assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_012849375.1_ASM1284937v1	NZ_CP051684	Duganella sp. AF9R3 chromosome, complete genome	1	902587-902731	1	CRISPRCasFinder	no		csa3,WYL,cas3,DEDDh,RT,DinG	Orphan	AGCACCGACCAGCTGCATGCGCTG	24	0	0	NA	NA	NA	2	2	Orphan	csa3,WYL,cas3,DEDDh,RT,DinG	NA,NA|2949aa|down_0|NZ_CP051684.1_902991_911838_+	NA|478aa|up_9|NZ_CP051684.1_893802_895236_+	TIGR03496, FliI_clade1, flagellar protein export ATPase FliI	NA|147aa|up_8|NZ_CP051684.1_895270_895711_+	PRK05689, fliJ, flagella biosynthesis chaperone FliJ	NA|545aa|up_7|NZ_CP051684.1_895729_897364_+	cd17470, T3SS_Flik_C, C-terminal domain of flagellar hook-length control protein FliK and similar domains	NA|172aa|up_6|NZ_CP051684.1_897566_898082_+	PRK07021, fliL, flagellar basal body-associated protein FliL; Reviewed	NA|327aa|up_5|NZ_CP051684.1_898107_899088_+	PRK06666, fliM, flagellar motor switch protein FliM; Validated	NA|146aa|up_4|NZ_CP051684.1_899114_899552_+	PRK07963, fliN, flagellar motor switch protein FliN; Validated	NA|207aa|up_3|NZ_CP051684.1_899608_900229_+	TIGR03500, FliO_TIGR, flagellar biosynthetic protein FliO	NA|254aa|up_2|NZ_CP051684.1_900218_900980_+	PRK05699, fliP, flagellar biosynthesis protein FliP; Reviewed	NA|90aa|up_1|NZ_CP051684.1_900989_901259_+	PRK05700, fliQ, flagellar type III secretion system protein FliQ	NA|284aa|up_0|NZ_CP051684.1_901347_902199_+	PRK05701, fliR, flagellar type III secretion system protein FliR	NA|2949aa|down_0|NZ_CP051684.1_902991_911838_+	NA	NA|423aa|down_1|NZ_CP051684.1_911934_913203_-	PRK08870, flgL, flagellar hook-associated protein FlgL; Reviewed	NA|649aa|down_2|NZ_CP051684.1_913225_915172_-	PRK06945, flgK, flagellar hook-associated protein FlgK; Validated	NA|324aa|down_3|NZ_CP051684.1_915226_916198_-	PRK05684, flgJ, flagellar assembly peptidoglycan hydrolase FlgJ	NA|374aa|down_4|NZ_CP051684.1_916210_917332_-	PRK05303, flgI, flagellar basal body P-ring protein FlgI	NA|221aa|down_5|NZ_CP051684.1_917337_918000_-	pfam02107, FlgH, Flagellar L-ring protein	NA|264aa|down_6|NZ_CP051684.1_918010_918802_-	PRK12693, flgG, flagellar basal body rod protein FlgG; Provisional	NA|247aa|down_7|NZ_CP051684.1_918872_919613_-	PRK12640, flgF, flagellar basal body rod protein FlgF; Reviewed	NA|519aa|down_8|NZ_CP051684.1_919636_921193_-	PRK05682, flgE, flagellar hook protein FlgE; Validated	NA|233aa|down_9|NZ_CP051684.1_921219_921918_-	PRK06655, flgD, flagellar hook assembly protein FlgD
GCF_012849375.1_ASM1284937v1	NZ_CP051684	Duganella sp. AF9R3 chromosome, complete genome	2	903043-903139	2	CRISPRCasFinder	no		csa3,WYL,cas3,DEDDh,RT,DinG	Orphan	AGCACCGACCAGCTGCATGCGCTG	24	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,cas3,DEDDh,RT,DinG	NA,NA	NA|478aa|up_9|NZ_CP051684.1_893802_895236_+	TIGR03496, FliI_clade1, flagellar protein export ATPase FliI	NA|147aa|up_8|NZ_CP051684.1_895270_895711_+	PRK05689, fliJ, flagella biosynthesis chaperone FliJ	NA|545aa|up_7|NZ_CP051684.1_895729_897364_+	cd17470, T3SS_Flik_C, C-terminal domain of flagellar hook-length control protein FliK and similar domains	NA|172aa|up_6|NZ_CP051684.1_897566_898082_+	PRK07021, fliL, flagellar basal body-associated protein FliL; Reviewed	NA|327aa|up_5|NZ_CP051684.1_898107_899088_+	PRK06666, fliM, flagellar motor switch protein FliM; Validated	NA|146aa|up_4|NZ_CP051684.1_899114_899552_+	PRK07963, fliN, flagellar motor switch protein FliN; Validated	NA|207aa|up_3|NZ_CP051684.1_899608_900229_+	TIGR03500, FliO_TIGR, flagellar biosynthetic protein FliO	NA|254aa|up_2|NZ_CP051684.1_900218_900980_+	PRK05699, fliP, flagellar biosynthesis protein FliP; Reviewed	NA|90aa|up_1|NZ_CP051684.1_900989_901259_+	PRK05700, fliQ, flagellar type III secretion system protein FliQ	NA|284aa|up_0|NZ_CP051684.1_901347_902199_+	PRK05701, fliR, flagellar type III secretion system protein FliR	NA|423aa|down_0|NZ_CP051684.1_911934_913203_-	PRK08870, flgL, flagellar hook-associated protein FlgL; Reviewed	NA|649aa|down_1|NZ_CP051684.1_913225_915172_-	PRK06945, flgK, flagellar hook-associated protein FlgK; Validated	NA|324aa|down_2|NZ_CP051684.1_915226_916198_-	PRK05684, flgJ, flagellar assembly peptidoglycan hydrolase FlgJ	NA|374aa|down_3|NZ_CP051684.1_916210_917332_-	PRK05303, flgI, flagellar basal body P-ring protein FlgI	NA|221aa|down_4|NZ_CP051684.1_917337_918000_-	pfam02107, FlgH, Flagellar L-ring protein	NA|264aa|down_5|NZ_CP051684.1_918010_918802_-	PRK12693, flgG, flagellar basal body rod protein FlgG; Provisional	NA|247aa|down_6|NZ_CP051684.1_918872_919613_-	PRK12640, flgF, flagellar basal body rod protein FlgF; Reviewed	NA|519aa|down_7|NZ_CP051684.1_919636_921193_-	PRK05682, flgE, flagellar hook protein FlgE; Validated	NA|233aa|down_8|NZ_CP051684.1_921219_921918_-	PRK06655, flgD, flagellar hook assembly protein FlgD	NA|137aa|down_9|NZ_CP051684.1_921940_922351_-	PRK05681, flgC, flagellar basal body rod protein FlgC; Reviewed
GCF_012849375.1_ASM1284937v1	NZ_CP051684	Duganella sp. AF9R3 chromosome, complete genome	3	903277-903420	3	CRISPRCasFinder	no		csa3,WYL,cas3,DEDDh,RT,DinG	Orphan	AGCACCGACCAGCTGCATGCGCTG	24	0	0	NA	NA	NA	2	2	Orphan	csa3,WYL,cas3,DEDDh,RT,DinG	NA,NA	NA|478aa|up_9|NZ_CP051684.1_893802_895236_+	TIGR03496, FliI_clade1, flagellar protein export ATPase FliI	NA|147aa|up_8|NZ_CP051684.1_895270_895711_+	PRK05689, fliJ, flagella biosynthesis chaperone FliJ	NA|545aa|up_7|NZ_CP051684.1_895729_897364_+	cd17470, T3SS_Flik_C, C-terminal domain of flagellar hook-length control protein FliK and similar domains	NA|172aa|up_6|NZ_CP051684.1_897566_898082_+	PRK07021, fliL, flagellar basal body-associated protein FliL; Reviewed	NA|327aa|up_5|NZ_CP051684.1_898107_899088_+	PRK06666, fliM, flagellar motor switch protein FliM; Validated	NA|146aa|up_4|NZ_CP051684.1_899114_899552_+	PRK07963, fliN, flagellar motor switch protein FliN; Validated	NA|207aa|up_3|NZ_CP051684.1_899608_900229_+	TIGR03500, FliO_TIGR, flagellar biosynthetic protein FliO	NA|254aa|up_2|NZ_CP051684.1_900218_900980_+	PRK05699, fliP, flagellar biosynthesis protein FliP; Reviewed	NA|90aa|up_1|NZ_CP051684.1_900989_901259_+	PRK05700, fliQ, flagellar type III secretion system protein FliQ	NA|284aa|up_0|NZ_CP051684.1_901347_902199_+	PRK05701, fliR, flagellar type III secretion system protein FliR	NA|423aa|down_0|NZ_CP051684.1_911934_913203_-	PRK08870, flgL, flagellar hook-associated protein FlgL; Reviewed	NA|649aa|down_1|NZ_CP051684.1_913225_915172_-	PRK06945, flgK, flagellar hook-associated protein FlgK; Validated	NA|324aa|down_2|NZ_CP051684.1_915226_916198_-	PRK05684, flgJ, flagellar assembly peptidoglycan hydrolase FlgJ	NA|374aa|down_3|NZ_CP051684.1_916210_917332_-	PRK05303, flgI, flagellar basal body P-ring protein FlgI	NA|221aa|down_4|NZ_CP051684.1_917337_918000_-	pfam02107, FlgH, Flagellar L-ring protein	NA|264aa|down_5|NZ_CP051684.1_918010_918802_-	PRK12693, flgG, flagellar basal body rod protein FlgG; Provisional	NA|247aa|down_6|NZ_CP051684.1_918872_919613_-	PRK12640, flgF, flagellar basal body rod protein FlgF; Reviewed	NA|519aa|down_7|NZ_CP051684.1_919636_921193_-	PRK05682, flgE, flagellar hook protein FlgE; Validated	NA|233aa|down_8|NZ_CP051684.1_921219_921918_-	PRK06655, flgD, flagellar hook assembly protein FlgD	NA|137aa|down_9|NZ_CP051684.1_921940_922351_-	PRK05681, flgC, flagellar basal body rod protein FlgC; Reviewed
GCF_012849375.1_ASM1284937v1	NZ_CP051684	Duganella sp. AF9R3 chromosome, complete genome	4	2079988-2080187	1	PILER-CR	no		csa3,WYL,cas3,DEDDh,RT,DinG	Orphan	CCAGCTGGCCGCGCTGACCACGGCGCAAACCG	32	0	0	NA	NA	NA	2	2	Orphan	csa3,WYL,cas3,DEDDh,RT,DinG	NA,NA|437aa|down_6|NZ_CP051684.1_2096707_2098018_-	NA|733aa|up_9|NZ_CP051684.1_2068678_2070877_-	COG1529, CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion]	NA|168aa|up_8|NZ_CP051684.1_2070873_2071377_-	COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]	NA|206aa|up_7|NZ_CP051684.1_2071529_2072147_+	COG3047, OmpW, Outer membrane protein W [Cell envelope biogenesis, outer membrane]	NA|142aa|up_6|NZ_CP051684.1_2072207_2072633_+	PRK14864, PRK14864, biofilm peroxide resistance protein BsmA	NA|546aa|up_5|NZ_CP051684.1_2072714_2074352_-	PRK15048, PRK15048, methyl-accepting chemotaxis protein II; Provisional	NA|96aa|up_4|NZ_CP051684.1_2074486_2074774_-	pfam13663, DUF4148, Domain of unknown function (DUF4148)	NA|536aa|up_3|NZ_CP051684.1_2074955_2076563_+	cd05660, M28_like_PA, M28 Zn-peptidase containing a protease-associated (PA) domain insert	NA|447aa|up_2|NZ_CP051684.1_2076559_2077900_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|187aa|up_1|NZ_CP051684.1_2077905_2078466_-	pfam01227, GTP_cyclohydroI, GTP cyclohydrolase I	NA|272aa|up_0|NZ_CP051684.1_2078520_2079336_-	PRK00241, nudC, NAD(+) diphosphatase	NA|1069aa|down_0|NZ_CP051684.1_2089412_2092619_+	COG3914, Spy, Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]	NA|306aa|down_1|NZ_CP051684.1_2092640_2093558_+	cd00761, Glyco_tranf_GTA_type, Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold	NA|144aa|down_2|NZ_CP051684.1_2093554_2093986_+	pfam05523, FdtA, WxcM-like, C-terminal	NA|295aa|down_3|NZ_CP051684.1_2094014_2094899_-	pfam05523, FdtA, WxcM-like, C-terminal	NA|372aa|down_4|NZ_CP051684.1_2095091_2096207_+	cd00616, AHBA_syn, 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn)	NA|159aa|down_5|NZ_CP051684.1_2096216_2096693_+	cd03358, LbH_WxcM_N_like, WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain	NA|437aa|down_6|NZ_CP051684.1_2096707_2098018_-	NA	NA|603aa|down_7|NZ_CP051684.1_2098040_2099849_-	TIGR01686, modular_polyketide_synthase, FkbH-like domain	NA|264aa|down_8|NZ_CP051684.1_2099864_2100656_-	pfam00535, Glycos_transf_2, Glycosyl transferase family 2	NA|456aa|down_9|NZ_CP051684.1_2100689_2102057_-	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family
GCF_012849375.1_ASM1284937v1	NZ_CP051684	Duganella sp. AF9R3 chromosome, complete genome	5	2376202-2376324	4	CRISPRCasFinder	no		csa3,WYL,cas3,DEDDh,RT,DinG	Orphan	CGAAGACGATCTGCTGGCTTCCATGGCCGCCGC	33	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,cas3,DEDDh,RT,DinG	NA,NA	NA|54aa|up_9|NZ_CP051684.1_2365327_2365489_+	pfam03597, FixS, Cytochrome oxidase maturation protein cbb3-type	NA|474aa|up_8|NZ_CP051684.1_2365580_2367002_+	PRK14488, PRK14488, cbb3-type cytochrome c oxidase subunit I; Provisional	NA|205aa|up_7|NZ_CP051684.1_2367016_2367631_+	PRK14487, PRK14487, cbb3-type cytochrome c oxidase subunit II; Provisional	NA|54aa|up_6|NZ_CP051684.1_2367632_2367794_+	pfam05545, FixQ, Cbb3-type cytochrome oxidase component FixQ	NA|323aa|up_5|NZ_CP051684.1_2367786_2368755_+	TIGR00782, di-heme_cytochrome_cp, cytochrome c oxidase, cbb3-type, subunit III	NA|462aa|up_4|NZ_CP051684.1_2368751_2370137_+	TIGR02745, iron-sulfur_cluster-binding_protein, cytochrome c oxidase accessory protein FixG	NA|168aa|up_3|NZ_CP051684.1_2370148_2370652_+	pfam05751, FixH, FixH	NA|253aa|up_2|NZ_CP051684.1_2370729_2371488_-	PRK11161, PRK11161, fumarate/nitrate reduction transcriptional regulator Fnr	NA|145aa|up_1|NZ_CP051684.1_2371586_2372021_+	COG1846, MarR, Transcriptional regulators [Transcription]	NA|249aa|up_0|NZ_CP051684.1_2372178_2372925_+	pfam12697, Abhydrolase_6, Alpha/beta hydrolase family	NA|775aa|down_0|NZ_CP051684.1_2377130_2379455_+	PRK09840, PRK09840, catecholate siderophore receptor Fiu; Provisional	NA|227aa|down_1|NZ_CP051684.1_2379535_2380216_+	PRK05467, PRK05467, Fe(II)-dependent oxygenase superfamily protein; Provisional	NA|137aa|down_2|NZ_CP051684.1_2380217_2380628_-	cd06588, PhnB_like, Escherichia coli PhnB and similar proteins	NA|323aa|down_3|NZ_CP051684.1_2380708_2381677_-	cd09323, TDT_SLAC1_like, Tellurite-resistance/Dicarboxylate Transporter (TDT) family includes SLAC1 (Slow Anion Channel-Associated 1)	NA|338aa|down_4|NZ_CP051684.1_2381806_2382820_-	cd08292, ETR_like_2, 2-enoyl thioester reductase (ETR) like proteins, child 2	NA|411aa|down_5|NZ_CP051684.1_2382830_2384063_-	pfam06441, EHN, Epoxide hydrolase N-terminus	NA|435aa|down_6|NZ_CP051684.1_2384078_2385383_-	pfam06441, EHN, Epoxide hydrolase N-terminus	NA|251aa|down_7|NZ_CP051684.1_2385386_2386139_-	PRK06500, PRK06500, SDR family oxidoreductase	NA|308aa|down_8|NZ_CP051684.1_2386259_2387183_+	cd08472, PBP2_CrgA_like_3, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold	NA|330aa|down_9|NZ_CP051684.1_2387163_2388153_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
GCF_012849375.1_ASM1284937v1	NZ_CP051684	Duganella sp. AF9R3 chromosome, complete genome	6	2984640-2984786	5	CRISPRCasFinder	no		csa3,WYL,cas3,DEDDh,RT,DinG	Orphan	TTGCAAGGCGCATCTCCTTAGTCGCCACTCATCGCCTGTCTCTGGCG	47	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,cas3,DEDDh,RT,DinG	NA,NA|97aa|down_8|NZ_CP051684.1_2995577_2995868_-	NA|198aa|up_9|NZ_CP051684.1_2977110_2977704_+	TIGR04409, LptC_YrbK, LPS export ABC transporter periplasmic protein LptC	NA|196aa|up_8|NZ_CP051684.1_2977733_2978321_+	TIGR03002, outer_YhbN_LptA, lipopolysaccharide transport periplasmic protein LptA	NA|251aa|up_7|NZ_CP051684.1_2978322_2979075_+	COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only]	NA|491aa|up_6|NZ_CP051684.1_2979086_2980559_+	PRK05932, PRK05932, RNA polymerase factor sigma-54; Reviewed	NA|121aa|up_5|NZ_CP051684.1_2980636_2980999_+	cd00552, RaiA, RaiA ("ribosome-associated inhibitor A", also known as Protein Y (PY), YfiA, and SpotY,  is a stress-response protein that binds the ribosomal subunit interface and arrests translation by interfering with aminoacyl-tRNA binding to the ribosomal A site	NA|306aa|up_4|NZ_CP051684.1_2981057_2981975_+	PRK00325, algL, polysaccharide lyase	NA|355aa|up_3|NZ_CP051684.1_2981985_2983050_+	PRK05617, PRK05617, 3-hydroxyisobutyryl-CoA hydrolase; Provisional	NA|101aa|up_2|NZ_CP051684.1_2983022_2983325_-	COG3636, COG3636, Predicted transcriptional regulator [Transcription]	NA|101aa|up_1|NZ_CP051684.1_2983321_2983624_-	TIGR02683, Uncharacterized_protein_HI_1419, putative addiction module killer protein	NA|287aa|up_0|NZ_CP051684.1_2983671_2984532_-	PRK05416, PRK05416, RNase adapter RapZ	NA|161aa|down_0|NZ_CP051684.1_2985747_2986230_-	TIGR01419, nitro_reg_IIA, PTS IIA-like nitrogen-regulatory protein PtsN	NA|278aa|down_1|NZ_CP051684.1_2986546_2987380_-	PRK11792, queF, 7-cyano-7-deazaguanine reductase; Provisional	NA|217aa|down_2|NZ_CP051684.1_2987439_2988090_-	pfam12773, DZR, Double zinc ribbon	NA|512aa|down_3|NZ_CP051684.1_2988247_2989783_-	PRK09224, PRK09224, threonine ammonia-lyase IlvA	NA|164aa|down_4|NZ_CP051684.1_2989951_2990443_+	COG1238, COG1238, Predicted membrane protein [Function unknown]	NA|1339aa|down_5|NZ_CP051684.1_2990677_2994694_+	pfam12447, DUF3683, Protein of unknown function (DUF3683)	NA|144aa|down_6|NZ_CP051684.1_2994693_2995125_+	COG0537, Hit, Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only]	NA|151aa|down_7|NZ_CP051684.1_2995121_2995574_+	COG3536, COG3536, Uncharacterized protein conserved in bacteria [Function unknown]	NA|97aa|down_8|NZ_CP051684.1_2995577_2995868_-	NA	NA|168aa|down_9|NZ_CP051684.1_2995836_2996340_-	cd18687, PIN_VapC-like, uncharacterized subfamily of the VapC (virulence-associated protein C)-like family of the PIN domain superfamily
