26.8	1.5e-07
WP_129964852.1|8170977_8171904_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_018269999.1|8171900_8172902_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A142F1N9	Bacillus_phage	26.3	7.8e-19
WP_080650314.1|8173046_8173169_+	hypothetical protein	NA	NA	NA	NA	NA
WP_028344409.1|8173198_8173783_+	YecA family protein	NA	NA	NA	NA	NA
WP_129964851.1|8174609_8174915_+	hypothetical protein	NA	NA	NA	NA	NA
WP_129964850.1|8175040_8175220_+	hypothetical protein	NA	NA	NA	NA	NA
WP_129964849.1|8175226_8175865_-	hypothetical protein	NA	NA	NA	NA	NA
WP_129964848.1|8175974_8176202_-	hypothetical protein	NA	NA	NA	NA	NA
WP_129964847.1|8176816_8177308_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_129964846.1|8177575_8178970_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_028343737.1|8179057_8179951_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_129964845.1|8181051_8182476_-	aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_162136692.1|8182531_8183257_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.9	2.7e-29
WP_018269988.1|8183354_8184050_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_018269987.1|8184046_8184838_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_080583579.1|8185047_8186208_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_026192335.1|8186415_8187213_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_018269984.1|8187827_8188685_+	DMT family transporter	NA	NA	NA	NA	NA
WP_018269983.1|8188765_8190022_-	serine hydroxymethyltransferase	NA	A0A219YCZ0	Aeromonas_phage	41.1	1.8e-68
WP_162136765.1|8190057_8191359_-	hypothetical protein	NA	NA	NA	NA	NA
WP_157183416.1|8191397_8192225_-	amino acid racemase	NA	NA	NA	NA	NA
WP_168858480.1|8192702_8194157_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_080586240.1|8194455_8196114_+	nodulation protein NodU	NA	Q58MH7	Prochlorococcus_phage	32.0	2.3e-23
WP_129964859.1|8196367_8196643_+	DUF2130 domain-containing protein	NA	NA	NA	NA	NA
WP_080586241.1|8196727_8197015_+	hypothetical protein	NA	NA	NA	NA	NA
WP_018269974.1|8197157_8199077_+	hypothetical protein	NA	NA	NA	NA	NA
WP_129964842.1|8199103_8202067_-	hypothetical protein	NA	NA	NA	NA	NA
WP_129964841.1|8202171_8202525_-	DUF3883 domain-containing protein	NA	NA	NA	NA	NA
WP_016846334.1|8203105_8203360_+	plasmid stabilization protein	NA	NA	NA	NA	NA
WP_016846333.1|8203356_8203779_+	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA	NA
WP_016846332.1|8204630_8204963_+	hypothetical protein	NA	NA	NA	NA	NA
WP_016846331.1|8204946_8207736_-	autotransporter domain-containing protein	NA	NA	NA	NA	NA
WP_157183415.1|8208636_8209023_-	hypothetical protein	NA	NA	NA	NA	NA
WP_016846328.1|8209272_8210580_+	MFS transporter	NA	Q6JIH2	Burkholderia_virus	32.8	7.0e-52
WP_125459168.1|8211799_8212060_+	hypothetical protein	NA	NA	NA	NA	NA
8211325:8211339	attR	GCCGCATCGACCGCG	NA	NA	NA	NA
WP_077231003.1|8212838_8213015_-	carotenoid biosynthesis protein	NA	NA	NA	NA	NA
WP_016846323.1|8213363_8214752_-	hypothetical protein	NA	NA	NA	NA	NA
WP_018269969.1|8215178_8215769_-	YecA family protein	NA	NA	NA	NA	NA
WP_157183414.1|8217705_8218035_+	hypothetical protein	NA	NA	NA	NA	NA
WP_050999495.1|8220110_8220416_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA	NA
WP_026192332.1|8220412_8220886_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_018269964.1|8221289_8222954_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	31.9	7.1e-25
WP_016846311.1|8223496_8224114_+	hypothetical protein	NA	NA	NA	NA	NA
WP_026192331.1|8224293_8224866_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_016842784.1|8224886_8225378_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_018269962.1|8225444_8226899_-	indoleacetamide hydrolase	NA	NA	NA	NA	NA
WP_172648473.1|8227311_8228862_+|transposase	IS21 family transposase	transposase	NA	NA	NA	NA
WP_011084703.1|8229868_8231380_+|transposase	ISNCY-like element ISBj12 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_AP013103	Bradyrhizobium elkanii USDA 61	9548186	9342120	9409136	9548186	integrase,transposase	Thermus_phage(16.67%)	59	9376028:9376044	9411813:9411829
WP_172646394.1|9342120_9343155_+|transposase	IS110 family transposase	transposase	A0A1S7J231	Thermus_phage	28.9	2.0e-14
WP_172648908.1|9343514_9346553_+	DNA polymerase I	NA	A0A142F1Q9	Bacillus_phage	31.4	3.4e-65
WP_026192149.1|9346783_9347419_+	LysE family translocator	NA	NA	NA	NA	NA
WP_016841252.1|9347535_9348162_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_018269561.1|9348412_9348976_+	orotate phosphoribosyltransferase	NA	E3SNS3	Prochlorococcus_phage	42.5	6.9e-25
WP_172648909.1|9349164_9349962_+	DUF2865 domain-containing protein	NA	NA	NA	NA	NA
WP_016843277.1|9349983_9350415_-	hypothetical protein	NA	NA	NA	NA	NA
WP_172648910.1|9350609_9350903_+	GIY-YIG nuclease family protein	NA	NA	NA	NA	NA
WP_069279146.1|9351156_9351390_-	hypothetical protein	NA	NA	NA	NA	NA
WP_172648911.1|9351659_9354203_+	glycogen/starch/alpha-glucan phosphorylase	NA	A0A140XAG6	Dickeya_phage	41.7	7.5e-10
WP_172648912.1|9354339_9355161_+	thioesterase family protein	NA	NA	NA	NA	NA
WP_069279148.1|9355305_9356283_+	arginase	NA	A0A0N9R043	Chrysochromulina_ericina_virus	35.7	1.6e-24
WP_172648913.1|9356603_9357638_-|transposase	IS110 family transposase	transposase	A0A1S7J231	Thermus_phage	28.9	2.7e-14
WP_172648914.1|9357940_9359557_-	phosphoenolpyruvate carboxykinase	NA	A0A2H4PQN1	Staphylococcus_phage	51.6	5.4e-147
WP_172648915.1|9359734_9360109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_172648916.1|9360485_9361220_-	HugZ family protein	NA	NA	NA	NA	NA
WP_016843287.1|9361462_9362164_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_172648917.1|9362274_9364083_+	sensor histidine kinase	NA	NA	NA	NA	NA
WP_172648918.1|9364079_9364520_+	serine kinase	NA	NA	NA	NA	NA
WP_021076632.1|9364734_9365136_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_016843291.1|9365132_9365459_+	HPr family phosphocarrier protein	NA	NA	NA	NA	NA
WP_172648919.1|9365660_9367274_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_057019506.1|9367835_9369647_+	elongation factor 4	NA	NA	NA	NA	NA
WP_172648920.1|9369747_9370080_+	hypothetical protein	NA	NA	NA	NA	NA
WP_172648921.1|9370333_9371560_+	MFS transporter	NA	NA	NA	NA	NA
WP_172648922.1|9371696_9372869_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_016843298.1|9372972_9373335_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_016843299.1|9373527_9373692_-	hypothetical protein	NA	NA	NA	NA	NA
WP_016843300.1|9374001_9374304_+	hypothetical protein	NA	NA	NA	NA	NA
WP_026192146.1|9374574_9374886_+	c-type cytochrome	NA	NA	NA	NA	NA
WP_172648923.1|9375204_9377172_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	67.9	2.4e-08
9376028:9376044	attL	CCGCCGCCGCGAGCGCG	NA	NA	NA	NA
WP_172648924.1|9377390_9378302_-	sterol desaturase family protein	NA	NA	NA	NA	NA
WP_172648925.1|9378407_9379013_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_172648926.1|9379024_9379807_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_172648927.1|9379839_9380295_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_172648928.1|9380588_9382802_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_016843321.1|9383155_9383536_-	L,D-transpeptidase	NA	NA	NA	NA	NA
WP_172648929.1|9383788_9384751_+	penicillin-insensitive murein endopeptidase	NA	NA	NA	NA	NA
WP_069279162.1|9384880_9385390_+	hypothetical protein	NA	NA	NA	NA	NA
WP_172648930.1|9385580_9386381_+	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_172648931.1|9386544_9387240_+	molybdate ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_018269544.1|9387343_9388015_+	molybdenum ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	29.6	5.2e-19
WP_172648932.1|9388108_9389335_+	hypothetical protein	NA	NA	NA	NA	NA
WP_172648933.1|9389401_9391195_-	potassium/proton antiporter	NA	NA	NA	NA	NA
WP_172648934.1|9391414_9392731_+	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_016844429.1|9392898_9393723_+	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
WP_018269541.1|9393811_9394531_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_026192143.1|9394668_9395280_+	DNA repair protein RadC	NA	NA	NA	NA	NA
WP_011090895.1|9395437_9396679_+|integrase	site-specific integrase	integrase	A0A248SL35	Klebsiella_phage	66.8	1.9e-160
WP_014498593.1|9396675_9398019_+	DUF1016 family protein	NA	Q9JMP5	Wolbachia_phage	55.5	6.2e-112
WP_011090897.1|9398020_9399274_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011090898.1|9399364_9401854_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_014498594.1|9401850_9402075_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014498595.1|9402164_9402941_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_014498596.1|9403127_9403682_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014498597.1|9403800_9405588_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_011085265.1|9405628_9406738_+|transposase	IS630-like element ISBj5 family transposase	transposase	NA	NA	NA	NA
WP_014498598.1|9406748_9407513_-|transposase	IS5 family transposase	transposase	A0A0N9SHJ4	Paenibacillus_phage	49.0	4.7e-24
WP_011088795.1|9408071_9409136_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
9411813:9411829	attR	CGCGCTCGCGGCGGCGG	NA	NA	NA	NA
>prophage 13
NZ_AP013103	Bradyrhizobium elkanii USDA 61	9548186	9417753	9481332	9548186	protease,transposase,head	Vibrio_virus(12.5%)	49	NA	NA
WP_014498606.1|9417753_9418083_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_014498607.1|9418102_9418987_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014498608.1|9419453_9420119_+	type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein	NA	NA	NA	NA	NA
WP_016846553.1|9421233_9422307_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011090914.1|9424781_9426113_-	group II intron reverse transcriptase/maturase	NA	NA	NA	NA	NA
WP_011090915.1|9426045_9426882_-	porin family protein	NA	NA	NA	NA	NA
WP_011090916.1|9427325_9427994_+	AAA family ATPase	NA	A2I303	Vibrio_virus	32.7	1.5e-10
WP_011090917.1|9427956_9428994_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011090918.1|9428998_9429862_-	ATP-binding protein	NA	A0A059NT77	Lactococcus_phage	37.2	8.1e-33
WP_011090919.1|9429861_9431361_-|transposase	IS21 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	28.8	7.8e-15
WP_011084668.1|9431660_9432203_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014498652.1|9433172_9433439_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011090921.1|9433674_9434079_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011090930.1|9437756_9438890_-	FAD-dependent oxidoreductase	NA	A0A2K9L3K5	Tupanvirus	24.4	3.1e-08
WP_129964890.1|9440897_9441143_-	hypothetical protein	NA	NA	NA	NA	NA
WP_016842032.1|9441293_9441455_-	hypothetical protein	NA	NA	NA	NA	NA
WP_172648935.1|9442208_9443759_+|transposase	IS21 family transposase	transposase	NA	NA	NA	NA
WP_080586187.1|9443719_9444565_+	ATP-binding protein	NA	U5N3V8	Enterobacteria_phage	35.0	2.9e-35
WP_011090937.1|9445852_9446614_+	ATP-binding protein	NA	K4HZD4	Acidithiobacillus_phage	53.1	1.3e-66
WP_162130962.1|9447654_9447981_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011090941.1|9448292_9448643_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011090946.1|9450126_9451173_-	ATP-grasp domain-containing protein	NA	NA	NA	NA	NA
WP_014498636.1|9451163_9452027_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011090948.1|9452023_9453775_-	gamma-glutamyltranspeptidase	NA	NA	NA	NA	NA
WP_086023025.1|9457490_9458619_+|transposase	IS3-like element ISRj2 family transposase	transposase	U5P429	Shigella_phage	33.7	2.0e-18
WP_011090953.1|9459023_9459380_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA	NA
WP_011090954.1|9459376_9459775_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA	NA
WP_011084509.1|9459931_9460276_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014497999.1|9460800_9461022_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084508.1|9461591_9461849_+	WGR domain-containing protein	NA	NA	NA	NA	NA
WP_011090955.1|9462583_9466909_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011090956.1|9467880_9468123_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_011090957.1|9468228_9468471_+	AlpA family phage regulatory protein	NA	NA	NA	NA	NA
WP_016846398.1|9468467_9468707_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014498627.1|9468710_9468953_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014498629.1|9473737_9473995_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011090956.1|9474062_9474305_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_011090957.1|9474410_9474653_+	AlpA family phage regulatory protein	NA	NA	NA	NA	NA
WP_016846398.1|9474649_9474889_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014498627.1|9474892_9475135_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011090958.1|9476039_9476324_+	DUF3892 domain-containing protein	NA	NA	NA	NA	NA
WP_154694125.1|9477195_9477420_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014498624.1|9477971_9478202_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011090960.1|9478587_9478791_-	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	49.2	1.1e-09
WP_011090961.1|9478807_9480214_-	hypothetical protein	NA	NA	NA	NA	NA
WP_071916953.1|9480191_9480371_+	DUF3892 domain-containing protein	NA	NA	NA	NA	NA
WP_011090962.1|9480374_9480827_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011090963.1|9480841_9481057_-|head,protease	HK97 family phage prohead protease	head,protease	NA	NA	NA	NA
WP_011090964.1|9481053_9481332_-|head,protease	HK97 family phage prohead protease	head,protease	NA	NA	NA	NA
>prophage 1
NZ_AP013104	Bradyrhizobium elkanii USDA 61 plasmid pBel61, complete sequence	101809	5779	77037	101809	transposase	Mycobacterium_phage(20.0%)	55	NA	NA
WP_172649301.1|5779_7131_-|transposase	IS3 family transposase	transposase	Q6J1X2	Lactobacillus_phage	27.1	7.3e-12
WP_172649302.1|8824_9136_+	DUF736 domain-containing protein	NA	NA	NA	NA	NA
WP_172649303.1|9197_9374_+	hypothetical protein	NA	NA	NA	NA	NA
WP_172649304.1|9346_9619_-	WGR domain-containing protein	NA	NA	NA	NA	NA
WP_172649305.1|9835_10249_+	DNA-binding protein	NA	Q1MVE8	Enterobacteria_phage	57.0	6.0e-34
WP_172649306.1|10429_10792_-	type IV secretory system conjugative DNA transfer family protein	NA	NA	NA	NA	NA
WP_172649351.1|11243_12008_+	ParA family protein	NA	F0PIG8	Enterococcus_phage	23.9	1.5e-06
WP_172649307.1|11997_12981_+	ParB/RepB/Spo0J family partition protein	NA	NA	NA	NA	NA
WP_172649308.1|13399_13918_+	plasmid mobilization relaxosome protein MobC	NA	NA	NA	NA	NA
WP_172649309.1|13914_14988_+	relaxase/mobilization nuclease domain-containing protein	NA	NA	NA	NA	NA
WP_172649310.1|15555_17652_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_172649311.1|18112_18373_-	hypothetical protein	NA	NA	NA	NA	NA
WP_172649312.1|18576_19053_+	hypothetical protein	NA	NA	NA	NA	NA
WP_172649313.1|19049_22157_+	N-6 DNA methylase	NA	NA	NA	NA	NA
WP_172649314.1|22153_22822_+	hypothetical protein	NA	NA	NA	NA	NA
WP_172649315.1|23132_27263_+	Eco57I restriction-modification methylase domain-containing protein	NA	A0A1B1IUC6	uncultured_Mediterranean_phage	24.5	8.4e-19
WP_172649316.1|27307_28555_+	hypothetical protein	NA	NA	NA	NA	NA
WP_172649317.1|28813_31963_-	hypothetical protein	NA	NA	NA	NA	NA
WP_172649318.1|31959_33735_-	hypothetical protein	NA	NA	NA	NA	NA
WP_172649319.1|33734_35003_-	hypothetical protein	NA	NA	NA	NA	NA
WP_172649320.1|35667_36393_-	SOS response-associated peptidase family protein	NA	A0A291AUP1	Sinorhizobium_phage	36.9	9.5e-35
WP_172649321.1|36403_36847_-	hypothetical protein	NA	NA	NA	NA	NA
WP_172649322.1|36892_37270_-	hypothetical protein	NA	NA	NA	NA	NA
WP_172649323.1|37415_38348_+	Ku protein	NA	NA	NA	NA	NA
WP_172649324.1|38412_38916_+	NUDIX domain-containing protein	NA	NA	NA	NA	NA
WP_172649325.1|38912_39377_+	metallophosphoesterase family protein	NA	NA	NA	NA	NA
WP_172649326.1|39461_40325_-	DNA ligase	NA	A0A2H4JD86	uncultured_Caudovirales_phage	28.9	3.7e-25
WP_172649327.1|40466_41084_+	cell envelope biogenesis protein TolA	NA	NA	NA	NA	NA
WP_071916635.1|41299_41752_+	Hsp20 family protein	NA	A0A1B1IW69	uncultured_Mediterranean_phage	43.5	2.6e-30
WP_172649328.1|41829_42153_+	hypothetical protein	NA	NA	NA	NA	NA
WP_172649329.1|42165_42339_+	hypothetical protein	NA	NA	NA	NA	NA
WP_172649330.1|42750_43826_-|transposase	IS3 family transposase	transposase	A0A2P1JR32	Mycobacterium_phage	34.2	5.1e-16
WP_172649295.1|43773_44004_-	hypothetical protein	NA	NA	NA	NA	NA
WP_172649331.1|44003_44924_-	DNA ligase	NA	A0A068CDF3	Rhizobium_phage	40.5	4.9e-60
WP_172649332.1|45028_45217_+	DUF3606 domain-containing protein	NA	NA	NA	NA	NA
WP_172649333.1|45991_47398_+	DUF2130 domain-containing protein	NA	NA	NA	NA	NA
WP_172649334.1|47442_48438_+	hypothetical protein	NA	NA	NA	NA	NA
WP_172649335.1|49401_50697_+|transposase	ISNCY family transposase	transposase	NA	NA	NA	NA
WP_125459191.1|52131_52368_-	hypothetical protein	NA	NA	NA	NA	NA
WP_172649301.1|54992_56344_-|transposase	IS3 family transposase	transposase	Q6J1X2	Lactobacillus_phage	27.1	7.3e-12
WP_028344440.1|56917_57307_+	hypothetical protein	NA	NA	NA	NA	NA
WP_155258819.1|57329_57659_+	hypothetical protein	NA	NA	NA	NA	NA
WP_035633660.1|59141_59633_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_016847835.1|59918_60125_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	54.0	1.9e-12
WP_051448161.1|60699_62724_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080686989.1|63042_63408_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_028344390.1|64747_65062_-|transposase	IS3 family transposase	transposase	NA	NA	NA	NA
WP_028344391.1|65564_66698_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_155258804.1|68060_68393_-	hypothetical protein	NA	NA	NA	NA	NA
WP_028344392.1|68562_69528_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_172649336.1|69655_71074_+	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_172649337.1|71070_73017_+	glycosyltransferase	NA	M1I277	Paramecium_bursaria_Chlorella_virus	30.2	1.8e-27
WP_172649338.1|74237_74771_-|transposase	transposase	transposase	A0A2P1JQX9	Mycobacterium_phage	43.6	8.3e-28
WP_080686992.1|74951_75290_-	hypothetical protein	NA	A0A2P1JQX9	Mycobacterium_phage	42.0	3.3e-06
WP_028344400.1|76011_77037_+|transposase	IS110 family transposase	transposase	M1NSC9	Streptococcus_phage	28.7	1.3e-05
