assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_012647025.1_ASM1264702v1	NZ_CP051467	Stenotrophomonas maltophilia strain NEB515 chromosome, complete genome	1	413837-413921	1	CRISPRCasFinder	no		csa3,cas3,WYL,DEDDh,DinG,Cas9_archaeal	Orphan	GGGGAATGCCGGCCAGCGGCCGGCACTAC	29	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,WYL,DEDDh,DinG,Cas9_archaeal	NA|133aa|up_9|NZ_CP051467.1_401165_401564_-,NA	NA|133aa|up_9|NZ_CP051467.1_401165_401564_-	NA	NA|680aa|up_8|NZ_CP051467.1_401658_403698_-	pfam04632, FUSC, Fusaric acid resistance protein family	NA|490aa|up_7|NZ_CP051467.1_403701_405171_-	TIGR01845, Outer_membrane_protein_OprM, efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family	NA|306aa|up_6|NZ_CP051467.1_405167_406085_-	PRK10559, PRK10559, p-hydroxybenzoic acid efflux pump subunit AaeA	NA|70aa|up_5|NZ_CP051467.1_406081_406291_-	pfam07869, DUF1656, Protein of unknown function (DUF1656)	NA|152aa|up_4|NZ_CP051467.1_406401_406857_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|204aa|up_3|NZ_CP051467.1_407543_408155_+	PRK09347, folE, GTP cyclohydrolase I; Provisional	NA|490aa|up_2|NZ_CP051467.1_408267_409737_+	pfam11855, DUF3375, Protein of unknown function (DUF3375)	NA|234aa|up_1|NZ_CP051467.1_409723_410425_+	pfam13835, DUF4194, Domain of unknown function (DUF4194)	NA|1127aa|up_0|NZ_CP051467.1_410441_413822_+	COG4913, COG4913, Uncharacterized protein conserved in bacteria [Function unknown]	NA|260aa|down_0|NZ_CP051467.1_413974_414754_-	PRK10621, PRK10621, hypothetical protein; Provisional	NA|131aa|down_1|NZ_CP051467.1_414856_415249_+	PRK04233, PRK04233, hypothetical protein; Provisional	NA|427aa|down_2|NZ_CP051467.1_415252_416533_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|424aa|down_3|NZ_CP051467.1_416683_417955_+	TIGR03440, egtB_TIGR03440, ergothioneine biosynthesis protein EgtB	NA|325aa|down_4|NZ_CP051467.1_417951_418926_+	TIGR03438, conserved_hypothetical_protein, dimethylhistidine N-methyltransferase	NA|423aa|down_5|NZ_CP051467.1_419010_420279_+	pfam13406, SLT_2, Transglycosylase SLT domain	NA|289aa|down_6|NZ_CP051467.1_420319_421186_+	cd09020, D-hex-6-P-epi_like, D-hexose-6-phosphate epimerase-like	NA|258aa|down_7|NZ_CP051467.1_421236_422010_+	pfam14237, DUF4339, Domain of unknown function (DUF4339)	NA|396aa|down_8|NZ_CP051467.1_422016_423204_-	pfam03594, BenE, Benzoate membrane transport protein	NA|285aa|down_9|NZ_CP051467.1_437553_438408_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
GCF_012647025.1_ASM1264702v1	NZ_CP051467	Stenotrophomonas maltophilia strain NEB515 chromosome, complete genome	2	463913-464016	2	CRISPRCasFinder	no		csa3,cas3,WYL,DEDDh,DinG,Cas9_archaeal	Orphan	GTAGTGCCGGCCGCTGGCCGGCAACCAC	28	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,WYL,DEDDh,DinG,Cas9_archaeal	NA|304aa|up_9|NZ_CP051467.1_442062_442974_-,NA	NA|304aa|up_9|NZ_CP051467.1_442062_442974_-	NA	NA|249aa|up_8|NZ_CP051467.1_443024_443771_-	PRK09065, PRK09065, glutamine amidotransferase; Provisional	NA|612aa|up_7|NZ_CP051467.1_443742_445578_-	COG2804, PulE, Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]	NA|304aa|up_6|NZ_CP051467.1_445661_446573_+	PRK09348, glyQ, glycyl-tRNA synthetase subunit alpha; Validated	NA|692aa|up_5|NZ_CP051467.1_446660_448736_+	PRK01233, glyS, glycyl-tRNA synthetase subunit beta; Validated	NA|599aa|up_4|NZ_CP051467.1_448992_450789_+	COG0729, COG0729, Outer membrane protein [Cell envelope biogenesis, outer membrane]	NA|1286aa|up_3|NZ_CP051467.1_450785_454643_+	COG2911, COG2911, Uncharacterized protein conserved in bacteria [Function unknown]	NA|538aa|up_2|NZ_CP051467.1_454662_456276_-	pfam00226, DnaJ, DnaJ domain	NA|563aa|up_1|NZ_CP051467.1_456272_457961_-	cd10235, HscC_like_NBD, Nucleotide-binding domain of Escherichia coli HscC and similar proteins	NA|716aa|up_0|NZ_CP051467.1_458088_460236_+	pfam10459, Peptidase_S46, Peptidase S46	NA|192aa|down_0|NZ_CP051467.1_464038_464614_-	COG1971, COG1971, Predicted membrane protein [Function unknown]	NA|222aa|down_1|NZ_CP051467.1_465024_465690_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|648aa|down_2|NZ_CP051467.1_465769_467713_-	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional	NA|476aa|down_3|NZ_CP051467.1_467958_469386_+	pfam16331, TolA_bind_tri, TolA binding protein trimerisation	NA|554aa|down_4|NZ_CP051467.1_469514_471176_+	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily	NA|470aa|down_5|NZ_CP051467.1_471389_472799_+	cd07133, ALDH_CALDH_CalB, Coniferyl aldehyde dehydrogenase-like	NA|256aa|down_6|NZ_CP051467.1_472930_473698_+	cd09086, ExoIII-like_AP-endo, Escherichia coli exonuclease III (ExoIII) and Neisseria meningitides NExo-like subfamily of the ExoIII family purinic/apyrimidinic (AP) endonucleases	NA|84aa|down_7|NZ_CP051467.1_473770_474022_-	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|200aa|down_8|NZ_CP051467.1_474106_474706_+	COG2091, Sfp, Phosphopantetheinyl transferase [Coenzyme metabolism]	NA|213aa|down_9|NZ_CP051467.1_474745_475384_+	PRK00107, gidB, 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG
GCF_012647025.1_ASM1264702v1	NZ_CP051467	Stenotrophomonas maltophilia strain NEB515 chromosome, complete genome	3	1082951-1083051	3	CRISPRCasFinder	no		csa3,cas3,WYL,DEDDh,DinG,Cas9_archaeal	Orphan	ACCCTCAGCCCCTCGCTTACAGCGAGC	27	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,WYL,DEDDh,DinG,Cas9_archaeal	NA,NA|412aa|down_5|NZ_CP051467.1_1089766_1091002_+	NA|313aa|up_9|NZ_CP051467.1_1069417_1070356_-	cd01942, ribokinase_group_A, Ribokinase-like subgroup A	NA|349aa|up_8|NZ_CP051467.1_1070639_1071686_+	PRK13927, PRK13927, rod shape-determining protein MreB; Provisional	NA|422aa|up_7|NZ_CP051467.1_1071807_1073073_+	PRK13922, PRK13922, rod shape-determining protein MreC; Provisional	NA|162aa|up_6|NZ_CP051467.1_1073069_1073555_+	COG2891, MreD, Cell shape-determining protein [Cell envelope biogenesis, outer membrane]	NA|692aa|up_5|NZ_CP051467.1_1073558_1075634_+	TIGR03423, pbp2_mrdA, penicillin-binding protein 2	NA|371aa|up_4|NZ_CP051467.1_1075630_1076743_+	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA	NA|365aa|up_3|NZ_CP051467.1_1076879_1077974_+	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA	NA|382aa|up_2|NZ_CP051467.1_1078963_1080109_+	TIGR02282, Membrane-bound_lytic_murein_transglycosylase_B, lytic murein transglycosylase B	NA|423aa|up_1|NZ_CP051467.1_1080105_1081374_+	COG0797, RlpA, Lipoproteins [Cell envelope biogenesis, outer membrane]	NA|406aa|up_0|NZ_CP051467.1_1081474_1082692_+	COG1686, DacC, D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane]	NA|93aa|down_0|NZ_CP051467.1_1084450_1084729_+	PRK00907, PRK00907, hypothetical protein; Provisional	NA|237aa|down_1|NZ_CP051467.1_1084716_1085427_+	PRK14342, PRK14342, lipoyl(octanoyl) transferase LipB	NA|337aa|down_2|NZ_CP051467.1_1085444_1086455_+	PRK05481, PRK05481, lipoyl synthase; Provisional	NA|726aa|down_3|NZ_CP051467.1_1086734_1088912_+	PRK11186, PRK11186, carboxy terminal-processing peptidase	NA|197aa|down_4|NZ_CP051467.1_1089158_1089749_+	pfam10001, DUF2242, Uncharacterized protein conserved in bacteria (DUF2242)	NA|412aa|down_5|NZ_CP051467.1_1089766_1091002_+	NA	NA|302aa|down_6|NZ_CP051467.1_1091012_1091918_+	PRK09599, PRK09599, NADP-dependent phosphogluconate dehydrogenase	NA|348aa|down_7|NZ_CP051467.1_1092207_1093251_-	PRK11579, PRK11579, putative oxidoreductase; Provisional	NA|128aa|down_8|NZ_CP051467.1_1093421_1093805_+	COG2823, OsmY, Predicted periplasmic or secreted lipoprotein [General function prediction only]	NA|606aa|down_9|NZ_CP051467.1_1094039_1095857_+	COG4251, COG4251, Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]
GCF_012647025.1_ASM1264702v1	NZ_CP051467	Stenotrophomonas maltophilia strain NEB515 chromosome, complete genome	4	1086478-1086582	4	CRISPRCasFinder	no		csa3,cas3,WYL,DEDDh,DinG,Cas9_archaeal	Orphan	GGTGGGTGCGGACCGTTGGTCCGCACGC	28	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,WYL,DEDDh,DinG,Cas9_archaeal	NA,NA|412aa|down_2|NZ_CP051467.1_1089766_1091002_+,NA|46aa|down_9|NZ_CP051467.1_1098067_1098205_-	NA|692aa|up_9|NZ_CP051467.1_1073558_1075634_+	TIGR03423, pbp2_mrdA, penicillin-binding protein 2	NA|371aa|up_8|NZ_CP051467.1_1075630_1076743_+	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA	NA|365aa|up_7|NZ_CP051467.1_1076879_1077974_+	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA	NA|382aa|up_6|NZ_CP051467.1_1078963_1080109_+	TIGR02282, Membrane-bound_lytic_murein_transglycosylase_B, lytic murein transglycosylase B	NA|423aa|up_5|NZ_CP051467.1_1080105_1081374_+	COG0797, RlpA, Lipoproteins [Cell envelope biogenesis, outer membrane]	NA|406aa|up_4|NZ_CP051467.1_1081474_1082692_+	COG1686, DacC, D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane]	NA|353aa|up_3|NZ_CP051467.1_1083040_1084099_-	pfam09982, DUF2219, Uncharacterized protein conserved in bacteria (DUF2219)	NA|93aa|up_2|NZ_CP051467.1_1084450_1084729_+	PRK00907, PRK00907, hypothetical protein; Provisional	NA|237aa|up_1|NZ_CP051467.1_1084716_1085427_+	PRK14342, PRK14342, lipoyl(octanoyl) transferase LipB	NA|337aa|up_0|NZ_CP051467.1_1085444_1086455_+	PRK05481, PRK05481, lipoyl synthase; Provisional	NA|726aa|down_0|NZ_CP051467.1_1086734_1088912_+	PRK11186, PRK11186, carboxy terminal-processing peptidase	NA|197aa|down_1|NZ_CP051467.1_1089158_1089749_+	pfam10001, DUF2242, Uncharacterized protein conserved in bacteria (DUF2242)	NA|412aa|down_2|NZ_CP051467.1_1089766_1091002_+	NA	NA|302aa|down_3|NZ_CP051467.1_1091012_1091918_+	PRK09599, PRK09599, NADP-dependent phosphogluconate dehydrogenase	NA|348aa|down_4|NZ_CP051467.1_1092207_1093251_-	PRK11579, PRK11579, putative oxidoreductase; Provisional	NA|128aa|down_5|NZ_CP051467.1_1093421_1093805_+	COG2823, OsmY, Predicted periplasmic or secreted lipoprotein [General function prediction only]	NA|606aa|down_6|NZ_CP051467.1_1094039_1095857_+	COG4251, COG4251, Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]	NA|147aa|down_7|NZ_CP051467.1_1095853_1096294_+	cd17557, REC_Rcp-like, phosphoacceptor receiver (REC) domain of cyanobacterial phytochrome response regulator Rcp and similar domains	NA|504aa|down_8|NZ_CP051467.1_1096298_1097810_+	PRK13837, PRK13837, two-component system VirA-like sensor kinase	NA|46aa|down_9|NZ_CP051467.1_1098067_1098205_-	NA
GCF_012647025.1_ASM1264702v1	NZ_CP051467	Stenotrophomonas maltophilia strain NEB515 chromosome, complete genome	5	1118528-1118661	5	CRISPRCasFinder	no		csa3,cas3,WYL,DEDDh,DinG,Cas9_archaeal	Orphan	CCGCTCTGGTGGGTGTCGACCTTGGTCG	28	0	0	NA	NA	NA	2	2	Orphan	csa3,cas3,WYL,DEDDh,DinG,Cas9_archaeal	NA,NA|145aa|down_0|NZ_CP051467.1_1118714_1119149_-,NA|145aa|down_8|NZ_CP051467.1_1128694_1129129_-	NA|131aa|up_9|NZ_CP051467.1_1102312_1102705_+	COG5652, COG5652, Predicted integral membrane protein [Function unknown]	NA|786aa|up_8|NZ_CP051467.1_1102810_1105168_-	cd06563, GH20_chitobiase-like, The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin	NA|903aa|up_7|NZ_CP051467.1_1105279_1107988_-	TIGR01782, TonB-dependent_receptor, TonB-dependent receptor	NA|340aa|up_6|NZ_CP051467.1_1108131_1109151_-	PRK12408, PRK12408, glucokinase; Provisional	NA|430aa|up_5|NZ_CP051467.1_1109528_1110818_+	cd17394, MFS_FucP_like, Fucose permease and similar proteins of the Major Facilitator Superfamily of transporters	NA|356aa|up_4|NZ_CP051467.1_1110857_1111925_+	cd01545, PBP1_SalR, ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators	NA|343aa|up_3|NZ_CP051467.1_1111932_1112961_+	COG2222, AgaS, Predicted phosphosugar isomerases [Cell envelope biogenesis, outer membrane]	NA|383aa|up_2|NZ_CP051467.1_1112960_1114109_+	COG1820, NagA, N-acetylglucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism]	NA|356aa|up_1|NZ_CP051467.1_1114108_1115176_+	COG4299, COG4299, Uncharacterized protein conserved in bacteria [Function unknown]	NA|1010aa|up_0|NZ_CP051467.1_1115475_1118505_+	cd01344, PL2_Passenger_AT, Pertactin-like passenger domains (virulence factors), C-terminal, subgroup 2, of autotransporter proteins of the type V secretion system of Gram-negative bacteria	NA|145aa|down_0|NZ_CP051467.1_1118714_1119149_-	NA	NA|346aa|down_1|NZ_CP051467.1_1119560_1120598_+	pfam03572, Peptidase_S41, Peptidase family S41	NA|112aa|down_2|NZ_CP051467.1_1120601_1120937_+	pfam08566, Pam17, Mitochondrial import protein Pam17	NA|145aa|down_3|NZ_CP051467.1_1120986_1121421_+	pfam07179, SseB, SseB protein N-terminal domain	NA|407aa|down_4|NZ_CP051467.1_1121500_1122721_-	PRK10885, cca, multifunctional CCA addition/repair protein	NA|662aa|down_5|NZ_CP051467.1_1122925_1124911_-	PRK11619, PRK11619, lytic murein transglycosylase; Provisional	NA|137aa|down_6|NZ_CP051467.1_1125107_1125518_+	COG0848, ExbD, Biopolymer transport protein [Intracellular trafficking and secretion]	NA|954aa|down_7|NZ_CP051467.1_1125788_1128650_+	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|145aa|down_8|NZ_CP051467.1_1128694_1129129_-	NA	NA|720aa|down_9|NZ_CP051467.1_1129329_1131489_-	PRK10003, PRK10003, ferric-rhodotorulic acid outer membrane transporter; Provisional
GCF_012647025.1_ASM1264702v1	NZ_CP051467	Stenotrophomonas maltophilia strain NEB515 chromosome, complete genome	6	1389679-1389782	6	CRISPRCasFinder	no		csa3,cas3,WYL,DEDDh,DinG,Cas9_archaeal	Orphan	TGGATGCGCTTTGGTAGTGCCGGCCGCTGGCCGGCAA	37	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,WYL,DEDDh,DinG,Cas9_archaeal	NA|385aa|up_7|NZ_CP051467.1_1382892_1384047_+,NA|159aa|up_4|NZ_CP051467.1_1385739_1386216_+,NA|157aa|up_3|NZ_CP051467.1_1386305_1386776_+,NA|129aa|up_0|NZ_CP051467.1_1389277_1389664_+,NA	NA|618aa|up_9|NZ_CP051467.1_1380060_1381914_+	cd01847, Triacylglycerol_lipase_like, Triacylglycerol lipase-like subfamily of the SGNH hydrolases, a diverse family of lipases and esterases	NA|135aa|up_8|NZ_CP051467.1_1382413_1382818_+	pfam05656, DUF805, Protein of unknown function (DUF805)	NA|385aa|up_7|NZ_CP051467.1_1382892_1384047_+	NA	NA|146aa|up_6|NZ_CP051467.1_1384047_1384485_-	COG0824, FcbC, Predicted thioesterase [General function prediction only]	NA|293aa|up_5|NZ_CP051467.1_1384614_1385493_+	PRK10446, PRK10446, 30S ribosomal protein S6--L-glutamate ligase	NA|159aa|up_4|NZ_CP051467.1_1385739_1386216_+	NA	NA|157aa|up_3|NZ_CP051467.1_1386305_1386776_+	NA	NA|226aa|up_2|NZ_CP051467.1_1386784_1387462_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|457aa|up_1|NZ_CP051467.1_1387424_1388795_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|129aa|up_0|NZ_CP051467.1_1389277_1389664_+	NA	NA|204aa|down_0|NZ_CP051467.1_1389789_1390401_-	PRK00081, coaE, dephospho-CoA kinase; Reviewed	NA|288aa|down_1|NZ_CP051467.1_1390412_1391276_-	COG1989, PulO, Type II secretory pathway, prepilin signal peptidase PulO and related peptidases [Cell motility and secretion / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]	NA|420aa|down_2|NZ_CP051467.1_1391283_1392543_-	COG1459, PulF, Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion]	NA|141aa|down_3|NZ_CP051467.1_1392895_1393318_+	COG4969, PilA, Tfp pilus assembly protein, major pilin PilA [Cell motility and secretion / Intracellular trafficking and secretion]	NA|136aa|down_4|NZ_CP051467.1_1393470_1393878_+	COG4969, PilA, Tfp pilus assembly protein, major pilin PilA [Cell motility and secretion / Intracellular trafficking and secretion]	NA|578aa|down_5|NZ_CP051467.1_1394100_1395834_+	TIGR02538, Type_IV_pilus_assembly_protein_PilF, type IV-A pilus assembly ATPase PilB	NA|458aa|down_6|NZ_CP051467.1_1395959_1397333_-	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]	NA|538aa|down_7|NZ_CP051467.1_1397393_1399007_-	PRK11360, PRK11360, two-component system sensor histidine kinase AtoS	NA|390aa|down_8|NZ_CP051467.1_1399364_1400534_+	PRK00696, sucC, ADP-forming succinate--CoA ligase subunit beta	NA|292aa|down_9|NZ_CP051467.1_1400555_1401431_+	PRK05678, PRK05678, succinyl-CoA synthetase subunit alpha; Validated
GCF_012647025.1_ASM1264702v1	NZ_CP051467	Stenotrophomonas maltophilia strain NEB515 chromosome, complete genome	7	2098946-2099045	7	CRISPRCasFinder	no	csa3,DEDDh	csa3,cas3,WYL,DEDDh,DinG,Cas9_archaeal	Type I-A	GCCCACCAAGGTGGGCATCTACC	23	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,WYL,DEDDh,DinG,Cas9_archaeal	NA|98aa|up_6|NZ_CP051467.1_2086151_2086445_+,NA|105aa|down_8|NZ_CP051467.1_2106565_2106880_-,NA|100aa|down_9|NZ_CP051467.1_2106887_2107187_-	csa3|310aa|up_9|NZ_CP051467.1_2082679_2083609_-	pfam08241, Methyltransf_11, Methyltransferase domain	NA|383aa|up_8|NZ_CP051467.1_2083762_2084911_+	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases	NA|306aa|up_7|NZ_CP051467.1_2084956_2085874_-	PRK15188, PRK15188, fimbrial chaperone protein BcfB; Provisional	NA|98aa|up_6|NZ_CP051467.1_2086151_2086445_+	NA	NA|1058aa|up_5|NZ_CP051467.1_2086598_2089772_-	TIGR00915, Probable_aminoglycoside_efflux_pump, The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family	NA|423aa|up_4|NZ_CP051467.1_2089787_2091056_-	PRK09578, PRK09578, MexX/AxyX family multidrug efflux RND transporter periplasmic adaptor subunit	NA|219aa|up_3|NZ_CP051467.1_2091055_2091712_-	pfam14246, TetR_C_7, AefR-like transcriptional repressor, C-terminal region	NA|1659aa|up_2|NZ_CP051467.1_2091962_2096939_+	pfam05088, Bac_GDH, Bacterial NAD-glutamate dehydrogenase	NA|258aa|up_1|NZ_CP051467.1_2097129_2097903_+	PRK04761, ppnK, inorganic polyphosphate/ATP-NAD kinase; Reviewed	NA|315aa|up_0|NZ_CP051467.1_2097950_2098895_+	pfam06189, 5-nucleotidase, 5'-nucleotidase	NA|184aa|down_0|NZ_CP051467.1_2099075_2099627_-	pfam11159, DUF2939, Protein of unknown function (DUF2939)	NA|229aa|down_1|NZ_CP051467.1_2099682_2100369_-	TIGR02453, conserved_hypothetical_protein, TIGR02453 family protein	DEDDh|480aa|down_2|NZ_CP051467.1_2100365_2101805_-	PRK11779, sbcB, exonuclease I; Provisional	NA|456aa|down_3|NZ_CP051467.1_2101804_2103172_-	COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]	NA|425aa|down_4|NZ_CP051467.1_2103203_2104478_-	TIGR01814, kynureninase, kynureninase	NA|174aa|down_5|NZ_CP051467.1_2104640_2105162_-	PRK13264, PRK13264, 3-hydroxyanthranilate 3,4-dioxygenase; Provisional	NA|221aa|down_6|NZ_CP051467.1_2105182_2105845_-	cd00883, beta_CA_cladeA, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site	NA|213aa|down_7|NZ_CP051467.1_2105919_2106558_-	pfam04299, FMN_bind_2, Putative FMN-binding domain	NA|105aa|down_8|NZ_CP051467.1_2106565_2106880_-	NA	NA|100aa|down_9|NZ_CP051467.1_2106887_2107187_-	NA
GCF_012647025.1_ASM1264702v1	NZ_CP051467	Stenotrophomonas maltophilia strain NEB515 chromosome, complete genome	8	2532040-2532296	1	PILER-CR	no		csa3,cas3,WYL,DEDDh,DinG,Cas9_archaeal	Orphan	TGCGTGGCCCACGTAAGGATGGGTAGAGCCGGCCGCTGGCCGGCTGCCGGGTCC	54	0	0	NA	NA	NA	2	2	Orphan	csa3,cas3,WYL,DEDDh,DinG,Cas9_archaeal	NA,NA|249aa|down_6|NZ_CP051467.1_2536465_2537212_+	NA|248aa|up_9|NZ_CP051467.1_2522545_2523289_-	cd05362, THN_reductase-like_SDR_c, tetrahydroxynaphthalene/trihydroxynaphthalene reductase-like, classical (c) SDRs	NA|314aa|up_8|NZ_CP051467.1_2523395_2524337_+	cd08472, PBP2_CrgA_like_3, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold	NA|456aa|up_7|NZ_CP051467.1_2524473_2525841_-	TIGR01386, Probable_sensor_protein_PcoS, heavy metal sensor kinase	NA|233aa|up_6|NZ_CP051467.1_2525837_2526536_-	TIGR01387, Transcriptional_regulatory_protein_PcoR, heavy metal response regulator	NA|295aa|up_5|NZ_CP051467.1_2526581_2527466_-	COG1276, PcoD, Putative copper export protein [Inorganic ion transport and metabolism]	NA|126aa|up_4|NZ_CP051467.1_2527476_2527854_-	pfam04234, CopC, CopC domain	NA|108aa|up_3|NZ_CP051467.1_2527980_2528304_-	COG3479, COG3479, Phenolic acid decarboxylase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|313aa|up_2|NZ_CP051467.1_2528300_2529239_-	pfam04199, Cyclase, Putative cyclase	NA|316aa|up_1|NZ_CP051467.1_2529258_2530206_-	TIGR03571, lucif_BA3436, luciferase-type oxidoreductase, BA3436 family	NA|268aa|up_0|NZ_CP051467.1_2530217_2531021_-	PRK11172, dkgB, 2,5-didehydrogluconate reductase DkgB	NA|159aa|down_0|NZ_CP051467.1_2532321_2532798_-	pfam03203, MerC, MerC mercury resistance protein	NA|178aa|down_1|NZ_CP051467.1_2532830_2533364_+	pfam10986, DUF2796, Protein of unknown function (DUF2796)	NA|232aa|down_2|NZ_CP051467.1_2533360_2534056_+	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|418aa|down_3|NZ_CP051467.1_2534048_2535302_+	COG0577, SalY, ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]	NA|184aa|down_4|NZ_CP051467.1_2535304_2535856_+	pfam11736, DUF3299, Protein of unknown function (DUF3299)	NA|207aa|down_5|NZ_CP051467.1_2535845_2536466_+	pfam11736, DUF3299, Protein of unknown function (DUF3299)	NA|249aa|down_6|NZ_CP051467.1_2536465_2537212_+	NA	NA|511aa|down_7|NZ_CP051467.1_2537364_2538897_+	PRK14995, PRK14995, SmvA family efflux MFS transporter	NA|186aa|down_8|NZ_CP051467.1_2538901_2539459_+	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|299aa|down_9|NZ_CP051467.1_2540134_2541031_-	pfam12852, Cupin_6, Cupin
GCF_012647025.1_ASM1264702v1	NZ_CP051467	Stenotrophomonas maltophilia strain NEB515 chromosome, complete genome	9	2884450-2884556	8	CRISPRCasFinder	no		csa3,cas3,WYL,DEDDh,DinG,Cas9_archaeal	Orphan	GGTAGATCCACGCCATGCGTGGAT	24	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,WYL,DEDDh,DinG,Cas9_archaeal	NA|128aa|up_9|NZ_CP051467.1_2875183_2875567_+,NA|157aa|up_5|NZ_CP051467.1_2879458_2879929_+,NA|72aa|up_0|NZ_CP051467.1_2883594_2883810_+,NA|113aa|down_4|NZ_CP051467.1_2893085_2893424_-	NA|128aa|up_9|NZ_CP051467.1_2875183_2875567_+	NA	NA|762aa|up_8|NZ_CP051467.1_2875645_2877931_-	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|271aa|up_7|NZ_CP051467.1_2878069_2878882_+	COG3570, StrB, Streptomycin 6-kinase [Defense mechanisms]	NA|109aa|up_6|NZ_CP051467.1_2879019_2879346_-	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|157aa|up_5|NZ_CP051467.1_2879458_2879929_+	NA	NA|154aa|up_4|NZ_CP051467.1_2879930_2880392_+	cd03675, Nudix_Hydrolase_2, Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function	NA|381aa|up_3|NZ_CP051467.1_2880388_2881531_+	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed	NA|205aa|up_2|NZ_CP051467.1_2881527_2882142_+	PRK00218, PRK00218, lysogenization regulator HflD	NA|397aa|up_1|NZ_CP051467.1_2882305_2883496_+	cd11386, MCP_signal, Methyl-accepting chemotaxis protein (MCP), signaling domain	NA|72aa|up_0|NZ_CP051467.1_2883594_2883810_+	NA	NA|920aa|down_0|NZ_CP051467.1_2884596_2887356_-	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase	NA|701aa|down_1|NZ_CP051467.1_2887487_2889590_+	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|591aa|down_2|NZ_CP051467.1_2889594_2891367_+	cd01948, EAL, EAL domain	NA|406aa|down_3|NZ_CP051467.1_2891776_2892994_-	cd16943, HATPase_AtoS-like, Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Escherichia coli K-12 AtoS	NA|113aa|down_4|NZ_CP051467.1_2893085_2893424_-	NA	NA|102aa|down_5|NZ_CP051467.1_2893420_2893726_-	TIGR03824, FlgM_jcvi, flagellar biosynthesis anti-sigma factor FlgM	NA|219aa|down_6|NZ_CP051467.1_2893801_2894458_-	PRK12617, flgA, flagellar basal body P-ring formation protein FlgA	NA|315aa|down_7|NZ_CP051467.1_2894724_2895669_+	cd19924, REC_CheV-like, phosphoacceptor receiver (REC) domain of chemotaxis protein CheV and similar proteins	NA|132aa|down_8|NZ_CP051467.1_2895806_2896202_+	PRK12620, flgB, flagellar basal body rod protein FlgB; Provisional	NA|136aa|down_9|NZ_CP051467.1_2896205_2896613_+	PRK12629, flgC, flagellar basal body rod protein FlgC; Provisional
GCF_012647025.1_ASM1264702v1	NZ_CP051467	Stenotrophomonas maltophilia strain NEB515 chromosome, complete genome	10	4400024-4400123	9	CRISPRCasFinder	no		csa3,cas3,WYL,DEDDh,DinG,Cas9_archaeal	Orphan	AGATCCACGCCATGCGTGGATGA	23	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,WYL,DEDDh,DinG,Cas9_archaeal	NA|309aa|up_5|NZ_CP051467.1_4392070_4392997_-,NA|144aa|down_1|NZ_CP051467.1_4402430_4402862_+	NA|238aa|up_9|NZ_CP051467.1_4387281_4387995_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|215aa|up_8|NZ_CP051467.1_4388082_4388727_-	cd01822, Lysophospholipase_L1_like, Lysophospholipase L1-like subgroup of SGNH-hydrolases	NA|216aa|up_7|NZ_CP051467.1_4388802_4389450_+	COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|839aa|up_6|NZ_CP051467.1_4389446_4391963_+	COG3127, COG3127, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|309aa|up_5|NZ_CP051467.1_4392070_4392997_-	NA	NA|200aa|up_4|NZ_CP051467.1_4393070_4393670_-	COG3720, HemS, Putative heme degradation protein [Inorganic ion transport and metabolism]	NA|736aa|up_3|NZ_CP051467.1_4393674_4395882_-	TIGR01786, hemoglobin-haptoglobin-binding_protein, TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein	NA|65aa|up_2|NZ_CP051467.1_4396071_4396266_-	pfam10636, hemP, Hemin uptake protein hemP	NA|324aa|up_1|NZ_CP051467.1_4396570_4397542_-	cd19143, AKR_AKR6C1_2, AKR6C family of aldo-keto reductase (AKR)	NA|433aa|up_0|NZ_CP051467.1_4397735_4399034_+	COG1972, NupC, Nucleoside permease [Nucleotide transport and metabolism]	NA|306aa|down_0|NZ_CP051467.1_4401403_4402321_+	cd08475, PBP2_CrgA_like_6, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold	NA|144aa|down_1|NZ_CP051467.1_4402430_4402862_+	NA	NA|332aa|down_2|NZ_CP051467.1_4403009_4404005_+	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|276aa|down_3|NZ_CP051467.1_4404062_4404890_+	PRK08317, PRK08317, hypothetical protein; Provisional	NA|617aa|down_4|NZ_CP051467.1_4405027_4406878_+	pfam10131, PTPS_related, 6-pyruvoyl-tetrahydropterin synthase related domain; membrane protein	NA|337aa|down_5|NZ_CP051467.1_4406874_4407885_+	cd04179, DPM_DPG-synthase_like, DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily	NA|353aa|down_6|NZ_CP051467.1_4407943_4409002_-	pfam04307, YdjM, LexA-binding, inner membrane-associated putative hydrolase	NA|267aa|down_7|NZ_CP051467.1_4409152_4409953_-	cd07398, MPP_YbbF-LpxH, Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain	NA|572aa|down_8|NZ_CP051467.1_4409949_4411665_-	cd07986, LPLAT_ACT14924-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown ACT14924	NA|404aa|down_9|NZ_CP051467.1_4411990_4413202_+	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated
GCF_012647025.1_ASM1264702v1	NZ_CP051467	Stenotrophomonas maltophilia strain NEB515 chromosome, complete genome	11	4616329-4616431	10	CRISPRCasFinder	no		csa3,cas3,WYL,DEDDh,DinG,Cas9_archaeal	Orphan	GTGCCGACCAACGGTCGGCACCCACC	26	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,WYL,DEDDh,DinG,Cas9_archaeal	NA,NA|88aa|down_3|NZ_CP051467.1_4619038_4619302_+	NA|193aa|up_9|NZ_CP051467.1_4605679_4606258_-	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)	NA|614aa|up_8|NZ_CP051467.1_4606739_4608581_+	TIGR01779, Vitamin_B12_transporter_BtuB, TonB-dependent vitamin B12 receptor	NA|219aa|up_7|NZ_CP051467.1_4608681_4609338_-	PRK13222, PRK13222, N-acetylmuramic acid 6-phosphate phosphatase MupP	NA|264aa|up_6|NZ_CP051467.1_4609403_4610195_-	pfam08241, Methyltransf_11, Methyltransferase domain	NA|310aa|up_5|NZ_CP051467.1_4610191_4611121_-	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain	NA|213aa|up_4|NZ_CP051467.1_4611229_4611868_+	COG2910, COG2910, Putative NADH-flavin reductase [General function prediction only]	NA|304aa|up_3|NZ_CP051467.1_4612006_4612918_+	cd07739, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|365aa|up_2|NZ_CP051467.1_4613310_4614405_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|172aa|up_1|NZ_CP051467.1_4614595_4615111_+	PRK05174, PRK05174, bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase	NA|403aa|up_0|NZ_CP051467.1_4615110_4616319_+	PRK07967, PRK07967, beta-ketoacyl-ACP synthase I	NA|228aa|down_0|NZ_CP051467.1_4616433_4617117_-	COG0637, COG0637, Predicted phosphatase/phosphohexomutase [General function prediction only]	NA|234aa|down_1|NZ_CP051467.1_4617113_4617815_-	cd02553, PseudoU_synth_RsuA, Pseudouridine synthase, Escherichia coli RsuA like	NA|357aa|down_2|NZ_CP051467.1_4617811_4618882_-	COG2813, RsmC, 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]	NA|88aa|down_3|NZ_CP051467.1_4619038_4619302_+	NA	NA|97aa|down_4|NZ_CP051467.1_4619384_4619675_-	pfam11607, DUF3247, Protein of unknown function (DUF3247)	NA|663aa|down_5|NZ_CP051467.1_4619718_4621707_-	PRK11091, PRK11091, aerobic respiration control sensor protein ArcB; Provisional	NA|188aa|down_6|NZ_CP051467.1_4621951_4622515_+	pfam11454, DUF3016, Protein of unknown function (DUF3016)	NA|356aa|down_7|NZ_CP051467.1_4622701_4623769_-	cd06827, PLPDE_III_AR_proteobact, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Proteobacterial Alanine Racemases	NA|435aa|down_8|NZ_CP051467.1_4623747_4625052_-	PRK00711, PRK00711, D-amino acid dehydrogenase	NA|160aa|down_9|NZ_CP051467.1_4625201_4625681_+	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp
