assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_012849095.1_ASM1284909v1	NZ_CP051680	Cohnella sp. MFER-1 chromosome, complete genome	1	323891-324191	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no		DEDDh,csa3,WYL,DinG,cas3,RT	Orphan	ATTTCAATCCACGCTCTCCATACGGAGAGC,ATTTCAATCCACGCTCTCCATACGGAGAGCGAC,ATTTCAATCCACGCTCTCCATACGGAGAGCGAC	30,33,33	0	0	NA	NA	NA:NA:NA	4,4,2	4	Orphan	DEDDh,csa3,WYL,DinG,cas3,RT	NA|343aa|up_4|NZ_CP051680.1_315412_316441_+,NA|87aa|up_0|NZ_CP051680.1_323449_323710_-,NA|142aa|down_3|NZ_CP051680.1_328455_328881_-,NA|117aa|down_6|NZ_CP051680.1_330809_331160_-	NA|405aa|up_9|NZ_CP051680.1_289409_290624_+	COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]	NA|553aa|up_8|NZ_CP051680.1_290629_292288_+	pfam02517, Abi, CAAX protease self-immunity	NA|3417aa|up_7|NZ_CP051680.1_292347_302598_+	PRK12467, PRK12467, peptide synthase; Provisional	NA|4025aa|up_6|NZ_CP051680.1_302613_314688_+	PRK12467, PRK12467, peptide synthase; Provisional	NA|238aa|up_5|NZ_CP051680.1_314684_315398_+	COG3208, GrsT, Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|343aa|up_4|NZ_CP051680.1_315412_316441_+	NA	NA|252aa|up_3|NZ_CP051680.1_316437_317193_+	COG2091, Sfp, Phosphopantetheinyl transferase [Coenzyme metabolism]	NA|1201aa|up_2|NZ_CP051680.1_317400_321003_+	cd00063, FN3, Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin	NA|696aa|up_1|NZ_CP051680.1_321008_323096_+	pfam18316, S-l_SbsC_C, S-layer protein SbsC C-terminal domain	NA|87aa|up_0|NZ_CP051680.1_323449_323710_-	NA	NA|376aa|down_0|NZ_CP051680.1_325146_326274_-	pfam06772, LtrA, Bacterial low temperature requirement A protein (LtrA)	NA|400aa|down_1|NZ_CP051680.1_326397_327597_-	cd17324, MFS_NepI_like, Purine ribonucleoside efflux pump NepI and similar transporters of the Major Facilitator Superfamily	NA|193aa|down_2|NZ_CP051680.1_327798_328377_+	pfam16859, TetR_C_11, Bacterial transcriptional repressor C-terminal	NA|142aa|down_3|NZ_CP051680.1_328455_328881_-	NA	NA|295aa|down_4|NZ_CP051680.1_329509_330394_-	pfam00665, rve, Integrase core domain	NA|120aa|down_5|NZ_CP051680.1_330411_330771_-	pfam13518, HTH_28, Helix-turn-helix domain	NA|117aa|down_6|NZ_CP051680.1_330809_331160_-	NA	NA|491aa|down_7|NZ_CP051680.1_331495_332968_+	pfam03323, GerA, Bacillus/Clostridium GerA spore germination protein	NA|395aa|down_8|NZ_CP051680.1_332939_334124_+	TIGR02887, Spore_germination_protein_B3, germination protein, Ger(x)C family	NA|371aa|down_9|NZ_CP051680.1_334164_335277_+	pfam03845, Spore_permease, Spore germination protein
GCF_012849095.1_ASM1284909v1	NZ_CP051680	Cohnella sp. MFER-1 chromosome, complete genome	2	771567-771690	2	CRISPRCasFinder	no		DEDDh,csa3,WYL,DinG,cas3,RT	Orphan	CGTTGCACTATATCGTTGAACTGTACCGATTGTACCGTTGAACTGTA	47	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,WYL,DinG,cas3,RT	NA|154aa|up_6|NZ_CP051680.1_765454_765916_+,NA|67aa|up_5|NZ_CP051680.1_765979_766180_+,NA	NA|227aa|up_9|NZ_CP051680.1_764121_764802_-	pfam10737, GerPC, Spore germination protein GerPC	NA|72aa|up_8|NZ_CP051680.1_764816_765032_-	pfam10803, GerPB, Spore germination GerPB	NA|79aa|up_7|NZ_CP051680.1_765031_765268_-	pfam10676, gerPA, Spore germination protein gerPA/gerPF	NA|154aa|up_6|NZ_CP051680.1_765454_765916_+	NA	NA|67aa|up_5|NZ_CP051680.1_765979_766180_+	NA	NA|149aa|up_4|NZ_CP051680.1_766731_767178_+	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|79aa|up_3|NZ_CP051680.1_767177_767414_+	pfam01809, Haemolytic, Haemolytic domain	NA|295aa|up_2|NZ_CP051680.1_767952_768837_-	pfam00665, rve, Integrase core domain	NA|120aa|up_1|NZ_CP051680.1_768854_769214_-	pfam13518, HTH_28, Helix-turn-helix domain	NA|426aa|up_0|NZ_CP051680.1_769593_770871_+	pfam01548, DEDD_Tnp_IS110, Transposase	NA|682aa|down_0|NZ_CP051680.1_772114_774160_+	PRK12267, PRK12267, methionyl-tRNA synthetase; Reviewed	NA|182aa|down_1|NZ_CP051680.1_774323_774869_+	TIGR02954, RNA_polymerase_ECF-type_sigma_factor, RNA polymerase sigma-70 factor, TIGR02954 family	NA|376aa|down_2|NZ_CP051680.1_774843_775971_+	pfam18705, DUF5643, Family of unknown function (DUF5643)	NA|335aa|down_3|NZ_CP051680.1_776104_777109_+	cd01017, AdcA, Metal binding protein AdcA	NA|257aa|down_4|NZ_CP051680.1_777206_777977_+	COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]	NA|268aa|down_5|NZ_CP051680.1_777983_778787_+	pfam00950, ABC-3, ABC 3 transport family	NA|236aa|down_6|NZ_CP051680.1_778806_779514_+	pfam02683, DsbD, Cytochrome C biogenesis protein transmembrane region	NA|357aa|down_7|NZ_CP051680.1_779517_780588_-	TIGR04070, photo_TT_lyase, spore photoproduct lyase	NA|141aa|down_8|NZ_CP051680.1_780739_781162_+	PRK03902, PRK03902, transcriptional regulator MntR	NA|321aa|down_9|NZ_CP051680.1_781332_782295_+	cd07207, Pat_ExoU_VipD_like, ExoU and VipD-like proteins; homologus to patatin, cPLA2, and iPLA2
GCF_012849095.1_ASM1284909v1	NZ_CP051680	Cohnella sp. MFER-1 chromosome, complete genome	3	1798238-1798311	3	CRISPRCasFinder	no		DEDDh,csa3,WYL,DinG,cas3,RT	Orphan	TCAGCACCCTTATTTCTCCGGAA	23	1	2	1798261-1798288|1798261-1798288	NZ_CP051680.1_6170907-6170880|NZ_CP051680.1_6171009-6170982	NA	1	1	Orphan	DEDDh,csa3,WYL,DinG,cas3,RT	NA|241aa|up_3|NZ_CP051680.1_1792798_1793521_-,NA|389aa|down_7|NZ_CP051680.1_1806677_1807844_+,NA|77aa|down_9|NZ_CP051680.1_1809562_1809793_-	NA|230aa|up_9|NZ_CP051680.1_1785856_1786546_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|141aa|up_8|NZ_CP051680.1_1786529_1786952_-	COG1725, COG1725, Predicted transcriptional regulators [Transcription]	NA|256aa|up_7|NZ_CP051680.1_1787182_1787950_-	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA	NA|458aa|up_6|NZ_CP051680.1_1788141_1789515_+	PRK09414, PRK09414, NADP-specific glutamate dehydrogenase	NA|498aa|up_5|NZ_CP051680.1_1789939_1791433_-	pfam03050, DDE_Tnp_IS66, Transposase IS66 family	NA|266aa|up_4|NZ_CP051680.1_1791825_1792623_-	PRK00281, PRK00281, undecaprenyl-diphosphate phosphatase	NA|241aa|up_3|NZ_CP051680.1_1792798_1793521_-	NA	NA|377aa|up_2|NZ_CP051680.1_1793588_1794719_-	PRK07682, PRK07682, aminotransferase	NA|558aa|up_1|NZ_CP051680.1_1795221_1796895_+	COG0595, COG0595, mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]	NA|321aa|up_0|NZ_CP051680.1_1796992_1797955_-	COG5006, rhtA, Threonine/homoserine efflux transporter [Amino acid transport and metabolism]	NA|137aa|down_0|NZ_CP051680.1_1798802_1799213_-	pfam09969, DUF2203, Uncharacterized conserved protein (DUF2203)	NA|227aa|down_1|NZ_CP051680.1_1799269_1799950_-	cd05250, CC3_like_SDR_a, CC3(TIP30)-like, atypical (a) SDRs	NA|727aa|down_2|NZ_CP051680.1_1800071_1802252_-	COG1511, COG1511, Predicted membrane protein [Function unknown]	NA|209aa|down_3|NZ_CP051680.1_1802383_1803010_-	PRK13556, PRK13556, FMN-dependent NADH-azoreductase	NA|220aa|down_4|NZ_CP051680.1_1803223_1803883_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|555aa|down_5|NZ_CP051680.1_1803879_1805544_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|302aa|down_6|NZ_CP051680.1_1805614_1806520_-	COG2720, COG2720, Uncharacterized vancomycin resistance protein [Defense mechanisms]	NA|389aa|down_7|NZ_CP051680.1_1806677_1807844_+	NA	NA|497aa|down_8|NZ_CP051680.1_1807883_1809374_-	TIGR03300, assembly_YfgL, outer membrane assembly lipoprotein YfgL	NA|77aa|down_9|NZ_CP051680.1_1809562_1809793_-	NA
GCF_012849095.1_ASM1284909v1	NZ_CP051680	Cohnella sp. MFER-1 chromosome, complete genome	4	2341267-2341405	4	CRISPRCasFinder	no		DEDDh,csa3,WYL,DinG,cas3,RT	Orphan	TACTACGGCCATTATCCCCTTCGATCAGTAAACTTTTCCTCACCACCTCCA	51	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,WYL,DinG,cas3,RT	NA|106aa|up_8|NZ_CP051680.1_2332857_2333175_-,NA	NA|252aa|up_9|NZ_CP051680.1_2331899_2332655_+	TIGR02890, conserved_hypothetical_protein, regulatory protein, yteA family	NA|106aa|up_8|NZ_CP051680.1_2332857_2333175_-	NA	NA|1031aa|up_7|NZ_CP051680.1_2333435_2336528_-	PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewed	NA|162aa|up_6|NZ_CP051680.1_2336982_2337468_-	pfam05103, DivIVA, DivIVA protein	NA|262aa|up_5|NZ_CP051680.1_2337556_2338342_-	COG2302, COG2302, Uncharacterized conserved protein, contains S4-like domain [Function unknown]	NA|89aa|up_4|NZ_CP051680.1_2338357_2338624_-	pfam02325, YGGT, YGGT family	NA|154aa|up_3|NZ_CP051680.1_2338631_2339093_-	COG1799, COG1799, Uncharacterized protein conserved in bacteria [Function unknown]	NA|233aa|up_2|NZ_CP051680.1_2339095_2339794_-	cd00635, PLPDE_III_YBL036c_like, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, YBL036c-like proteins	NA|277aa|up_1|NZ_CP051680.1_2339801_2340632_-	pfam02578, Cu-oxidase_4, Multi-copper polyphenol oxidoreductase laccase	NA|93aa|up_0|NZ_CP051680.1_2340699_2340978_-	TIGR02888, conserved_hypothetical_protein, sporulation protein, YlmC/YmxH family	NA|309aa|down_0|NZ_CP051680.1_2341608_2342535_+	pfam12760, Zn_Tnp_IS1595, Transposase zinc-ribbon domain	NA|261aa|down_1|NZ_CP051680.1_2343219_2344002_-	PRK08215, PRK08215, RNA polymerase sporulation sigma factor SigG	NA|241aa|down_2|NZ_CP051680.1_2344127_2344850_-	PRK08301, PRK08301, RNA polymerase sporulation sigma factor SigE	NA|321aa|down_3|NZ_CP051680.1_2344866_2345829_-	pfam03419, Peptidase_U4, Sporulation factor SpoIIGA	NA|380aa|down_4|NZ_CP051680.1_2346120_2347260_-	PRK09330, PRK09330, cell division protein FtsZ; Validated	NA|417aa|down_5|NZ_CP051680.1_2347313_2348564_-	COG0849, ftsA, Cell division ATPase FtsA [Cell division and chromosome partitioning]	NA|262aa|down_6|NZ_CP051680.1_2348750_2349536_-	COG1589, FtsQ, Cell division septal protein [Cell envelope biogenesis, outer membrane]	NA|425aa|down_7|NZ_CP051680.1_2349616_2350891_-	PRK09369, PRK09369, UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated	NA|302aa|down_8|NZ_CP051680.1_2350907_2351813_-	PRK13905, murB, UDP-N-acetylmuramate dehydrogenase	NA|370aa|down_9|NZ_CP051680.1_2351966_2353076_-	PRK00726, murG, undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
GCF_012849095.1_ASM1284909v1	NZ_CP051680	Cohnella sp. MFER-1 chromosome, complete genome	5	2671631-2671766	2	PILER-CR	no		DEDDh,csa3,WYL,DinG,cas3,RT	Orphan	TGAGACGGTCATTTTGACCGTCACA	25	0	0	NA	NA	NA	2	2	Orphan	DEDDh,csa3,WYL,DinG,cas3,RT	NA,NA|249aa|down_9|NZ_CP051680.1_2689555_2690302_-	NA|425aa|up_9|NZ_CP051680.1_2658084_2659359_-	cd07343, M48A_Zmpste24p_like, Peptidase M48 subfamily A, a type 1 CaaX endopeptidase	NA|113aa|up_8|NZ_CP051680.1_2659472_2659811_+	cd16913, YkuD_like, L,D-transpeptidases/carboxypeptidases similar to Bacillus YkuD	NA|357aa|up_7|NZ_CP051680.1_2659914_2660985_-	cd02511, Beta4Glucosyltransferase, UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide	NA|777aa|up_6|NZ_CP051680.1_2661115_2663446_-	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated	NA|438aa|up_5|NZ_CP051680.1_2663554_2664868_-	COG0677, WecC, UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]	NA|238aa|up_4|NZ_CP051680.1_2664897_2665611_-	cd03358, LbH_WxcM_N_like, WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain	NA|371aa|up_3|NZ_CP051680.1_2665777_2666890_+	cd00616, AHBA_syn, 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn)	NA|365aa|up_2|NZ_CP051680.1_2666886_2667981_+	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|677aa|up_1|NZ_CP051680.1_2668033_2670064_-	cd06433, GT_2_WfgS_like, WfgS and WfeV are involved in O-antigen biosynthesis	NA|316aa|up_0|NZ_CP051680.1_2670307_2671255_+	cd19074, Aldo_ket_red_shaker-like, Shaker potassium channel beta subunit family and similar proteins	NA|474aa|down_0|NZ_CP051680.1_2671805_2673227_-	PRK01077, PRK01077, cobyrinate a,c-diamide synthase	NA|431aa|down_1|NZ_CP051680.1_2673244_2674537_-	cd17333, MFS_FucP_MFSD4_like, Bacterial fucose permease, eukaryotic Major facilitator superfamily domain-containing protein 4, and similar proteins	NA|296aa|down_2|NZ_CP051680.1_2674630_2675518_-	COG2962, RarD, Predicted permeases [General function prediction only]	NA|574aa|down_3|NZ_CP051680.1_2675652_2677374_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|614aa|down_4|NZ_CP051680.1_2677405_2679247_-	TIGR01931, Sulfite_reductase_flavoprotein_alpha-component, sulfite reductase [NADPH] flavoprotein, alpha-component	NA|574aa|down_5|NZ_CP051680.1_2679429_2681151_-	pfam02368, Big_2, Bacterial Ig-like domain (group 2)	NA|1271aa|down_6|NZ_CP051680.1_2681205_2685018_-	COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]	NA|245aa|down_7|NZ_CP051680.1_2685199_2685934_+	pfam07833, Cu_amine_oxidN1, Copper amine oxidase N-terminal domain	NA|1116aa|down_8|NZ_CP051680.1_2686038_2689386_-	TIGR03903, TOMM_kin_cyc, TOMM system kinase/cyclase fusion protein	NA|249aa|down_9|NZ_CP051680.1_2689555_2690302_-	NA
GCF_012849095.1_ASM1284909v1	NZ_CP051680	Cohnella sp. MFER-1 chromosome, complete genome	6	3077227-3077301	5	CRISPRCasFinder	no		DEDDh,csa3,WYL,DinG,cas3,RT	Orphan	AACTAGTTGTATTTTTTACACTTAG	25	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,WYL,DinG,cas3,RT	NA|52aa|up_1|NZ_CP051680.1_3076118_3076274_+,NA|225aa|up_0|NZ_CP051680.1_3076260_3076935_+,NA	NA|228aa|up_9|NZ_CP051680.1_3065941_3066625_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|495aa|up_8|NZ_CP051680.1_3066621_3068106_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|393aa|up_7|NZ_CP051680.1_3068102_3069281_+	PRK03629, tolB, Tol-Pal system protein TolB	NA|521aa|up_6|NZ_CP051680.1_3069321_3070884_+	cd17536, REC_YesN-like, phosphoacceptor receiver (REC) domain of YesN and related helix-turn-helix containing response regulators	NA|577aa|up_5|NZ_CP051680.1_3070897_3072628_+	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|459aa|up_4|NZ_CP051680.1_3072745_3074122_+	cd13585, PBP2_TMBP_like, The periplasmic-binding component of ABC transport systems specific for trehalose/maltose and similar oligosaccharides; possess type 2 periplasmic binding fold	NA|296aa|up_3|NZ_CP051680.1_3074213_3075101_+	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|268aa|up_2|NZ_CP051680.1_3075097_3075901_+	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|52aa|up_1|NZ_CP051680.1_3076118_3076274_+	NA	NA|225aa|up_0|NZ_CP051680.1_3076260_3076935_+	NA	NA|262aa|down_0|NZ_CP051680.1_3077880_3078666_-	PRK08640, sdhB, succinate dehydrogenase iron-sulfur subunit; Reviewed	NA|586aa|down_1|NZ_CP051680.1_3078669_3080427_-	PRK08641, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed	NA|224aa|down_2|NZ_CP051680.1_3080445_3081117_-	cd03497, SQR_TypeB_1_TM, Succinate:quinone oxidoreductase (SQR) Type B subfamily 1, transmembrane subunit; composed of proteins similar to Bacillus subtilis SQR	NA|306aa|down_3|NZ_CP051680.1_3081286_3082204_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|218aa|down_4|NZ_CP051680.1_3082478_3083132_+	cd14667, 3D_containing_proteins, Non-mltA associated 3D domain containing proteins, named for 3 conserved aspartate residues	NA|256aa|down_5|NZ_CP051680.1_3083271_3084039_-	cd10917, CE4_NodB_like_6s_7s, Catalytic NodB homology domain of rhizobial NodB-like proteins	NA|221aa|down_6|NZ_CP051680.1_3084162_3084825_-	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]	NA|463aa|down_7|NZ_CP051680.1_3084839_3086228_-	TIGR00933, Trk_system_potassium_uptake_protein_trkH	NA|460aa|down_8|NZ_CP051680.1_3086199_3087579_-	TIGR00933, Trk_system_potassium_uptake_protein_trkH	NA|575aa|down_9|NZ_CP051680.1_3088128_3089853_+	pfam02517, Abi, CAAX protease self-immunity
GCF_012849095.1_ASM1284909v1	NZ_CP051680	Cohnella sp. MFER-1 chromosome, complete genome	7	4293963-4294037	6	CRISPRCasFinder	no		DEDDh,csa3,WYL,DinG,cas3,RT	Orphan	TCTAAGTGTAAAATGTGCAATTAG	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,WYL,DinG,cas3,RT	NA,NA|84aa|down_9|NZ_CP051680.1_4302471_4302723_-	NA|304aa|up_9|NZ_CP051680.1_4281775_4282687_-	COG0657, Aes, Esterase/lipase [Lipid metabolism]	NA|905aa|up_8|NZ_CP051680.1_4282736_4285451_-	pfam17389, Bac_rhamnosid6H, Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain	NA|276aa|up_7|NZ_CP051680.1_4285484_4286312_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|290aa|up_6|NZ_CP051680.1_4286311_4287181_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|449aa|up_5|NZ_CP051680.1_4287246_4288593_-	COG1653, UgpB, ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]	NA|252aa|up_4|NZ_CP051680.1_4288681_4289437_-	PRK07231, FabG-like, SDR family oxidoreductase	NA|340aa|up_3|NZ_CP051680.1_4289438_4290458_-	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases	NA|323aa|up_2|NZ_CP051680.1_4290500_4291469_-	cd05299, CtBP_dh, C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor	NA|215aa|up_1|NZ_CP051680.1_4291482_4292127_-	COG1878, COG1878, Kynurenine formamidase [Amino acid transport and metabolism]	NA|380aa|up_0|NZ_CP051680.1_4292584_4293724_+	cd06267, PBP1_LacI_sugar_binding-like, ligand binding domain of the LacI transcriptional regulator family belonging to the type 1 periplasmic-binding fold protein superfamily	NA|405aa|down_0|NZ_CP051680.1_4294327_4295542_-	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|295aa|down_1|NZ_CP051680.1_4295671_4296556_+	cd08434, PBP2_GltC_like, The substrate binding domain of LysR-type transcriptional regulator GltC, which activates gltA expression of glutamate synthase operon, contains type 2 periplasmic binding fold	NA|272aa|down_2|NZ_CP051680.1_4296632_4297448_-	cd01144, BtuF, Cobalamin binding protein BtuF	NA|198aa|down_3|NZ_CP051680.1_4297463_4298057_-	pfam02572, CobA_CobO_BtuR, ATP:corrinoid adenosyltransferase BtuR/CobO/CobP	NA|263aa|down_4|NZ_CP051680.1_4298053_4298842_-	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]	NA|346aa|down_5|NZ_CP051680.1_4298848_4299886_-	PRK09535, btuC, cobalamin ABC transporter permease BtuC	NA|341aa|down_6|NZ_CP051680.1_4299878_4300901_-	cd01143, YvrC, Periplasmic binding protein YvrC	NA|114aa|down_7|NZ_CP051680.1_4301649_4301991_-	COG2824, PhnA, Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism [Inorganic ion transport and metabolism]	NA|141aa|down_8|NZ_CP051680.1_4302052_4302475_-	cd09873, PIN_Pae0151-like, VapC-like PIN domain of the Pyrobaculum aerophilum Pae0151 and Pae2754 proteins and homologs	NA|84aa|down_9|NZ_CP051680.1_4302471_4302723_-	NA
GCF_012849095.1_ASM1284909v1	NZ_CP051680	Cohnella sp. MFER-1 chromosome, complete genome	8	5157505-5157607	7	CRISPRCasFinder	no		DEDDh,csa3,WYL,DinG,cas3,RT	Orphan	GGATTGCCGTTGTCGGTTCCGTTGT	25	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,WYL,DinG,cas3,RT	NA|51aa|up_5|NZ_CP051680.1_5151415_5151568_+,NA|177aa|down_5|NZ_CP051680.1_5171385_5171916_-,NA|172aa|down_6|NZ_CP051680.1_5171938_5172454_-	NA|343aa|up_9|NZ_CP051680.1_5145735_5146764_+	cd02932, OYE_YqiM_FMN, Old yellow enzyme (OYE) YqjM-like FMN binding domain	NA|300aa|up_8|NZ_CP051680.1_5147241_5148141_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|287aa|up_7|NZ_CP051680.1_5148165_5149026_-	COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]	NA|697aa|up_6|NZ_CP051680.1_5149151_5151242_-	cd09621, CBM9_like_5, DOMON-like type 9 carbohydrate binding module	NA|51aa|up_5|NZ_CP051680.1_5151415_5151568_+	NA	NA|497aa|up_4|NZ_CP051680.1_5151900_5153391_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|204aa|up_3|NZ_CP051680.1_5153619_5154231_+	pfam14278, TetR_C_8, Transcriptional regulator C-terminal region	NA|484aa|up_2|NZ_CP051680.1_5154336_5155788_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|136aa|up_1|NZ_CP051680.1_5155986_5156394_+	pfam12760, Zn_Tnp_IS1595, Transposase zinc-ribbon domain	NA|260aa|up_0|NZ_CP051680.1_5156515_5157295_-	cd05826, Sortase_B, Sortase domain found in class B sortases	NA|151aa|down_0|NZ_CP051680.1_5163697_5164150_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|809aa|down_1|NZ_CP051680.1_5164269_5166696_-	COG3973, COG3973, Superfamily I DNA and RNA helicases [General function prediction only]	NA|477aa|down_2|NZ_CP051680.1_5166924_5168355_-	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|184aa|down_3|NZ_CP051680.1_5168467_5169019_+	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]	NA|716aa|down_4|NZ_CP051680.1_5169199_5171347_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|177aa|down_5|NZ_CP051680.1_5171385_5171916_-	NA	NA|172aa|down_6|NZ_CP051680.1_5171938_5172454_-	NA	NA|425aa|down_7|NZ_CP051680.1_5172867_5174142_-	TIGR04094, AraC_family_transcriptional_regulator, YSIRK-targeted surface antigen transcriptional regulator	NA|252aa|down_8|NZ_CP051680.1_5174294_5175050_+	PRK06172, PRK06172, SDR family oxidoreductase	NA|250aa|down_9|NZ_CP051680.1_5175099_5175849_+	cd05233, SDR_c, classical (c) SDRs
GCF_012849095.1_ASM1284909v1	NZ_CP051680	Cohnella sp. MFER-1 chromosome, complete genome	9	5359374-5359509	8	CRISPRCasFinder	no		DEDDh,csa3,WYL,DinG,cas3,RT	Orphan	AATACCTGTATAAGTACAGTTATT	24	0	0	NA	NA	NA	2	2	Orphan	DEDDh,csa3,WYL,DinG,cas3,RT	NA|60aa|up_3|NZ_CP051680.1_5353090_5353270_-,NA|233aa|up_1|NZ_CP051680.1_5355101_5355800_-,NA	NA|67aa|up_9|NZ_CP051680.1_5347147_5347348_+	pfam02979, NHase_alpha, Nitrile hydratase, alpha chain	NA|267aa|up_8|NZ_CP051680.1_5347405_5348206_-	cd07733, YycJ-like_MBL-fold, uncharacterized subgroup which includes Bacillus subtilis YycJ and related proteins; MBL-fold metallo hydrolase domain	NA|256aa|up_7|NZ_CP051680.1_5348246_5349014_-	pfam09648, YycI, YycH protein	NA|438aa|up_6|NZ_CP051680.1_5349058_5350372_-	pfam07435, YycH, YycH protein	NA|612aa|up_5|NZ_CP051680.1_5350368_5352204_-	NF033092, HK_WalK, cell wall metabolism sensor histidine kinase WalK	NA|247aa|up_4|NZ_CP051680.1_5352200_5352941_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|60aa|up_3|NZ_CP051680.1_5353090_5353270_-	NA	NA|524aa|up_2|NZ_CP051680.1_5353350_5354922_-	COG0739, NlpD, Membrane proteins related to metalloendopeptidases [Cell envelope biogenesis, outer membrane]	NA|233aa|up_1|NZ_CP051680.1_5355101_5355800_-	NA	NA|1012aa|up_0|NZ_CP051680.1_5356078_5359114_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|300aa|down_0|NZ_CP051680.1_5359622_5360522_-	cd13639, PBP2_OpuAC_like, Substrate binding domain of Lactococcus lactis ABC-type transporter OpuA and related proteins; the type 2 periplasmic binding protein fold	NA|279aa|down_1|NZ_CP051680.1_5360530_5361367_-	COG4176, ProW, ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism]	NA|400aa|down_2|NZ_CP051680.1_5361363_5362563_-	COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]	NA|187aa|down_3|NZ_CP051680.1_5362826_5363387_+	COG1510, COG1510, Predicted transcriptional regulators [Transcription]	NA|430aa|down_4|NZ_CP051680.1_5363455_5364745_-	PRK01117, PRK01117, adenylosuccinate synthetase; Provisional	NA|459aa|down_5|NZ_CP051680.1_5364924_5366301_-	PRK05748, PRK05748, replicative DNA helicase; Provisional	NA|148aa|down_6|NZ_CP051680.1_5366305_5366749_-	PRK00137, rplI, 50S ribosomal protein L9; Reviewed	NA|655aa|down_7|NZ_CP051680.1_5366745_5368710_-	COG3887, COG3887, Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain [Signal transduction mechanisms]	NA|302aa|down_8|NZ_CP051680.1_5368782_5369688_-	pfam09991, DUF2232, Predicted membrane protein (DUF2232)	NA|101aa|down_9|NZ_CP051680.1_5369693_5369996_-	pfam12643, MazG-like, MazG-like family
GCF_012849095.1_ASM1284909v1	NZ_CP051680	Cohnella sp. MFER-1 chromosome, complete genome	10	5477046-5477175	9	CRISPRCasFinder	no	cas3	DEDDh,csa3,WYL,DinG,cas3,RT	Unclear	TATAGAGTACTCACAGTACGCTACAG	26	0	0	NA	NA	NA	2	2	Unclear	DEDDh,csa3,WYL,DinG,cas3,RT	NA,NA|67aa|down_0|NZ_CP051680.1_5477370_5477571_-	NA|293aa|up_9|NZ_CP051680.1_5468789_5469668_+	pfam05582, Peptidase_U57, YabG peptidase U57	NA|92aa|up_8|NZ_CP051680.1_5469817_5470093_+	pfam06257, VEG, Biofilm formation stimulator VEG	NA|60aa|up_7|NZ_CP051680.1_5470215_5470395_+	pfam00269, SASP, Small, acid-soluble spore proteins, alpha/beta type	NA|288aa|up_6|NZ_CP051680.1_5471012_5471876_+	PRK00128, ipk, 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional	NA|276aa|up_5|NZ_CP051680.1_5471978_5472806_+	PRK09213, PRK09213, pur operon repressor; Provisional	NA|133aa|up_4|NZ_CP051680.1_5472834_5473233_+	TIGR00004, RutC_family_protein, reactive intermediate/imine deaminase	NA|95aa|up_3|NZ_CP051680.1_5473343_5473628_+	PRK13259, PRK13259, septation regulator SpoVG	NA|466aa|up_2|NZ_CP051680.1_5473746_5475144_+	PRK14354, glmU, bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	NA|319aa|up_1|NZ_CP051680.1_5475161_5476118_+	PRK01259, PRK01259, ribose-phosphate diphosphokinase	NA|215aa|up_0|NZ_CP051680.1_5476172_5476817_+	PRK05618, PRK05618, 50S ribosomal protein L25/general stress protein Ctc; Reviewed	NA|67aa|down_0|NZ_CP051680.1_5477370_5477571_-	NA	NA|189aa|down_1|NZ_CP051680.1_5477690_5478257_+	PRK05426, PRK05426, peptidyl-tRNA hydrolase; Provisional	NA|77aa|down_2|NZ_CP051680.1_5478439_5478670_+	pfam10955, DUF2757, Protein of unknown function (DUF2757)	cas3|1174aa|down_3|NZ_CP051680.1_5478871_5482393_+	COG1197, Mfd, Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]	NA|367aa|down_4|NZ_CP051680.1_5482379_5483480_+	PRK02998, prsA, peptidylprolyl isomerase; Reviewed	NA|242aa|down_5|NZ_CP051680.1_5483892_5484618_+	TIGR03425, urea_degr_2, urea carboxylase-associated protein 2	NA|219aa|down_6|NZ_CP051680.1_5484651_5485308_+	TIGR03424, urea_degr_1, urea carboxylase-associated protein 1	NA|1212aa|down_7|NZ_CP051680.1_5485340_5488976_+	TIGR02712, Includes:_Allophanate_hydrolase, urea carboxylase	NA|394aa|down_8|NZ_CP051680.1_5491199_5492381_+	pfam00872, Transposase_mut, Transposase, Mutator family	NA|419aa|down_9|NZ_CP051680.1_5493038_5494295_+	TIGR03407, urea_ABC_UrtA, urea ABC transporter, urea binding protein
GCF_012849095.1_ASM1284909v1	NZ_CP051680	Cohnella sp. MFER-1 chromosome, complete genome	11	5867898-5868005	10	CRISPRCasFinder	no	DEDDh	DEDDh,csa3,WYL,DinG,cas3,RT	Unclear	CGAGCTTGATGATCTCGGATTGGAGATCGA	30	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,WYL,DinG,cas3,RT	NA|342aa|up_6|NZ_CP051680.1_5861908_5862934_+,NA|227aa|up_1|NZ_CP051680.1_5865787_5866468_-,NA|143aa|up_0|NZ_CP051680.1_5866583_5867012_+,NA	NA|397aa|up_9|NZ_CP051680.1_5859404_5860595_-	PRK13656, PRK13656, enoyl-[acyl-carrier-protein] reductase FabV	NA|185aa|up_8|NZ_CP051680.1_5860881_5861436_+	cd14845, L-Ala-D-Glu_peptidase_like, L-Ala-D-Glu peptidase, also known as L-alanyl-D-glutamate endopeptidase	NA|115aa|up_7|NZ_CP051680.1_5861507_5861852_+	pfam13828, DUF4190, Domain of unknown function (DUF4190)	NA|342aa|up_6|NZ_CP051680.1_5861908_5862934_+	NA	DEDDh|258aa|up_5|NZ_CP051680.1_5863018_5863792_-	cd06133, ERI-1_3'hExo_like, DEDDh 3'-5' exonuclease domain of Caenorhabditis elegans ERI-1, human 3' exonuclease, and similar proteins	NA|129aa|up_4|NZ_CP051680.1_5864000_5864387_+	cd07245, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|252aa|up_3|NZ_CP051680.1_5864383_5865139_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|200aa|up_2|NZ_CP051680.1_5865204_5865804_+	COG5663, COG5663, Uncharacterized conserved protein [Function unknown]	NA|227aa|up_1|NZ_CP051680.1_5865787_5866468_-	NA	NA|143aa|up_0|NZ_CP051680.1_5866583_5867012_+	NA	NA|179aa|down_0|NZ_CP051680.1_5869585_5870122_+	PRK09641, PRK09641, RNA polymerase sigma factor SigW; Provisional	NA|238aa|down_1|NZ_CP051680.1_5870181_5870895_-	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|339aa|down_2|NZ_CP051680.1_5870905_5871922_-	cd01166, KdgK, 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP)	NA|255aa|down_3|NZ_CP051680.1_5871914_5872679_-	TIGR03581, EF_0839, conserved hypothetical protein EF_0839/AHA_3917	NA|368aa|down_4|NZ_CP051680.1_5872680_5873784_-	TIGR01437, selA_rel, uncharacterized pyridoxal phosphate-dependent enzyme	NA|371aa|down_5|NZ_CP051680.1_5873749_5874862_-	TIGR03583, EF_0837, probable amidohydrolase EF_0837/AHA_3915	NA|643aa|down_6|NZ_CP051680.1_5875045_5876974_+	cd06565, GH20_GcnA-like, Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins	NA|485aa|down_7|NZ_CP051680.1_5877375_5878830_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|483aa|down_8|NZ_CP051680.1_5879010_5880459_-	cd05289, MDR_like_2, alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases	NA|119aa|down_9|NZ_CP051680.1_5880921_5881278_+	COG2336, MazE, Growth regulator [Signal transduction mechanisms]
GCF_012849095.1_ASM1284909v1	NZ_CP051680	Cohnella sp. MFER-1 chromosome, complete genome	12	6543117-6543253	11	CRISPRCasFinder	no		DEDDh,csa3,WYL,DinG,cas3,RT	Orphan	AACTAGTTGCAGGATTTACACTTAG	25	0	0	NA	NA	NA	2	2	Orphan	DEDDh,csa3,WYL,DinG,cas3,RT	NA,NA	NA|200aa|up_9|NZ_CP051680.1_6520439_6521039_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|771aa|up_8|NZ_CP051680.1_6521155_6523468_+	COG2409, COG2409, Predicted drug exporters of the RND superfamily [General function prediction only]	NA|133aa|up_7|NZ_CP051680.1_6523485_6523884_+	pfam06993, DUF1304, Protein of unknown function (DUF1304)	NA|394aa|up_6|NZ_CP051680.1_6524640_6525822_-	pfam00872, Transposase_mut, Transposase, Mutator family	NA|292aa|up_5|NZ_CP051680.1_6526444_6527320_+	COG4209, LplB, ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism]	NA|296aa|up_4|NZ_CP051680.1_6527354_6528242_+	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|578aa|up_3|NZ_CP051680.1_6528320_6530054_+	cd13582, PBP2_AlgQ_like_3, Periplasmic-binding component of alginate-specific ABC uptake system-like; contains the type 2 periplasmic binding fold	NA|524aa|up_2|NZ_CP051680.1_6530134_6531706_+	cd17536, REC_YesN-like, phosphoacceptor receiver (REC) domain of YesN and related helix-turn-helix containing response regulators	NA|596aa|up_1|NZ_CP051680.1_6531711_6533499_+	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|3070aa|up_0|NZ_CP051680.1_6533656_6542866_+	cd08023, GH16_laminarinase_like, Laminarinase, member of the glycosyl hydrolase family 16	NA|256aa|down_0|NZ_CP051680.1_6544177_6544945_+	PRK05653, fabG, 3-oxoacyl-ACP reductase FabG	NA|366aa|down_1|NZ_CP051680.1_6544978_6546076_+	cd03316, MR_like, Mandelate racemase (MR)-like subfamily of the enolase superfamily	NA|779aa|down_2|NZ_CP051680.1_6546228_6548565_+	pfam14498, Glyco_hyd_65N_2, Glycosyl hydrolase family 65, N-terminal domain	NA|767aa|down_3|NZ_CP051680.1_6548743_6551044_+	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|546aa|down_4|NZ_CP051680.1_6551113_6552751_+	cd13581, PBP2_AlgQ_like_2, Periplasmic-binding component of alginate-specific ABC uptake system-like; contains the type 2 periplasmic binding fold	NA|558aa|down_5|NZ_CP051680.1_6553004_6554678_+	cd13581, PBP2_AlgQ_like_2, Periplasmic-binding component of alginate-specific ABC uptake system-like; contains the type 2 periplasmic binding fold	NA|318aa|down_6|NZ_CP051680.1_6554920_6555874_+	COG4209, LplB, ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism]	NA|300aa|down_7|NZ_CP051680.1_6555889_6556789_+	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|563aa|down_8|NZ_CP051680.1_6556905_6558594_+	cd13581, PBP2_AlgQ_like_2, Periplasmic-binding component of alginate-specific ABC uptake system-like; contains the type 2 periplasmic binding fold	NA|797aa|down_9|NZ_CP051680.1_6558672_6561063_+	pfam14498, Glyco_hyd_65N_2, Glycosyl hydrolase family 65, N-terminal domain
GCF_012849095.1_ASM1284909v1	NZ_CP051680	Cohnella sp. MFER-1 chromosome, complete genome	13	7181403-7181476	12	CRISPRCasFinder	no		DEDDh,csa3,WYL,DinG,cas3,RT	Orphan	CCATTGTCGCAAAATGCGACAAT	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,WYL,DinG,cas3,RT	NA,NA	NA|1026aa|up_9|NZ_CP051680.1_7165372_7168450_+	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms]	NA|375aa|up_8|NZ_CP051680.1_7168446_7169571_+	COG3947, COG3947, Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]	NA|121aa|up_7|NZ_CP051680.1_7169745_7170108_+	cd17542, REC_CheY, phosphoacceptor receiver (REC) domain of chemotaxis protein CheY	NA|297aa|up_6|NZ_CP051680.1_7170227_7171118_-	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|656aa|up_5|NZ_CP051680.1_7171256_7173224_+	COG3533, COG3533, Uncharacterized protein conserved in bacteria [Function unknown]	NA|472aa|up_4|NZ_CP051680.1_7173396_7174812_+	cd13585, PBP2_TMBP_like, The periplasmic-binding component of ABC transport systems specific for trehalose/maltose and similar oligosaccharides; possess type 2 periplasmic binding fold	NA|308aa|up_3|NZ_CP051680.1_7174884_7175808_+	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|290aa|up_2|NZ_CP051680.1_7175804_7176674_+	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|295aa|up_1|NZ_CP051680.1_7177358_7178243_-	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|889aa|up_0|NZ_CP051680.1_7178385_7181052_+	pfam17389, Bac_rhamnosid6H, Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain	NA|277aa|down_0|NZ_CP051680.1_7181524_7182355_+	cd10967, CE4_GLA_like_6s, Putative catalytic NodB homology domain of gellan lyase and similar proteins	NA|318aa|down_1|NZ_CP051680.1_7182338_7183292_+	pfam01636, APH, Phosphotransferase enzyme family	NA|279aa|down_2|NZ_CP051680.1_7183514_7184351_+	COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]	NA|546aa|down_3|NZ_CP051680.1_7184462_7186100_+	cd17536, REC_YesN-like, phosphoacceptor receiver (REC) domain of YesN and related helix-turn-helix containing response regulators	NA|606aa|down_4|NZ_CP051680.1_7186092_7187910_+	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|909aa|down_5|NZ_CP051680.1_7188056_7190783_-	COG0383, AMS1, Alpha-mannosidase [Carbohydrate transport and metabolism]	NA|699aa|down_6|NZ_CP051680.1_7191091_7193188_+	cd11576, GH99_GH71_like_2, Uncharacterized glycoside hydrolase family 99-like domain	NA|210aa|down_7|NZ_CP051680.1_7194307_7194937_+	cd04084, CBM6_xylanase-like, Carbohydrate Binding Module 6 (CBM6); many are appended to glycoside hydrolase (GH) family 11 and GH43 xylanase domains	NA|281aa|down_8|NZ_CP051680.1_7195048_7195891_+	cd05826, Sortase_B, Sortase domain found in class B sortases	NA|441aa|down_9|NZ_CP051680.1_7199282_7200605_+	cd08990, GH43_AXH_like, Glycosyl hydrolase family 43 protein, includes arabinoxylan arabinofuranohydrolase, beta-xylosidase, endo-1,4-beta-xylanase, and alpha-L-arabinofuranosidase
GCF_012849095.1_ASM1284909v1	NZ_CP051680	Cohnella sp. MFER-1 chromosome, complete genome	14	7265511-7265756	2	CRT	no		DEDDh,csa3,WYL,DinG,cas3,RT	Orphan	CGAANATAAGGTACTCACAGTGCNCTACNG	30	0	0	NA	NA	NA	4	4	Orphan	DEDDh,csa3,WYL,DinG,cas3,RT	NA|175aa|up_6|NZ_CP051680.1_7261065_7261590_+,NA|116aa|up_5|NZ_CP051680.1_7261589_7261937_+,NA|87aa|up_1|NZ_CP051680.1_7264259_7264520_-,NA	NA|365aa|up_9|NZ_CP051680.1_7257243_7258338_+	cd01541, PBP1_AraR, ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators	NA|235aa|up_8|NZ_CP051680.1_7258445_7259150_+	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD	NA|558aa|up_7|NZ_CP051680.1_7259191_7260865_+	PRK04123, PRK04123, ribulokinase; Provisional	NA|175aa|up_6|NZ_CP051680.1_7261065_7261590_+	NA	NA|116aa|up_5|NZ_CP051680.1_7261589_7261937_+	NA	NA|265aa|up_4|NZ_CP051680.1_7261994_7262789_-	pfam14285, DUF4367, Domain of unknown function (DUF4367)	NA|192aa|up_3|NZ_CP051680.1_7262781_7263357_-	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family	NA|217aa|up_2|NZ_CP051680.1_7263603_7264254_+	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|87aa|up_1|NZ_CP051680.1_7264259_7264520_-	NA	NA|196aa|up_0|NZ_CP051680.1_7264596_7265184_+	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated	NA|345aa|down_0|NZ_CP051680.1_7266116_7267151_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|456aa|down_1|NZ_CP051680.1_7267265_7268633_+	cd13585, PBP2_TMBP_like, The periplasmic-binding component of ABC transport systems specific for trehalose/maltose and similar oligosaccharides; possess type 2 periplasmic binding fold	NA|303aa|down_2|NZ_CP051680.1_7268747_7269656_+	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|275aa|down_3|NZ_CP051680.1_7269645_7270470_+	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|374aa|down_4|NZ_CP051680.1_7270469_7271591_+	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|247aa|down_5|NZ_CP051680.1_7271586_7272327_+	cd03142, GATase1_ThuA, Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA)	NA|293aa|down_6|NZ_CP051680.1_7272486_7273365_+	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]	NA|115aa|down_7|NZ_CP051680.1_7273529_7273874_-	COG1733, COG1733, Predicted transcriptional regulators [Transcription]	NA|352aa|down_8|NZ_CP051680.1_7274019_7275075_+	TIGR03858, LLM_2I7G, probable oxidoreductase, LLM family	NA|189aa|down_9|NZ_CP051680.1_7275092_7275659_+	pfam03358, FMN_red, NADPH-dependent FMN reductase
GCF_012849095.1_ASM1284909v1	NZ_CP051680	Cohnella sp. MFER-1 chromosome, complete genome	15	7470467-7470542	13	CRISPRCasFinder	no		DEDDh,csa3,WYL,DinG,cas3,RT	Orphan	TCTGGTTTAAGCCCTTCTGCCGGG	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,WYL,DinG,cas3,RT	NA|303aa|up_7|NZ_CP051680.1_7460984_7461893_+,NA|81aa|up_1|NZ_CP051680.1_7466807_7467050_+,NA	NA|419aa|up_9|NZ_CP051680.1_7459205_7460462_+	smart00871, AraC_E_bind, Bacterial transcription activator, effector binding domain	NA|165aa|up_8|NZ_CP051680.1_7460493_7460988_+	smart00871, AraC_E_bind, Bacterial transcription activator, effector binding domain	NA|303aa|up_7|NZ_CP051680.1_7460984_7461893_+	NA	NA|350aa|up_6|NZ_CP051680.1_7461992_7463042_+	PRK05731, PRK05731, thiamine monophosphate kinase; Provisional	NA|173aa|up_5|NZ_CP051680.1_7463050_7463569_+	pfam02367, TsaE, Threonylcarbamoyl adenosine biosynthesis protein TsaE	NA|265aa|up_4|NZ_CP051680.1_7463565_7464360_+	TIGR03725, T6A_YeaZ, tRNA threonylcarbamoyl adenosine modification protein YeaZ	NA|196aa|up_3|NZ_CP051680.1_7464277_7464865_+	TIGR01575, rimI, ribosomal-protein-alanine acetyltransferase	NA|352aa|up_2|NZ_CP051680.1_7464861_7465917_+	PRK09604, PRK09604, tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	NA|81aa|up_1|NZ_CP051680.1_7466807_7467050_+	NA	NA|532aa|up_0|NZ_CP051680.1_7467153_7468749_+	PRK00915, PRK00915, 2-isopropylmalate synthase; Validated	NA|639aa|down_0|NZ_CP051680.1_7470993_7472910_-	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|224aa|down_1|NZ_CP051680.1_7473020_7473692_+	TIGR02727, Uncharacterized_protein_YqgN, 5,10-methenyltetrahydrofolate synthetase	NA|166aa|down_2|NZ_CP051680.1_7473699_7474197_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|163aa|down_3|NZ_CP051680.1_7474252_7474741_+	cd00886, MogA_MoaB, MogA_MoaB family	NA|349aa|down_4|NZ_CP051680.1_7474748_7475795_+	cd03522, MoeA_like, MoeA_like	NA|77aa|down_5|NZ_CP051680.1_7475834_7476065_+	PRK14861, tatA, twin arginine translocase protein A; Provisional	NA|259aa|down_6|NZ_CP051680.1_7476190_7476967_+	COG0805, TatC, Sec-independent protein secretion pathway component TatC [Intracellular trafficking and secretion]	NA|424aa|down_7|NZ_CP051680.1_7477128_7478400_+	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms]	NA|95aa|down_8|NZ_CP051680.1_7478640_7478925_+	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|543aa|down_9|NZ_CP051680.1_7478960_7480589_+	PRK00013, groEL, chaperonin GroEL; Reviewed
GCF_012849095.1_ASM1284909v1	NZ_CP051680	Cohnella sp. MFER-1 chromosome, complete genome	16	7770823-7770897	14	CRISPRCasFinder	no		DEDDh,csa3,WYL,DinG,cas3,RT	Orphan	CTAAGTGTAAAACCTACAACTAGTT	25	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,WYL,DinG,cas3,RT	NA|714aa|up_2|NZ_CP051680.1_7767005_7769147_+,NA|326aa|up_1|NZ_CP051680.1_7769226_7770204_+,NA	NA|191aa|up_9|NZ_CP051680.1_7758461_7759034_+	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates	NA|126aa|up_8|NZ_CP051680.1_7759244_7759622_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|344aa|up_7|NZ_CP051680.1_7759634_7760666_+	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|300aa|up_6|NZ_CP051680.1_7760669_7761569_+	cd00761, Glyco_tranf_GTA_type, Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold	NA|451aa|up_5|NZ_CP051680.1_7761577_7762930_+	cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins	NA|316aa|up_4|NZ_CP051680.1_7762931_7763879_+	COG5039, COG5039, Exopolysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|447aa|up_3|NZ_CP051680.1_7765268_7766609_+	COG1004, Ugd, Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]	NA|714aa|up_2|NZ_CP051680.1_7767005_7769147_+	NA	NA|326aa|up_1|NZ_CP051680.1_7769226_7770204_+	NA	NA|118aa|up_0|NZ_CP051680.1_7770204_7770558_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|1012aa|down_0|NZ_CP051680.1_7771131_7774167_-	pfam00395, SLH, S-layer homology domain	NA|211aa|down_1|NZ_CP051680.1_7774477_7775110_+	COG1739, COG1739, Uncharacterized conserved protein [Function unknown]	NA|134aa|down_2|NZ_CP051680.1_7775228_7775630_-	pfam01894, UPF0047, Uncharacterized protein family UPF0047	NA|272aa|down_3|NZ_CP051680.1_7775864_7776680_+	TIGR02139, permease_CysT, sulfate ABC transporter, permease protein CysT	NA|266aa|down_4|NZ_CP051680.1_7776676_7777474_+	TIGR00969, Sulfate_transport_system_permease_protein_CysT, sulfate ABC transporter, permease protein	NA|355aa|down_5|NZ_CP051680.1_7777475_7778540_+	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	NA|361aa|down_6|NZ_CP051680.1_7778581_7779664_+	cd01005, PBP2_CysP, Substrate binding domain of an active sulfate transporter, a member of the type 2 periplasmic binding fold superfamily	NA|313aa|down_7|NZ_CP051680.1_7779776_7780715_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|805aa|down_8|NZ_CP051680.1_7780936_7783351_+	pfam14498, Glyco_hyd_65N_2, Glycosyl hydrolase family 65, N-terminal domain	NA|664aa|down_9|NZ_CP051680.1_7783343_7785335_+	COG0480, FusA, Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
GCF_012849095.1_ASM1284909v1	NZ_CP051680	Cohnella sp. MFER-1 chromosome, complete genome	17	7799514-7799698	3,3	PILER-CR,CRT	no		DEDDh,csa3,WYL,DinG,cas3,RT	Orphan	GAGACGGTCATTTTGACCGT,GAGACGGTCATTTTGACCGT	20,20	0	0	NA	NA	NA:NA	3,3	3	Orphan	DEDDh,csa3,WYL,DinG,cas3,RT	NA,NA|161aa|down_8|NZ_CP051680.1_7813375_7813858_+,NA|210aa|down_9|NZ_CP051680.1_7813767_7814397_+	NA|664aa|up_9|NZ_CP051680.1_7783343_7785335_+	COG0480, FusA, Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]	NA|539aa|up_8|NZ_CP051680.1_7785424_7787041_+	cd17536, REC_YesN-like, phosphoacceptor receiver (REC) domain of YesN and related helix-turn-helix containing response regulators	NA|578aa|up_7|NZ_CP051680.1_7787037_7788771_+	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms]	NA|290aa|up_6|NZ_CP051680.1_7788968_7789838_+	COG4209, LplB, ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism]	NA|314aa|up_5|NZ_CP051680.1_7789864_7790806_+	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|518aa|up_4|NZ_CP051680.1_7790835_7792389_+	pfam12010, DUF3502, Domain of unknown function (DUF3502)	NA|1016aa|up_3|NZ_CP051680.1_7792493_7795541_+	PLN03010, PLN03010, polygalacturonase	NA|634aa|up_2|NZ_CP051680.1_7795575_7797477_+	pfam03747, ADP_ribosyl_GH, ADP-ribosylglycohydrolase	NA|268aa|up_1|NZ_CP051680.1_7797543_7798347_-	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily	NA|331aa|up_0|NZ_CP051680.1_7798469_7799462_+	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|336aa|down_0|NZ_CP051680.1_7799988_7800996_-	cd19974, PBP1_LacI-like, ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors	NA|357aa|down_1|NZ_CP051680.1_7801367_7802438_+	cd18612, GH130_Lin0857-like, Glycoside hydrolase family 130 such as Listeria innocua beta-1,2-mannobiose phosphorylase	NA|320aa|down_2|NZ_CP051680.1_7802450_7803410_+	COG4209, LplB, ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism]	NA|298aa|down_3|NZ_CP051680.1_7803433_7804327_+	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|575aa|down_4|NZ_CP051680.1_7804395_7806120_+	cd13580, PBP2_AlgQ_like_1, Periplasmic-binding component of alginate-specific ABC uptake system-like; contains the type 2 periplasmic binding fold	NA|317aa|down_5|NZ_CP051680.1_7806136_7807087_+	pfam08950, DUF1861, Protein of unknown function (DUF1861)	NA|1636aa|down_6|NZ_CP051680.1_7807128_7812036_+	pfam00395, SLH, S-layer homology domain	NA|79aa|down_7|NZ_CP051680.1_7812567_7812804_-	pfam13131, DUF3951, Protein of unknown function (DUF3951)	NA|161aa|down_8|NZ_CP051680.1_7813375_7813858_+	NA	NA|210aa|down_9|NZ_CP051680.1_7813767_7814397_+	NA
GCF_012849095.1_ASM1284909v1	NZ_CP051680	Cohnella sp. MFER-1 chromosome, complete genome	18	8327294-8327424	15	CRISPRCasFinder	no		DEDDh,csa3,WYL,DinG,cas3,RT	Orphan	AGAACAGACAAAAATGTCCGATC	23	0	0	NA	NA	NA	2	2	Orphan	DEDDh,csa3,WYL,DinG,cas3,RT	NA|68aa|up_2|NZ_CP051680.1_8325282_8325486_+,NA|63aa|up_1|NZ_CP051680.1_8325546_8325735_+,NA|70aa|down_2|NZ_CP051680.1_8329660_8329870_+,NA|137aa|down_3|NZ_CP051680.1_8330205_8330616_+,NA|220aa|down_4|NZ_CP051680.1_8330608_8331268_+,NA|82aa|down_5|NZ_CP051680.1_8331829_8332075_+,NA|100aa|down_6|NZ_CP051680.1_8332110_8332410_+,NA|112aa|down_7|NZ_CP051680.1_8332631_8332967_+,NA|126aa|down_8|NZ_CP051680.1_8333287_8333665_+	NA|1912aa|up_9|NZ_CP051680.1_8315398_8321134_+	pfam00754, F5_F8_type_C, F5/8 type C domain	NA|78aa|up_8|NZ_CP051680.1_8321327_8321561_+	pfam11007, CotJA, Spore coat associated protein JA (CotJA)	NA|124aa|up_7|NZ_CP051680.1_8321553_8321925_+	pfam12652, CotJB, CotJB protein	NA|526aa|up_6|NZ_CP051680.1_8322164_8323742_-	pfam07508, Recombinase, Recombinase	NA|228aa|up_5|NZ_CP051680.1_8323781_8324465_-	pfam06114, Peptidase_M78, IrrE N-terminal-like domain	NA|136aa|up_4|NZ_CP051680.1_8324488_8324896_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|76aa|up_3|NZ_CP051680.1_8325040_8325268_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|68aa|up_2|NZ_CP051680.1_8325282_8325486_+	NA	NA|63aa|up_1|NZ_CP051680.1_8325546_8325735_+	NA	NA|88aa|up_0|NZ_CP051680.1_8325870_8326134_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|116aa|down_0|NZ_CP051680.1_8327858_8328206_+	pfam11417, Inhibitor_G39P, Loader and inhibitor of phage G40P	NA|477aa|down_1|NZ_CP051680.1_8328207_8329638_+	TIGR00665, DnaB, replicative DNA helicase	NA|70aa|down_2|NZ_CP051680.1_8329660_8329870_+	NA	NA|137aa|down_3|NZ_CP051680.1_8330205_8330616_+	NA	NA|220aa|down_4|NZ_CP051680.1_8330608_8331268_+	NA	NA|82aa|down_5|NZ_CP051680.1_8331829_8332075_+	NA	NA|100aa|down_6|NZ_CP051680.1_8332110_8332410_+	NA	NA|112aa|down_7|NZ_CP051680.1_8332631_8332967_+	NA	NA|126aa|down_8|NZ_CP051680.1_8333287_8333665_+	NA	NA|187aa|down_9|NZ_CP051680.1_8333806_8334367_+	cd01192, INT_C_like_3, Uncharacterized site-specific tyrosine recombinase, C-terminal catalytic domain
