The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP051651	Xanthomonas campestris pv. badrii strain NEB122 chromosome, complete genome	4955824	208789	250046	4955824	transposase	Moraxella_phage(33.33%)	32	NA	NA
WP_168968412.1|208789_210094_-|transposase	IS4 family transposase	transposase	NA	NA	NA	NA
WP_168968414.1|210510_211299_-	siderophore-interacting protein	NA	NA	NA	NA	NA
WP_168968416.1|211823_212351_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_168968418.1|212546_214193_+	malonate decarboxylase subunit alpha	NA	NA	NA	NA	NA
WP_168968420.1|214201_214519_+	malonate decarboxylase acyl carrier protein	NA	NA	NA	NA	NA
WP_168968422.1|214646_215567_+	biotin-independent malonate decarboxylase subunit beta	NA	NA	NA	NA	NA
WP_168968424.1|215557_216262_+	biotin-independent malonate decarboxylase subunit gamma	NA	NA	NA	NA	NA
WP_168968426.1|216263_216905_+	malonate decarboxylase holo-[acyl-carrier-protein] synthase	NA	NA	NA	NA	NA
WP_169708049.1|217162_218050_+	triphosphoribosyl-dephospho-CoA synthase MdcB	NA	NA	NA	NA	NA
WP_168968428.1|218234_219155_+	malonate decarboxylase subunit epsilon	NA	NA	NA	NA	NA
WP_168968430.1|219242_220598_+	hypothetical protein	NA	NA	NA	NA	NA
WP_064507493.1|220677_221397_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_168968432.1|221636_222260_-	HAD hydrolase-like protein	NA	NA	NA	NA	NA
WP_168968434.1|222355_222775_-	STAS domain-containing protein	NA	NA	NA	NA	NA
WP_168968436.1|222771_223203_-	ATP-binding protein	NA	NA	NA	NA	NA
WP_169708050.1|223199_225176_-	SpoIIE family protein phosphatase	NA	NA	NA	NA	NA
WP_168968438.1|225457_226057_+	hypothetical protein	NA	NA	NA	NA	NA
WP_168968440.1|226053_227376_+	DUF2974 domain-containing protein	NA	NA	NA	NA	NA
WP_168968442.1|227785_228799_+	glycosyl hydrolase 53 family protein	NA	NA	NA	NA	NA
WP_168968444.1|230289_232977_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_168968446.1|233069_234119_+	DUF262 domain-containing protein	NA	A0A0R6PJX3	Moraxella_phage	27.0	2.2e-24
WP_168968448.1|234265_234754_+	hypothetical protein	NA	NA	NA	NA	NA
WP_168968450.1|235255_236623_+|transposase	IS5 family transposase	transposase	K4ICS3	Acidithiobacillus_phage	63.6	1.2e-81
WP_168968452.1|237862_238303_+	hypothetical protein	NA	NA	NA	NA	NA
WP_168968454.1|239023_239848_-|transposase	IS3 family transposase	transposase	NA	NA	NA	NA
WP_168968456.1|239847_240153_-	DUF1153 domain-containing protein	NA	NA	NA	NA	NA
WP_168968458.1|240745_241288_-	hypothetical protein	NA	NA	NA	NA	NA
WP_168968460.1|241474_242458_+|transposase	IS5 family transposase	transposase	A0A077K814	Ralstonia_phage	61.1	7.0e-97
WP_168968462.1|244159_244465_+	DUF1153 domain-containing protein	NA	NA	NA	NA	NA
WP_168968464.1|244464_245289_+|transposase	IS3 family transposase	transposase	NA	NA	NA	NA
WP_168968466.1|247000_247468_+	hypothetical protein	NA	NA	NA	NA	NA
WP_168968468.1|249308_250046_-|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP051651	Xanthomonas campestris pv. badrii strain NEB122 chromosome, complete genome	4955824	1869190	1895966	4955824	transposase,integrase,protease	Burkholderia_virus(50.0%)	25	1868368:1868384	1880552:1880568
1868368:1868384	attL	CTGGAACCGTTATTTCT	NA	NA	NA	NA
WP_169705936.1|1869190_1870558_-|transposase	IS5 family transposase	transposase	K4ICS3	Acidithiobacillus_phage	63.2	2.6e-81
WP_169705937.1|1871427_1872662_-|transposase	IS3 family transposase	transposase	Q8W6R2	Burkholderia_virus	73.6	5.7e-112
WP_169708124.1|1872913_1873993_-	virulence factor	NA	NA	NA	NA	NA
WP_169708125.1|1875468_1875951_-|integrase	integrase	integrase	NA	NA	NA	NA
WP_169705938.1|1876305_1876578_+	hypothetical protein	NA	NA	NA	NA	NA
WP_169705939.1|1876574_1876991_+	type I toxin-antitoxin system SymE family toxin	NA	NA	NA	NA	NA
WP_169708126.1|1877326_1877707_+	hypothetical protein	NA	NA	NA	NA	NA
WP_169705940.1|1878062_1878680_+	hypothetical protein	NA	NA	NA	NA	NA
WP_169708127.1|1878934_1879483_+	hypothetical protein	NA	NA	NA	NA	NA
WP_169708128.1|1879587_1880490_+	hypothetical protein	NA	NA	NA	NA	NA
WP_169705941.1|1880590_1881805_-|transposase	IS4 family transposase	transposase	A0A0F7LAS3	uncultured_marine_virus	32.9	5.3e-54
1880552:1880568	attR	AGAAATAACGGTTCCAG	NA	NA	NA	NA
WP_169705942.1|1882067_1882979_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_169705943.1|1883407_1884439_-	hypothetical protein	NA	NA	NA	NA	NA
WP_169705944.1|1884995_1885304_+	hypothetical protein	NA	NA	NA	NA	NA
WP_169708129.1|1885284_1885716_+	type I toxin-antitoxin system SymE family toxin	NA	NA	NA	NA	NA
WP_104581804.1|1886111_1886441_+	DUF1778 domain-containing protein	NA	NA	NA	NA	NA
WP_169705945.1|1886388_1886934_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_169705946.1|1887387_1889046_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_169705947.1|1889048_1889675_-	chemotaxis protein	NA	NA	NA	NA	NA
WP_002813536.1|1889674_1890067_-	chemotaxis protein CheY	NA	NA	NA	NA	NA
WP_104605212.1|1890090_1890858_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_005918202.1|1890854_1891739_-	MinD/ParA family protein	NA	NA	NA	NA	NA
WP_169705948.1|1891725_1893414_-	flagellar biosynthesis protein FlhF	NA	NA	NA	NA	NA
WP_169705949.1|1894355_1894667_-	hypothetical protein	NA	NA	NA	NA	NA
WP_169705950.1|1894731_1895966_-|transposase	IS3 family transposase	transposase	Q8W6R2	Burkholderia_virus	73.2	5.7e-112
>prophage 4
NZ_CP051651	Xanthomonas campestris pv. badrii strain NEB122 chromosome, complete genome	4955824	3564213	3575835	4955824		Escherichia_phage(25.0%)	10	NA	NA
WP_169707055.1|3564213_3565560_+	phosphomannomutase	NA	A0A127AWJ1	Bacillus_phage	27.0	2.2e-32
WP_169707056.1|3565606_3567010_+	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	NA	A0A1V0SH58	Hokovirus	29.6	6.5e-48
WP_169707057.1|3567310_3568477_-	nucleotide sugar dehydrogenase	NA	M1HV26	Paramecium_bursaria_Chlorella_virus	58.1	3.6e-116
WP_169707058.1|3568813_3569716_-	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	36.7	2.7e-26
WP_169707059.1|3569712_3570270_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	47.8	4.3e-43
WP_169707060.1|3570266_3571154_-	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	58.1	5.9e-95
WP_169707061.1|3571208_3572264_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	48.3	1.8e-82
WP_169707062.1|3572496_3573243_+	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_169707063.1|3573242_3574187_+	electron transfer flavoprotein subunit alpha/FixB family protein	NA	NA	NA	NA	NA
WP_169707064.1|3574731_3575835_+	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	E5ES42	Bathycoccus_sp._RCC1105_virus	33.8	1.1e-45
>prophage 5
NZ_CP051651	Xanthomonas campestris pv. badrii strain NEB122 chromosome, complete genome	4955824	3757688	3770715	4955824	plate,integrase,tail	Stenotrophomonas_phage(66.67%)	17	3746136:3746150	3778047:3778061
3746136:3746150	attL	CGCTGGTGGCATCCA	NA	NA	NA	NA
WP_169708234.1|3757688_3760082_+	response regulator	NA	A0A2K9L5I4	Tupanvirus	23.8	9.0e-05
WP_169707204.1|3761488_3761926_+	phage virion morphogenesis protein	NA	V9IQH0	Stenotrophomonas_phage	52.1	1.8e-28
WP_169707205.1|3761947_3762394_-	hypothetical protein	NA	NA	NA	NA	NA
WP_169707206.1|3762572_3763463_+|plate	baseplate assembly protein	plate	V9IQV9	Stenotrophomonas_phage	52.7	8.9e-83
WP_169707207.1|3763455_3764004_+|tail	phage tail protein I	tail	V9IQK7	Stenotrophomonas_phage	53.1	2.7e-50
WP_169707208.1|3764007_3765204_+|tail	phage tail protein	tail	A0A1S5NTG6	Burkholderia_phage	46.2	6.6e-33
WP_169707209.1|3765205_3765433_+	hypothetical protein	NA	NA	NA	NA	NA
WP_169707210.1|3765511_3766075_+|plate	phage baseplate assembly protein V	plate	Q9ZXL0	Pseudomonas_virus	47.5	6.3e-26
WP_169707211.1|3766071_3766431_+|plate	baseplate assembly protein	plate	V9IQW0	Stenotrophomonas_phage	63.6	1.1e-34
WP_169708235.1|3766892_3767111_+	hypothetical protein	NA	NA	NA	NA	NA
WP_169707212.1|3767107_3767395_+	hypothetical protein	NA	NA	NA	NA	NA
WP_169707213.1|3767394_3767667_+	hypothetical protein	NA	NA	NA	NA	NA
WP_169707214.1|3767745_3768171_+	hypothetical protein	NA	V9IQL6	Stenotrophomonas_phage	50.4	1.7e-20
WP_169707215.1|3768338_3768611_+	hypothetical protein	NA	NA	NA	NA	NA
WP_169707216.1|3768607_3768832_+	hypothetical protein	NA	NA	NA	NA	NA
WP_169707217.1|3768828_3769101_+	hypothetical protein	NA	NA	NA	NA	NA
WP_169707218.1|3769527_3770715_+|integrase	integrase	integrase	V9IQN0	Stenotrophomonas_phage	51.1	1.9e-109
3778047:3778061	attR	TGGATGCCACCAGCG	NA	NA	NA	NA
>prophage 6
NZ_CP051651	Xanthomonas campestris pv. badrii strain NEB122 chromosome, complete genome	4955824	4120321	4184076	4955824	transposase,plate	uncultured_virus(20.0%)	39	NA	NA
WP_168968412.1|4120321_4121626_+|transposase	IS4 family transposase	transposase	NA	NA	NA	NA
WP_169707480.1|4121760_4122477_+	hypothetical protein	NA	NA	NA	NA	NA
WP_169707481.1|4122473_4123049_+	hypothetical protein	NA	NA	NA	NA	NA
WP_104622223.1|4123320_4123677_-	nucleotidyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_169707482.1|4123663_4124128_-	nucleotidyltransferase	NA	NA	NA	NA	NA
WP_169707483.1|4124124_4124901_-	hypothetical protein	NA	NA	NA	NA	NA
WP_169707484.1|4124905_4126174_-	MFS transporter	NA	NA	NA	NA	NA
WP_169707485.1|4126160_4126844_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_169707486.1|4126831_4128040_-	hypothetical protein	NA	NA	NA	NA	NA
WP_169707487.1|4128026_4128878_-	hypothetical protein	NA	NA	NA	NA	NA
WP_169707488.1|4128882_4129722_-	DUF692 domain-containing protein	NA	NA	NA	NA	NA
WP_169707489.1|4132196_4133096_+	oxygen-dependent coproporphyrinogen oxidase	NA	NA	NA	NA	NA
WP_169707490.1|4133746_4136527_-	DNA polymerase I	NA	A0A218MKQ4	uncultured_virus	30.3	2.8e-66
WP_169707491.1|4136604_4136895_+	DUF2782 domain-containing protein	NA	NA	NA	NA	NA
WP_169707492.1|4137077_4138121_-	type VI secretion system protein TssA	NA	NA	NA	NA	NA
WP_169707493.1|4138171_4146859_-	filamentous hemagglutinin N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_169707494.1|4146870_4148553_-	ShlB/FhaC/HecB family hemolysin secretion/activation protein	NA	NA	NA	NA	NA
WP_169707495.1|4148983_4152688_-	protein kinase	NA	Q0N495	Clanis_bilineata_nucleopolyhedrovirus	27.9	4.6e-08
WP_169707496.1|4152692_4153409_-	serine/threonine-protein phosphatase	NA	NA	NA	NA	NA
WP_169707497.1|4153405_4153981_-	type VI secretion system-associated protein TagF	NA	NA	NA	NA	NA
WP_169707498.1|4153977_4157505_-	type VI secretion system membrane subunit TssM	NA	NA	NA	NA	NA
WP_169707499.1|4157501_4158752_-	OmpA family protein	NA	NA	NA	NA	NA
WP_169707500.1|4158756_4160091_-|plate	type VI secretion system baseplate subunit TssK	plate	NA	NA	NA	NA
WP_169707501.1|4160598_4161972_-	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA	NA
WP_169707502.1|4162604_4163153_-	hypothetical protein	NA	NA	NA	NA	NA
WP_169707503.1|4163149_4165114_-	type VI secretion system tip protein VgrG	NA	A0A077K8Q4	Ralstonia_phage	28.1	3.9e-38
WP_169707504.1|4165264_4166596_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_029218002.1|4166823_4167111_-	PAAR domain-containing protein	NA	NA	NA	NA	NA
WP_169708247.1|4167181_4169713_-	serine/threonine protein kinase	NA	A0A2R8FF19	Brazilian_cedratvirus	28.5	1.8e-11
WP_064508453.1|4169691_4170231_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_169707505.1|4170567_4171290_-	ThuA domain-containing protein	NA	NA	NA	NA	NA
WP_169707506.1|4171459_4172071_-	hypothetical protein	NA	NA	NA	NA	NA
WP_169707507.1|4173479_4174172_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_169707508.1|4174332_4174638_+	hypothetical protein	NA	NA	NA	NA	NA
WP_169707509.1|4176844_4177825_-	hypothetical protein	NA	NA	NA	NA	NA
WP_169707510.1|4177870_4180627_-	type VI secretion system ATPase TssH	NA	H6X3M6	Enterobacteria_phage	29.0	2.0e-80
WP_169707511.1|4180683_4181724_-|plate	type VI secretion system baseplate subunit TssG	plate	NA	NA	NA	NA
WP_169708248.1|4181687_4183571_-|plate	type VI secretion system baseplate subunit TssF	plate	NA	NA	NA	NA
WP_169707512.1|4183572_4184076_-|plate	type VI secretion system baseplate subunit TssE	plate	NA	NA	NA	NA
>prophage 7
NZ_CP051651	Xanthomonas campestris pv. badrii strain NEB122 chromosome, complete genome	4955824	4394586	4464229	4955824	transposase,tRNA,protease,tail	Bacillus_phage(20.0%)	51	NA	NA
WP_168968245.1|4394586_4395954_+|transposase	IS5 family transposase	transposase	K4ICS3	Acidithiobacillus_phage	63.6	1.2e-81
WP_169707654.1|4396087_4396420_+	hypothetical protein	NA	NA	NA	NA	NA
WP_169707655.1|4397025_4397280_+	antitoxin	NA	NA	NA	NA	NA
WP_169707656.1|4397619_4397910_-	HigA family addiction module antidote protein	NA	M9MUN2	Rhodococcus_phage	53.8	8.8e-16
WP_169707657.1|4397927_4398209_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A222YWE2	Escherichia_phage	41.2	7.7e-09
WP_169707658.1|4398348_4400709_-	AAA family ATPase	NA	A0A0N9S864	Staphylococcus_phage	43.6	1.0e-08
WP_169707659.1|4400705_4404803_-	UvrD-helicase domain-containing protein	NA	S5MMD7	Bacillus_phage	21.3	1.8e-08
WP_169707660.1|4404799_4408204_-	exodeoxyribonuclease V subunit gamma	NA	NA	NA	NA	NA
WP_169708261.1|4408424_4413710_-	autotransporter domain-containing protein	NA	A0A142KBU8	Gordonia_phage	52.9	6.4e-11
WP_169707661.1|4414000_4414552_+|tail	phage tail protein	tail	A0A0U4JQ24	Arthrobacter_phage	34.5	3.9e-12
WP_169707662.1|4414619_4415147_+|tail	phage tail protein	tail	A0A2R4A082	Microbacterium_phage	31.8	1.6e-10
WP_169707663.1|4415207_4415744_+|tail	phage tail protein	tail	NA	NA	NA	NA
WP_169707664.1|4415747_4416302_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_169707665.1|4416466_4416754_-	hypothetical protein	NA	NA	NA	NA	NA
WP_169707666.1|4417133_4417928_+	ATP-binding cassette domain-containing protein	NA	W8CYL7	Bacillus_phage	28.5	5.8e-09
WP_039441429.1|4417927_4418677_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_169707667.1|4418685_4419219_+	outer membrane lipid asymmetry maintenance protein MlaD	NA	NA	NA	NA	NA
WP_169707668.1|4419215_4419878_+	organic solvent ABC transporter	NA	NA	NA	NA	NA
WP_169707669.1|4419867_4420161_+	STAS domain-containing protein	NA	NA	NA	NA	NA
WP_169707670.1|4420171_4421236_+	VacJ family lipoprotein	NA	NA	NA	NA	NA
WP_169707671.1|4421438_4421717_-	hypothetical protein	NA	NA	NA	NA	NA
WP_169707672.1|4421736_4422288_-	glutathione peroxidase	NA	Q70H87	Fowlpox_virus	33.9	2.2e-15
WP_169707673.1|4422400_4422877_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_169707674.1|4422873_4424262_+	MATE family efflux transporter	NA	NA	NA	NA	NA
WP_169707675.1|4424653_4425067_-	hypothetical protein	NA	NA	NA	NA	NA
WP_169707676.1|4425506_4427087_-	DNA recombination protein RmuC	NA	NA	NA	NA	NA
WP_169707677.1|4427480_4427861_+	hypothetical protein	NA	NA	NA	NA	NA
WP_169707678.1|4428079_4429495_+	amino acid permease	NA	NA	NA	NA	NA
WP_169707679.1|4429754_4432232_-	glycoside hydrolase family 92 protein	NA	NA	NA	NA	NA
WP_169707680.1|4432578_4434090_-	hypothetical protein	NA	NA	NA	NA	NA
WP_169707681.1|4434541_4436290_-	diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	31.6	2.2e-13
WP_169707682.1|4436533_4437694_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	40.2	8.4e-41
WP_169707683.1|4438023_4438455_+	hypothetical protein	NA	NA	NA	NA	NA
WP_169707684.1|4438451_4440917_+	hypothetical protein	NA	NA	NA	NA	NA
WP_169707685.1|4441205_4442471_-	dipeptidase	NA	NA	NA	NA	NA
WP_169708262.1|4442650_4442971_-	hypothetical protein	NA	NA	NA	NA	NA
WP_169707686.1|4443092_4444262_-	class I SAM-dependent rRNA methyltransferase	NA	NA	NA	NA	NA
WP_169707687.1|4444524_4445481_+	TerC family protein	NA	K4F9T9	Cronobacter_phage	31.4	2.2e-31
WP_169707688.1|4445709_4446495_+|protease	rhomboid family intramembrane serine protease	protease	NA	NA	NA	NA
WP_169707689.1|4446718_4447819_-	glycerophosphodiester phosphodiesterase	NA	NA	NA	NA	NA
WP_169707690.1|4448059_4450375_-	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_169707691.1|4450571_4451429_+	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_169707692.1|4451576_4452917_-|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	tRNA	NA	NA	NA	NA
WP_169707693.1|4453373_4455095_-	membrane protein insertase YidC	NA	NA	NA	NA	NA
WP_169708263.1|4455120_4455558_-	ribonuclease P protein component	NA	NA	NA	NA	NA
WP_002805908.1|4455596_4455737_-	50S ribosomal protein L34	NA	NA	NA	NA	NA
WP_169707694.1|4455977_4457309_+	chromosomal replication initiator protein DnaA	NA	NA	NA	NA	NA
WP_169707695.1|4457584_4458685_+	DNA polymerase III subunit beta	NA	A0A0A8IL17	Aurantimonas_phage	37.6	2.8e-54
WP_169708264.1|4459661_4460768_+	DNA replication/repair protein RecF	NA	NA	NA	NA	NA
WP_169707696.1|4460880_4463325_+	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	34.8	3.2e-114
WP_169707697.1|4463392_4464229_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
