assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_012594215.1_ASM1259421v1	NZ_CP051005	Enterococcus faecalis strain TH4125 chromosome, complete genome	1	559455-560020	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas9,cas1,cas2,csn2	WYL,csa3,cas3,cas9,cas1,cas2,csn2,cas14j,DinG,DEDDh	Type II-A,Type II-B,Type II-C	GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC,GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC,GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC	36,36,36	0	0	NA	NA	II-A,II-B:II-A,II-B:II-A,II-B	8,8,4	8	TypeII-A,TypeII-B,TypeII-C	WYL,csa3,cas3,cas9,cas1,cas2,csn2,cas14j,DinG,DEDDh	NA|78aa|up_4|NZ_CP051005.1_552788_553022_+,NA	NA|191aa|up_9|NZ_CP051005.1_546234_546807_+	COG0400, COG0400, Predicted esterase [General function prediction only]	NA|517aa|up_8|NZ_CP051005.1_546873_548424_-	PRK14022, PRK14022, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase	NA|550aa|up_7|NZ_CP051005.1_548603_550253_+	cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins	NA|258aa|up_6|NZ_CP051005.1_550322_551096_+	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis]	NA|472aa|up_5|NZ_CP051005.1_551229_552645_+	TIGR01886, Beta-Ala-Xaa_dipeptidase, dipeptidase PepV	NA|78aa|up_4|NZ_CP051005.1_552788_553022_+	NA	cas9|1338aa|up_3|NZ_CP051005.1_553494_557508_+	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	cas1|289aa|up_2|NZ_CP051005.1_557508_558375_+	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas2|110aa|up_1|NZ_CP051005.1_558371_558701_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	csn2|220aa|up_0|NZ_CP051005.1_558701_559361_+	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	NA|338aa|down_0|NZ_CP051005.1_560837_561851_-	COG3594, NolL, Fucose 4-O-acetylase and related acetyltransferases [Carbohydrate transport and metabolism]	NA|318aa|down_1|NZ_CP051005.1_562086_563040_+	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	NA|506aa|down_2|NZ_CP051005.1_563040_564558_+	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold	NA|152aa|down_3|NZ_CP051005.1_564699_565155_+	COG1438, ArgR, Arginine repressor [Transcription]	NA|507aa|down_4|NZ_CP051005.1_565188_566709_+	PLN02371, PLN02371, phosphoglucosamine mutase family protein	NA|185aa|down_5|NZ_CP051005.1_566719_567274_+	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]	NA|288aa|down_6|NZ_CP051005.1_567397_568261_-	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	NA|729aa|down_7|NZ_CP051005.1_568602_570789_+	TIGR02074, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein, 1A family	NA|114aa|down_8|NZ_CP051005.1_570851_571193_+	PRK13676, PRK13676, YlbF/YmcA family competence regulator	NA|412aa|down_9|NZ_CP051005.1_571348_572584_+	cd00840, MPP_Mre11_N, Mre11 nuclease, N-terminal metallophosphatase domain
GCF_012594215.1_ASM1259421v1	NZ_CP051005	Enterococcus faecalis strain TH4125 chromosome, complete genome	2	1883756-1884451	2,2,2	CRISPRCasFinder,CRT,PILER-CR	no		WYL,csa3,cas3,cas9,cas1,cas2,csn2,cas14j,DinG,DEDDh	Orphan	GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC,GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC,GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC	36,36,36	0	0	NA	NA	II-A,II-B:II-A,II-B:II-A,II-B	10,10,9	10	Orphan	WYL,csa3,cas3,cas9,cas1,cas2,csn2,cas14j,DinG,DEDDh	NA,NA	NA|250aa|up_9|NZ_CP051005.1_1869656_1870406_-	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	NA|234aa|up_8|NZ_CP051005.1_1870523_1871225_-	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|808aa|up_7|NZ_CP051005.1_1871355_1873779_-	COG1674, FtsK, DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning]	NA|404aa|up_6|NZ_CP051005.1_1874092_1875304_-	COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]	NA|302aa|up_5|NZ_CP051005.1_1875332_1876238_-	PRK06080, PRK06080, 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated	NA|327aa|up_4|NZ_CP051005.1_1876359_1877340_+	COG0142, IspA, Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]	NA|589aa|up_3|NZ_CP051005.1_1877419_1879186_-	COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]	NA|578aa|up_2|NZ_CP051005.1_1879182_1880916_-	TIGR02857, transport_ATP-binding_protein, thiol reductant ABC exporter, CydD subunit	NA|338aa|up_1|NZ_CP051005.1_1880920_1881934_-	pfam02322, Cyt_bd_oxida_II, Cytochrome bd terminal oxidase subunit II	NA|473aa|up_0|NZ_CP051005.1_1881930_1883349_-	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I	NA|288aa|down_0|NZ_CP051005.1_1884608_1885472_-	smart00871, AraC_E_bind, Bacterial transcription activator, effector binding domain	NA|694aa|down_1|NZ_CP051005.1_1885556_1887638_-	PRK07726, PRK07726, DNA topoisomerase 3	NA|122aa|down_2|NZ_CP051005.1_1887768_1888134_-	pfam06279, DUF1033, Protein of unknown function (DUF1033)	NA|190aa|down_3|NZ_CP051005.1_1888231_1888801_-	pfam13305, WHG, WHG domain	NA|172aa|down_4|NZ_CP051005.1_1888933_1889449_+	cd00865, PEBP_bact_arch, PhosphatidylEthanolamine-Binding Protein (PEBP) domain present in bacteria and archaea	NA|413aa|down_5|NZ_CP051005.1_1889465_1890704_+	cd17391, MFS_MdtG_MDR_like, Multidrug resistance protein MdtG and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|375aa|down_6|NZ_CP051005.1_1890883_1892008_-	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed	NA|115aa|down_7|NZ_CP051005.1_1892233_1892578_-	pfam08866, DUF1831, Putative amino acid metabolism	NA|382aa|down_8|NZ_CP051005.1_1892645_1893791_-	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]	NA|325aa|down_9|NZ_CP051005.1_1893947_1894922_-	PRK02458, PRK02458, ribose-phosphate pyrophosphokinase; Provisional
GCF_012594215.1_ASM1259421v1	NZ_CP051005	Enterococcus faecalis strain TH4125 chromosome, complete genome	3	1903957-1904067	3	CRISPRCasFinder	no		WYL,csa3,cas3,cas9,cas1,cas2,csn2,cas14j,DinG,DEDDh	Orphan	TTCGTGTAAATGACACAACTTGCCCTTCG	29	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,cas3,cas9,cas1,cas2,csn2,cas14j,DinG,DEDDh	NA,NA|60aa|down_1|NZ_CP051005.1_1906638_1906818_+,NA|322aa|down_2|NZ_CP051005.1_1906905_1907871_-,NA|97aa|down_3|NZ_CP051005.1_1908046_1908337_-	NA|382aa|up_9|NZ_CP051005.1_1892645_1893791_-	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]	NA|325aa|up_8|NZ_CP051005.1_1893947_1894922_-	PRK02458, PRK02458, ribose-phosphate pyrophosphokinase; Provisional	NA|250aa|up_7|NZ_CP051005.1_1895134_1895884_+	COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]	NA|290aa|up_6|NZ_CP051005.1_1895880_1896750_+	COG1108, ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components [Inorganic ion transport and metabolism]	NA|309aa|up_5|NZ_CP051005.1_1896736_1897663_+	cd01137, PsaA, Metal binding protein PsaA	NA|513aa|up_4|NZ_CP051005.1_1897717_1899256_-	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|398aa|up_3|NZ_CP051005.1_1899625_1900819_-	cd08019, M20_Acy1-like, M20 Peptidase aminoacylase 1 subfamily	NA|278aa|up_2|NZ_CP051005.1_1900833_1901667_-	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|227aa|up_1|NZ_CP051005.1_1901686_1902367_-	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|357aa|up_0|NZ_CP051005.1_1902385_1903456_-	PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional	NA|497aa|down_0|NZ_CP051005.1_1904934_1906425_+	pfam14264, Glucos_trans_II, Glucosyl transferase GtrII	NA|60aa|down_1|NZ_CP051005.1_1906638_1906818_+	NA	NA|322aa|down_2|NZ_CP051005.1_1906905_1907871_-	NA	NA|97aa|down_3|NZ_CP051005.1_1908046_1908337_-	NA	NA|427aa|down_4|NZ_CP051005.1_1908384_1909665_-	pfam02388, FemAB, FemAB family	NA|603aa|down_5|NZ_CP051005.1_1909933_1911742_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|278aa|down_6|NZ_CP051005.1_1912184_1913018_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|569aa|down_7|NZ_CP051005.1_1913014_1914721_-	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system	NA|184aa|down_8|NZ_CP051005.1_1914821_1915373_-	PRK13661, PRK13661, ECF-type riboflavin transporter substrate-binding protein	NA|452aa|down_9|NZ_CP051005.1_1915602_1916958_-	PRK14316, glmM, phosphoglucosamine mutase; Provisional
GCF_012594215.1_ASM1259421v1	NZ_CP051005	Enterococcus faecalis strain TH4125 chromosome, complete genome	4	2795945-2796018	4	CRISPRCasFinder	no		WYL,csa3,cas3,cas9,cas1,cas2,csn2,cas14j,DinG,DEDDh	Orphan	ATAGTTGGCGAGCAACAGAAAAAC	24	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,cas3,cas9,cas1,cas2,csn2,cas14j,DinG,DEDDh	NA|71aa|up_9|NZ_CP051005.1_2784724_2784937_-,NA	NA|71aa|up_9|NZ_CP051005.1_2784724_2784937_-	NA	NA|289aa|up_8|NZ_CP051005.1_2785061_2785928_-	COG1426, COG1426, Predicted transcriptional regulator contains Xre-like HTH domain [Function unknown]	NA|435aa|up_7|NZ_CP051005.1_2786095_2787400_-	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only]	NA|423aa|up_6|NZ_CP051005.1_2787392_2788661_-	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only]	NA|150aa|up_5|NZ_CP051005.1_2788869_2789319_+	pfam01741, MscL, Large-conductance mechanosensitive channel, MscL	NA|236aa|up_4|NZ_CP051005.1_2789359_2790067_-	pfam13731, WxL, WxL domain surface cell wall-binding	NA|227aa|up_3|NZ_CP051005.1_2790162_2790843_-	pfam13731, WxL, WxL domain surface cell wall-binding	NA|238aa|up_2|NZ_CP051005.1_2791238_2791952_-	TIGR02404, Trehalose_operon_transcriptional_repressor, trehalose operon repressor, B	NA|915aa|up_1|NZ_CP051005.1_2792212_2794957_+	COG1554, ATH1, Trehalose and maltose hydrolases (possible phosphorylases) [Carbohydrate transport and metabolism]	NA|217aa|up_0|NZ_CP051005.1_2794971_2795622_+	TIGR01990, bPGM, beta-phosphoglucomutase	NA|324aa|down_0|NZ_CP051005.1_2797423_2798395_-	PRK01259, PRK01259, ribose-phosphate diphosphokinase	NA|146aa|down_1|NZ_CP051005.1_2798569_2799007_-	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB	NA|185aa|down_2|NZ_CP051005.1_2799139_2799694_-	cd00555, Maf, Nucleotide binding protein Maf	NA|711aa|down_3|NZ_CP051005.1_2799718_2801851_-	COG0323, MutL, DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]	NA|859aa|down_4|NZ_CP051005.1_2801882_2804459_-	PRK05399, PRK05399, DNA mismatch repair protein MutS; Provisional	NA|124aa|down_5|NZ_CP051005.1_2804459_2804831_-	COG4550, COG4550, Predicted membrane protein [Function unknown]	NA|266aa|down_6|NZ_CP051005.1_2804918_2805716_-	pfam13277, YmdB, YmdB-like protein	NA|519aa|down_7|NZ_CP051005.1_2805875_2807432_-	PRK12704, PRK12704, phosphodiesterase; Provisional	NA|349aa|down_8|NZ_CP051005.1_2807828_2808875_-	PRK09354, recA, recombinase A; Provisional	NA|415aa|down_9|NZ_CP051005.1_2808988_2810233_-	PRK00549, PRK00549, competence damage-inducible protein A; Provisional
