The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP051643	Staphylococcus caprae strain SY333 chromosome, complete genome	2577038	95884	109104	2577038	terminase,integrase	uncultured_Caudovirales_phage(77.78%)	21	97841:97858	114885:114902
WP_044466866.1|95884_96169_+	co-chaperone GroES	NA	A0A221S4A5	uncultured_virus	36.2	8.9e-13
WP_002445341.1|96238_97858_+	chaperonin GroEL	NA	A0A240F779	uncultured_virus	54.4	7.6e-157
97841:97858	attL	ATGCCAGGTATGATGTAA	NA	NA	NA	NA
WP_049402091.1|97972_99148_-|integrase	site-specific integrase	integrase	A0A2H4JBC4	uncultured_Caudovirales_phage	95.4	1.9e-213
WP_049402092.1|99163_99835_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_049402093.1|99987_100203_+	helix-turn-helix transcriptional regulator	NA	A0A2H4JB11	uncultured_Caudovirales_phage	56.4	2.9e-08
WP_049402094.1|100206_100521_+	helix-turn-helix domain-containing protein	NA	A0A2H4JHK0	uncultured_Caudovirales_phage	96.2	3.8e-49
WP_002476297.1|100533_100734_+	hypothetical protein	NA	A0A2H4JD47	uncultured_Caudovirales_phage	100.0	1.9e-30
WP_049402095.1|100737_101142_+	hypothetical protein	NA	A0A2H4JBF1	uncultured_Caudovirales_phage	95.5	2.9e-65
WP_002467971.1|101146_101353_+	hypothetical protein	NA	A0A2H4JHP9	uncultured_Caudovirales_phage	98.5	4.9e-29
WP_049402096.1|101365_101701_+	hypothetical protein	NA	A0A2H4JBC6	uncultured_Caudovirales_phage	94.9	2.7e-32
WP_049402097.1|101745_102648_+	primase C-terminal domain-containing protein	NA	A0A1W6JQL5	Staphylococcus_phage	43.2	1.9e-64
WP_049402098.1|102660_104373_+	DUF927 domain-containing protein	NA	Q4ZE73	Staphylococcus_phage	87.7	2.1e-290
WP_049402099.1|104683_105205_+	hypothetical protein	NA	NA	NA	NA	NA
WP_145376024.1|105265_105850_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002476284.1|106217_106550_+	hypothetical protein	NA	A0A2H4JHK4	uncultured_Caudovirales_phage	99.1	4.2e-54
WP_049401971.1|106631_107219_+	pathogenicity island protein	NA	A0A2H4JBG0	uncultured_Caudovirales_phage	76.5	4.5e-75
WP_145376021.1|107218_107431_+	hypothetical protein	NA	A0A2H4JHW4	uncultured_Caudovirales_phage	60.9	1.7e-13
WP_145376019.1|107482_107920_+	pathogenicity island protein	NA	A0A2H4JBD6	uncultured_Caudovirales_phage	96.6	1.0e-71
WP_049401931.1|107916_108255_+	transcriptional regulator	NA	A0A2H4JEH8	uncultured_Caudovirales_phage	92.0	6.4e-50
WP_044466850.1|108256_108829_+|terminase	terminase small subunit	terminase	A0A2H4JBF3	uncultured_Caudovirales_phage	91.6	2.6e-96
WP_044466893.1|108834_109104_+	hypothetical protein	NA	A0A2H4JBE4	uncultured_Caudovirales_phage	92.1	1.6e-40
114885:114902	attR	ATGCCAGGTATGATGTAA	NA	NA	NA	NA
>prophage 2
NZ_CP051643	Staphylococcus caprae strain SY333 chromosome, complete genome	2577038	238215	279238	2577038	tRNA	Staphylococcus_phage(96.3%)	32	NA	NA
WP_002443518.1|238215_239625_+	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	63.0	7.7e-174
WP_002443516.1|239614_240616_+	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	53.3	3.1e-100
WP_037541567.1|240612_240861_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	88.0	2.0e-37
WP_037541521.1|240932_241406_+	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	57.1	1.6e-46
WP_002443510.1|241386_242169_+	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	74.1	4.5e-107
WP_002443508.1|242247_243840_-	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	88.3	1.8e-280
WP_044466753.1|244215_245412_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	87.2	7.2e-197
WP_002443505.1|245518_246427_+	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	80.9	2.4e-107
WP_002443503.1|246582_247419_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	71.1	4.5e-113
WP_080981423.1|247695_248052_-	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	35.0	1.3e-08
WP_002443500.1|248045_248411_-	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	66.1	9.3e-39
WP_044466752.1|248508_248817_-	hypothetical protein	NA	NA	NA	NA	NA
WP_037541519.1|249110_249824_+	transaldolase	NA	H8ZNI7	Synechococcus_phage	38.2	6.5e-20
WP_044466751.1|249982_250426_+	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	51.0	8.7e-23
WP_002443492.1|250412_250856_-	competence protein ComK	NA	NA	NA	NA	NA
WP_002443491.1|250869_251346_-	sigma-70 family RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	46.8	2.2e-32
WP_002443489.1|251554_251773_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002443487.1|252087_252939_+	glucosaminidase domain-containing protein	NA	A0A1W6JNR1	Staphylococcus_phage	46.4	4.9e-30
WP_002443485.1|253256_254747_+	FAD/NAD(P)-binding protein	NA	A0A2H4PQX2	Staphylococcus_phage	91.1	4.7e-20
WP_002443483.1|255171_256215_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	65.9	5.8e-134
WP_002443481.1|256221_256854_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	79.5	1.5e-89
WP_002443479.1|256865_258047_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	77.9	3.9e-179
WP_002443477.1|258090_258549_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	84.9	1.9e-60
WP_002443476.1|258621_259623_-	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	73.9	2.0e-139
WP_170080836.1|259870_260698_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_037541517.1|261261_261663_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_044466750.1|261736_262300_-	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	62.2	2.3e-60
WP_002443468.1|262296_263256_-	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	85.4	4.3e-67
WP_044466749.1|263362_264583_+	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	83.5	3.9e-182
WP_044466748.1|264879_267294_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	88.8	0.0e+00
WP_002443464.1|267317_267629_+	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	68.9	3.5e-34
WP_170080837.1|268132_279238_+	DUF1542 domain-containing protein	NA	A0A2H4PQU6	Staphylococcus_phage	31.9	9.1e-52
>prophage 3
NZ_CP051643	Staphylococcus caprae strain SY333 chromosome, complete genome	2577038	396987	406128	2577038	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_037541493.1|396987_397992_+	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
WP_170080841.1|397993_399019_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_002443262.1|399039_400179_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	45.0	1.1e-85
WP_002443260.1|400194_400458_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	42.6	9.8e-06
WP_002443258.1|400889_403181_+	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	34.8	1.7e-32
WP_037541491.1|403317_405591_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.8e-63
WP_002443255.1|405609_406128_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	45.5	1.1e-29
>prophage 4
NZ_CP051643	Staphylococcus caprae strain SY333 chromosome, complete genome	2577038	534527	544363	2577038		Bacillus_phage(42.86%)	11	NA	NA
WP_002443002.1|534527_535415_+	site-specific tyrosine recombinase XerD	NA	A0A0K2CP59	Brevibacillus_phage	32.1	2.7e-39
WP_037541466.1|535467_536001_-	DUF309 domain-containing protein	NA	NA	NA	NA	NA
WP_037541465.1|536098_536830_+	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	27.8	7.9e-05
WP_002442997.1|536822_537365_+	SMC-Scp complex subunit ScpB	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	33.8	1.2e-10
WP_002442995.1|537357_538095_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_002442993.1|538230_538956_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	40.9	4.6e-45
WP_002442991.1|538939_540703_+	HAMP domain-containing protein	NA	W8CYF6	Bacillus_phage	32.4	4.4e-33
WP_037541463.1|540975_541515_+	ECF transporter S component	NA	NA	NA	NA	NA
WP_002433578.1|541677_541926_-	ferredoxin	NA	A0A127AYY7	Bacillus_phage	50.7	2.0e-16
WP_037541461.1|542034_542997_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_002442984.1|542983_544363_+	ATP-dependent DNA helicase RecQ	NA	M1PGQ0	Moumouvirus	33.7	8.1e-59
>prophage 5
NZ_CP051643	Staphylococcus caprae strain SY333 chromosome, complete genome	2577038	862781	955475	2577038	plate,holin,capsid,head,terminase,integrase,tail,tRNA,portal	Staphylococcus_phage(79.45%)	116	893432:893449	954237:954254
WP_002442483.1|862781_863714_-|tRNA	methionyl-tRNA formyltransferase	tRNA	M4QRX9	Synechococcus_phage	31.1	3.6e-10
WP_002442482.1|863706_864195_-	peptide deformylase	NA	NA	NA	NA	NA
WP_002442481.1|864412_864616_+	TM2 domain-containing protein	NA	NA	NA	NA	NA
WP_052497322.1|864681_865752_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002442477.1|865962_868371_-	primosomal protein N'	NA	NA	NA	NA	NA
WP_037541383.1|868370_869570_-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	31.8	7.1e-43
WP_002442473.1|869794_870007_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_002442471.1|870006_870630_-	guanylate kinase	NA	A0A143DIC6	Abalone_herpesvirus	34.7	2.1e-22
WP_002442469.1|870992_872690_+	fibronectin-binding domain-containing protein	NA	NA	NA	NA	NA
WP_002442468.1|872751_873153_-	VOC family protein	NA	NA	NA	NA	NA
WP_044466288.1|873703_873928_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002442463.1|873956_874568_-	orotate phosphoribosyltransferase	NA	S4W4D9	Pandoravirus	36.4	1.3e-24
WP_002442461.1|874568_875261_-	orotidine-5'-phosphate decarboxylase	NA	NA	NA	NA	NA
WP_044466289.1|875295_878469_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_002442458.1|878461_879562_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	36.6	3.3e-63
WP_002442456.1|879562_880840_-	dihydroorotase	NA	NA	NA	NA	NA
WP_002442454.1|880858_881740_-	aspartate carbamoyltransferase catalytic subunit	NA	A0A1J0F9B8	Only_Syngen_Nebraska_virus	31.9	1.5e-29
WP_002442452.1|881766_883074_-	uracil transporter	NA	Q9KX94	Enterobacteria_phage	35.2	3.9e-55
WP_002442450.1|883306_883834_-	bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR	NA	NA	NA	NA	NA
WP_002442448.1|884309_885227_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_002442446.1|885239_885716_-	signal peptidase II	NA	NA	NA	NA	NA
WP_002442444.1|885891_886689_-	VOC family protein	NA	NA	NA	NA	NA
WP_044466290.1|887012_887372_-	DUF3139 domain-containing protein	NA	NA	NA	NA	NA
WP_002442438.1|887684_890435_-|tRNA	isoleucine--tRNA ligase	tRNA	A0A2I2L3Y0	Orpheovirus	26.4	1.8e-86
WP_037541381.1|890777_891431_-	DivIVA domain-containing protein	NA	NA	NA	NA	NA
WP_170080915.1|891459_892230_-	RNA-binding protein	NA	NA	NA	NA	NA
WP_002442431.1|892387_892678_-	YggT family protein	NA	NA	NA	NA	NA
WP_002442429.1|892689_893298_-	cell division protein SepF	NA	NA	NA	NA	NA
WP_002442427.1|893294_893969_-	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
893432:893449	attL	CTTCTTTTTTATGTCTTA	NA	NA	NA	NA
WP_037541550.1|893986_894778_-	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_002442422.1|895052_896237_-	cell division protein FtsZ	NA	NA	NA	NA	NA
WP_002442420.1|896269_897670_-	cell division protein FtsA	NA	NA	NA	NA	NA
WP_044466292.1|897773_899189_-	FtsQ-type POTRA domain-containing protein	NA	NA	NA	NA	NA
WP_002442417.1|899204_900554_-	UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase	NA	NA	NA	NA	NA
WP_044466293.1|900555_901521_-	phospho-N-acetylmuramoyl-pentapeptide- transferase	NA	NA	NA	NA	NA
WP_002442413.1|901702_904039_-	penicillin-binding protein	NA	NA	NA	NA	NA
WP_049402012.1|904019_904421_-	cell division protein FtsL	NA	NA	NA	NA	NA
WP_037541375.1|904433_905369_-	16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH	NA	NA	NA	NA	NA
WP_002442408.1|905383_905815_-	division/cell wall cluster transcriptional repressor MraZ	NA	NA	NA	NA	NA
WP_002442407.1|905958_907572_-	bacillithiol biosynthesis cysteine-adding enzyme BshC	NA	NA	NA	NA	NA
WP_002442405.1|907760_908201_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_002442403.1|908435_909122_-	noncanonical pyrimidine nucleotidase, YjjG family	NA	NA	NA	NA	NA
WP_002442402.1|909240_909375_-	beta-class phenol-soluble modulin	NA	NA	NA	NA	NA
WP_002442400.1|909423_909558_-	beta-class phenol-soluble modulin	NA	NA	NA	NA	NA
WP_170080847.1|909611_909746_-	beta-class phenol-soluble modulin	NA	NA	NA	NA	NA
WP_002442394.1|909783_909918_-	beta-class phenol-soluble modulin	NA	NA	NA	NA	NA
WP_002442393.1|910675_911848_+	MFS transporter	NA	NA	NA	NA	NA
WP_170080848.1|912046_913504_-	CHAP domain-containing protein	NA	A0A0N6WMR3	Staphylococcus_phage	75.1	1.0e-216
WP_126493787.1|913513_913813_-|holin	phage holin	holin	Q4ZCR8	Staphylococcus_virus	68.0	8.8e-27
WP_126493788.1|913858_914005_-	XkdX family protein	NA	A0A2H4J8V3	uncultured_Caudovirales_phage	79.2	5.8e-16
WP_126493789.1|913997_914378_-	hypothetical protein	NA	NA	NA	NA	NA
WP_126493790.1|914392_916018_-|plate	BppU family phage baseplate upper protein	plate	A0A1W6JNS7	Staphylococcus_phage	95.2	4.9e-87
WP_126493791.1|916072_917977_-	glucosaminidase domain-containing protein	NA	A0A1W6JNR1	Staphylococcus_phage	99.5	1.2e-307
WP_126493792.1|918027_918414_-	hypothetical protein	NA	A0A1W6JNR6	Staphylococcus_phage	98.4	4.4e-63
WP_070872838.1|918397_918817_-	hypothetical protein	NA	A0A1W6JNR2	Staphylococcus_phage	100.0	4.2e-75
WP_126493793.1|918832_919993_-|plate	BppU family phage baseplate upper protein	plate	A0A1W6JNR8	Staphylococcus_phage	99.2	1.7e-214
WP_126493794.1|920006_921884_-	DUF2817 domain-containing protein	NA	A0A1W6JNS8	Staphylococcus_phage	99.2	0.0e+00
WP_126493795.1|921884_923144_-|tail	phage tail protein	tail	A0A1W6JNY1	Staphylococcus_phage	99.8	3.6e-239
WP_070872845.1|923154_924114_-|tail	phage tail family protein	tail	A0A1W6JNU3	Staphylococcus_phage	99.4	5.1e-185
WP_126493796.1|924125_928001_-|tail	phage tail protein	tail	A0A1W6JNU6	Staphylococcus_phage	95.7	1.5e-219
WP_126493797.1|928015_928360_-	hypothetical protein	NA	A0A1W6JNR9	Staphylococcus_phage	99.1	5.0e-58
WP_095323405.1|928404_928764_-|tail	phage tail protein	tail	A0A1W6JNQ1	Staphylococcus_phage	100.0	1.9e-60
WP_095323406.1|928824_929379_-|tail	phage major tail protein, TP901-1 family	tail	A0A1W6JNU0	Staphylococcus_phage	100.0	1.4e-94
WP_126493798.1|929424_929814_-	hypothetical protein	NA	A0A1W6JNQ3	Staphylococcus_phage	100.0	1.3e-67
WP_126493799.1|929824_930175_-	HK97 gp10 family phage protein	NA	A0A1W6JNQ6	Staphylococcus_phage	100.0	1.3e-58
WP_126493800.1|930176_930479_-	hypothetical protein	NA	A0A1W6JNQ9	Staphylococcus_phage	100.0	1.4e-51
WP_126493801.1|930475_930805_-|head,tail	phage head-tail connector protein	head,tail	A0A1W6JNR3	Staphylococcus_phage	100.0	2.1e-53
WP_126493802.1|930806_931076_-	hypothetical protein	NA	A0A1W6JNX0	Staphylococcus_phage	100.0	3.9e-42
WP_126493803.1|931097_932024_-|capsid	phage major capsid protein	capsid	A0A1W6JNT3	Staphylococcus_phage	100.0	5.1e-174
WP_126493804.1|932041_932656_-	DUF4355 domain-containing protein	NA	A0A1W6JNT6	Staphylococcus_phage	100.0	3.2e-39
WP_170080849.1|932903_933056_-	hypothetical protein	NA	A0A1W6JNR0	Staphylococcus_phage	100.0	8.9e-20
WP_170080850.1|933042_933201_-	hypothetical protein	NA	A0A1W6JNP6	Staphylococcus_phage	100.0	7.6e-22
WP_126493805.1|933200_934151_-|capsid	minor capsid protein	capsid	A0A1W6JNS6	Staphylococcus_phage	100.0	7.6e-165
WP_170080851.1|934157_935693_-|portal	phage portal protein	portal	A0A1W6JNP8	Staphylococcus_phage	100.0	5.3e-293
WP_126493807.1|935704_936988_-|terminase	PBSX family phage terminase large subunit	terminase	A0A1W6JNP5	Staphylococcus_phage	99.8	4.3e-256
WP_126493808.1|936990_937377_-	DNA-binding protein	NA	A0A1W6JNP4	Staphylococcus_phage	100.0	7.3e-66
WP_126493809.1|937413_937614_-	hypothetical protein	NA	A0A1W6JNQ8	Staphylococcus_phage	100.0	2.6e-27
WP_126493810.1|937833_938250_-	transcriptional regulator	NA	A0A1W6JNV8	Staphylococcus_phage	100.0	6.4e-76
WP_126493811.1|938320_938491_-	regulator	NA	A0A1W6JNS3	Staphylococcus_phage	100.0	2.1e-25
WP_126493812.1|938496_938637_-	DUF1381 domain-containing protein	NA	A0A1W6JNS9	Staphylococcus_phage	97.8	1.2e-15
WP_002442331.1|938673_939099_-	dUTP diphosphatase	NA	A0A1W6JNN6	Staphylococcus_phage	99.3	5.2e-73
WP_153227380.1|939098_939269_-	hypothetical protein	NA	A0A1W6JNR7	Staphylococcus_phage	100.0	6.3e-22
WP_126493813.1|939312_939405_-	DUF1024 family protein	NA	NA	NA	NA	NA
WP_002442327.1|939406_939583_-	hypothetical protein	NA	A0A1W6JNN8	Staphylococcus_phage	100.0	1.2e-28
WP_126493814.1|939569_939839_-	hypothetical protein	NA	A0A1W6JNN9	Staphylococcus_phage	100.0	6.6e-42
WP_002469958.1|940285_940444_-	hypothetical protein	NA	A0A1W6JNP9	Staphylococcus_phage	100.0	6.4e-21
WP_126493815.1|940446_940644_-	hypothetical protein	NA	A0A1W6JNU5	Staphylococcus_phage	100.0	7.8e-32
WP_126493816.1|940745_940940_-	hypothetical protein	NA	A0A1W6JNR4	Staphylococcus_phage	96.9	7.4e-27
WP_002442307.1|940932_941340_-	DUF1064 domain-containing protein	NA	A0A1W6JNS0	Staphylococcus_phage	96.3	1.6e-71
WP_126493817.1|941348_941594_-	hypothetical protein	NA	A0A1W6JNN7	Staphylococcus_phage	96.3	2.5e-40
WP_168995397.1|941596_941752_-	hypothetical protein	NA	A0A1W6JNM0	Staphylococcus_phage	94.1	4.5e-19
WP_126493818.1|941745_942516_-	ATP-binding protein	NA	A0A1W6JNQ7	Staphylococcus_phage	96.5	5.2e-140
WP_126493819.1|942526_943291_-	conserved phage C-terminal domain-containing protein	NA	W5R8N2	Staphylococcus_phage	78.9	7.8e-88
WP_126493820.1|943277_943958_-	hypothetical protein	NA	A0A1W6JNM5	Staphylococcus_phage	94.1	4.8e-121
WP_126493821.1|943958_944510_-	HNH endonuclease	NA	A0A1W6JNP0	Staphylococcus_phage	100.0	1.3e-103
WP_126493822.1|944522_944942_-	single-stranded DNA-binding protein	NA	A0A1W6JNT4	Staphylococcus_phage	100.0	3.7e-63
WP_126493823.1|944938_945586_-	ERF family protein	NA	A0A1W6JNQ5	Staphylococcus_phage	97.2	7.8e-113
WP_095323496.1|945578_945800_-	DUF2483 family protein	NA	A0A1W6JNQ2	Staphylococcus_phage	98.6	1.1e-34
WP_126493824.1|945799_946048_-	chordopoxvirus fusion protein	NA	A0A1W6JNM8	Staphylococcus_phage	100.0	2.2e-07
WP_162837223.1|946109_946283_-	hypothetical protein	NA	A0A1W6JNL3	Staphylococcus_phage	96.5	1.9e-21
WP_002442287.1|946296_946506_-	hypothetical protein	NA	A0A1W6JNP3	Staphylococcus_phage	94.2	2.6e-30
WP_002436523.1|946593_946800_+	hypothetical protein	NA	A0A141VTR0	Staphylococcus_phage	55.2	4.6e-11
WP_170080852.1|946785_946935_-	hypothetical protein	NA	Q4ZC32	Staphylococcus_virus	61.2	1.9e-06
WP_072098734.1|947021_947255_-	DUF2829 domain-containing protein	NA	A0A0N9SKI8	Staphylococcus_phage	93.5	4.3e-37
WP_168992829.1|947351_948194_-	ParB N-terminal domain-containing protein	NA	A0A141E1C9	Streptococcus_phage	31.8	1.7e-30
WP_170080916.1|948990_949437_-	HNH endonuclease	NA	NA	NA	NA	NA
WP_145471282.1|949437_949815_+	DUF2513 domain-containing protein	NA	A0A1W6JNL0	Staphylococcus_phage	91.9	1.0e-56
WP_168992827.1|949806_949983_-	hypothetical protein	NA	A0A1W6JNL1	Staphylococcus_phage	64.9	1.1e-05
WP_170080853.1|950016_950805_-	phage antirepressor Ant	NA	A0A2H4J5J5	uncultured_Caudovirales_phage	76.4	3.7e-109
WP_053018059.1|950804_950999_-	helix-turn-helix transcriptional regulator	NA	A0A0F6N3M9	Staphylococcus_phage	87.5	2.5e-22
WP_119528113.1|951252_951591_+	helix-turn-helix transcriptional regulator	NA	R4IH08	Staphylococcus_phage	60.9	2.4e-33
WP_170080854.1|951604_952276_+	ImmA/IrrE family metallo-endopeptidase	NA	A0A0F6N3H6	Staphylococcus_phage	44.8	1.7e-46
WP_170080855.1|952361_953030_+	hypothetical protein	NA	A0A1J0MG42	Staphylococcus_phage	34.7	2.1e-28
WP_170080856.1|953080_954127_+|integrase	site-specific integrase	integrase	A0A2H4J9L9	uncultured_Caudovirales_phage	73.0	9.2e-148
WP_002442266.1|954385_954895_-	metallophosphoesterase	NA	NA	NA	NA	NA
954237:954254	attR	CTTCTTTTTTATGTCTTA	NA	NA	NA	NA
WP_037541367.1|954887_955475_-	XTP/dITP diphosphatase	NA	D2KCJ6	Cassava_brown_streak_virus	31.1	5.8e-14
>prophage 6
NZ_CP051643	Staphylococcus caprae strain SY333 chromosome, complete genome	2577038	1045120	1053590	2577038		Synechococcus_phage(33.33%)	9	NA	NA
WP_002442118.1|1045120_1045687_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	41.2	3.8e-31
WP_002442115.1|1045683_1046718_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	42.7	4.1e-63
WP_002442113.1|1046710_1048195_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	32.8	9.0e-48
WP_002442111.1|1048173_1050363_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	40.5	7.4e-139
WP_037541307.1|1050355_1051027_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
WP_002442107.1|1051028_1051289_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_002442106.1|1051285_1051993_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	H8ZMN3	Synechococcus_phage	43.8	5.6e-48
WP_002442104.1|1051993_1053121_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_037541305.1|1053107_1053590_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	42.7	1.8e-21
>prophage 7
NZ_CP051643	Staphylococcus caprae strain SY333 chromosome, complete genome	2577038	1293272	1302187	2577038		uncultured_Caudovirales_phage(71.43%)	8	NA	NA
WP_002441490.1|1293272_1294052_-	ATP-binding cassette domain-containing protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	32.0	4.8e-16
WP_002441488.1|1294048_1295008_-	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	92.0	2.9e-15
WP_002441487.1|1294991_1295966_-	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	95.4	6.8e-161
WP_002441483.1|1296221_1297190_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	96.9	3.8e-180
WP_049402023.1|1297310_1299416_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	95.7	0.0e+00
WP_037541178.1|1299378_1299777_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	89.4	2.7e-63
WP_002441478.1|1300806_1301673_+	DMT family transporter	NA	NA	NA	NA	NA
WP_002441476.1|1301686_1302187_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	72.3	4.5e-52
>prophage 8
NZ_CP051643	Staphylococcus caprae strain SY333 chromosome, complete genome	2577038	1320226	1327882	2577038		Pandoravirus(14.29%)	10	NA	NA
WP_002441461.1|1320226_1321387_-	aminodeoxychorismate synthase component I	NA	A0A0B5J984	Pandoravirus	35.7	3.4e-26
WP_002441459.1|1321376_1321964_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.7	4.4e-38
WP_002441456.1|1322270_1322942_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	56.3	2.2e-65
WP_002441455.1|1322943_1323363_+	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	23.5	2.4e-06
WP_002441452.1|1323366_1324080_+	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	42.7	2.1e-50
WP_002441451.1|1324176_1324776_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002441449.1|1325195_1325633_+	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_037541172.1|1325686_1326160_+	DoxX family membrane protein	NA	NA	NA	NA	NA
WP_002441446.1|1326134_1326824_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	37.0	3.7e-36
WP_002441443.1|1326826_1327882_+	HAMP domain-containing histidine kinase	NA	A0A1V0SGX0	Hokovirus	30.4	2.8e-19
>prophage 9
NZ_CP051643	Staphylococcus caprae strain SY333 chromosome, complete genome	2577038	1787576	1792888	2577038	terminase,transposase	Staphylococcus_phage(57.14%)	9	NA	NA
WP_044466984.1|1787576_1788251_+|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	91.1	9.9e-119
WP_044466905.1|1788396_1789218_+	bifunctional DNA primase/polymerase	NA	Q4ZE69	Staphylococcus_phage	66.3	1.9e-100
WP_044466906.1|1789192_1789474_+	hypothetical protein	NA	Q4ZE68	Staphylococcus_phage	58.3	5.5e-23
WP_044466907.1|1789470_1790115_+	pathogenicity island protein	NA	Q4ZE67	Staphylococcus_phage	63.6	3.2e-74
WP_044466908.1|1790111_1790696_+	hypothetical protein	NA	NA	NA	NA	NA
WP_049402102.1|1791063_1791396_+	hypothetical protein	NA	A0A2H4JHK4	uncultured_Caudovirales_phage	90.0	5.3e-49
WP_002454454.1|1791477_1792065_+	pathogenicity island protein	NA	A0A2H4JBG0	uncultured_Caudovirales_phage	51.0	2.6e-43
WP_002502290.1|1792064_1792280_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002502291.1|1792318_1792888_+|terminase	terminase small subunit	terminase	A0A2H4JBF3	uncultured_Caudovirales_phage	82.6	5.1e-84
>prophage 1
NZ_CP051645	Staphylococcus caprae strain SY333 plasmid pSY333-41, complete sequence	41252	0	6322	41252		Staphylococcus_phage(75.0%)	8	NA	NA
WP_011152955.1|248_1001_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_046466873.1|997_1735_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_002485209.1|2128_2329_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012818111.1|2334_3129_-	ParA family protein	NA	F0PIG8	Enterococcus_phage	35.6	5.0e-29
WP_002441908.1|3937_4189_-	hypothetical protein	NA	NA	NA	NA	NA
WP_170081009.1|4301_4697_-	arsenate reductase (thioredoxin)	NA	A0A2H4PQT9	Staphylococcus_phage	81.2	1.7e-57
WP_002441913.1|4715_6008_-	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	80.5	4.0e-185
WP_002441914.1|6007_6322_-	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	61.5	2.1e-31
>prophage 2
NZ_CP051645	Staphylococcus caprae strain SY333 plasmid pSY333-41, complete sequence	41252	10559	14264	41252		uncultured_virus(50.0%)	5	NA	NA
WP_002441927.1|10559_10880_+	winged helix-turn-helix transcriptional regulator	NA	A0A218MNF3	uncultured_virus	38.8	2.0e-05
WP_170081012.1|10968_11853_+	permease	NA	NA	NA	NA	NA
WP_002441931.1|11866_12001_+	hypothetical protein	NA	NA	NA	NA	NA
WP_030062665.1|12120_12888_-	DUF536 domain-containing protein	NA	NA	NA	NA	NA
WP_037551369.1|13328_14264_+	replication initiator protein A	NA	Q9MCM7	Streptococcus_virus	47.1	1.9e-19
>prophage 3
NZ_CP051645	Staphylococcus caprae strain SY333 plasmid pSY333-41, complete sequence	41252	21909	32853	41252	transposase	Staphylococcus_phage(50.0%)	11	NA	NA
WP_145376072.1|21909_22584_+|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	98.7	2.2e-126
WP_145376082.1|22873_24118_+	peptidoglycan bridge formation glycyltransferase FemA/FemB family protein	NA	NA	NA	NA	NA
WP_152333551.1|24392_25533_+|transposase	IS3 family transposase	transposase	A0A0N9SIX5	Staphylococcus_phage	97.1	2.0e-71
WP_170081015.1|25792_26044_-	DUF334 domain-containing protein	NA	NA	NA	NA	NA
WP_170081016.1|26109_26784_+|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	98.2	2.2e-126
WP_002436855.1|27273_27846_-	alkylmercury lyase	NA	NA	NA	NA	NA
WP_002436871.1|28197_29043_-	penicillin-hydrolyzing class A beta-lactamase BlaZ	NA	A0A1B0VBP7	Salmonella_phage	33.7	7.5e-31
WP_002436863.1|29149_30907_+	beta-lactam sensor/signal transducer BlaR1	NA	NA	NA	NA	NA
WP_002436859.1|30896_31277_+	penicillinase repressor BlaI	NA	NA	NA	NA	NA
WP_049326568.1|31540_32116_+	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	50.6	2.1e-40
WP_011152949.1|32244_32853_+	recombinase family protein	NA	I1ZBD6	Salisaeta_icosahedral_phage	31.1	3.2e-15
>prophage 4
NZ_CP051645	Staphylococcus caprae strain SY333 plasmid pSY333-41, complete sequence	41252	38494	40579	41252		Aureococcus_anophage(100.0%)	1	NA	NA
WP_046466871.1|38494_40579_+	ATP-binding cassette domain-containing protein	NA	A0A076FI99	Aureococcus_anophage	25.4	4.9e-15
