assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_012593885.1_ASM1259388v1	NZ_CP051004	Streptococcus agalactiae 515 chromosome, complete genome	1	879598-880425	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas9,cas1,cas2,csn2	cas3,DinG,cas9,cas1,cas2,csn2,csm6,DEDDh,csa3	Type II-A,Type II-B,Type II-C	GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC,GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC,GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	36,36,36	0	0	NA	NA	II-A:II-A:II-A	8,12,12	12	TypeII-A,TypeII-B,TypeII-C	cas3,DinG,cas9,cas1,cas2,csn2,csm6,DEDDh,csa3	NA,NA|87aa|down_0|NZ_CP051004.1_880477_880738_+,NA|48aa|down_1|NZ_CP051004.1_880745_880889_+	NA|124aa|up_9|NZ_CP051004.1_868957_869329_+	pfam08349, DUF1722, Protein of unknown function (DUF1722)	NA|127aa|up_8|NZ_CP051004.1_869353_869734_+	TIGR02328, TIGR02328, conserved hypothetical protein	NA|377aa|up_7|NZ_CP051004.1_869825_870956_+	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|246aa|up_6|NZ_CP051004.1_870959_871697_+	pfam01643, Acyl-ACP_TE, Acyl-ACP thioesterase	NA|257aa|up_5|NZ_CP051004.1_871697_872468_+	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase	NA|219aa|up_4|NZ_CP051004.1_872457_873114_+	COG4478, COG4478, Predicted membrane protein [Function unknown]	cas9|1378aa|up_3|NZ_CP051004.1_873502_877636_+	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	cas1|290aa|up_2|NZ_CP051004.1_877637_878507_+	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas2|114aa|up_1|NZ_CP051004.1_878503_878845_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	csn2|222aa|up_0|NZ_CP051004.1_878831_879497_+	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	NA|87aa|down_0|NZ_CP051004.1_880477_880738_+	NA	NA|48aa|down_1|NZ_CP051004.1_880745_880889_+	NA	NA|139aa|down_2|NZ_CP051004.1_881047_881464_+	PRK00668, ndk, mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated	NA|611aa|down_3|NZ_CP051004.1_881599_883432_+	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|878aa|down_4|NZ_CP051004.1_883677_886311_+	NF033189, internalin_A, class 1 internalin InlA	NA|220aa|down_5|NZ_CP051004.1_886410_887070_+	COG1418, COG1418, Predicted HD superfamily hydrolase [General function prediction only]	NA|155aa|down_6|NZ_CP051004.1_887078_887543_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|145aa|down_7|NZ_CP051004.1_887542_887977_+	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB	NA|931aa|down_8|NZ_CP051004.1_888128_890921_+	COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and metabolism]	NA|368aa|down_9|NZ_CP051004.1_890920_892024_+	pfam11187, DUF2974, Protein of unknown function (DUF2974)
GCF_012593885.1_ASM1259388v1	NZ_CP051004	Streptococcus agalactiae 515 chromosome, complete genome	2	1370271-1371836	2	CRT	no		cas3,DinG,cas9,cas1,cas2,csn2,csm6,DEDDh,csa3	Orphan	NGANGCGCTNGTACTNGC	18	0	0	NA	NA	NA	29	29	Orphan	cas3,DinG,cas9,cas1,cas2,csn2,csm6,DEDDh,csa3	NA,NA|117aa|down_5|NZ_CP051004.1_1381994_1382345_+,NA|53aa|down_6|NZ_CP051004.1_1382436_1382595_-	NA|331aa|up_9|NZ_CP051004.1_1357522_1358515_-	TIGR03711, acc_sec_asp3, accessory Sec system protein Asp3	NA|520aa|up_8|NZ_CP051004.1_1358511_1360071_-	TIGR03712, acc_sec_asp2, accessory Sec system protein Asp2	NA|515aa|up_7|NZ_CP051004.1_1360077_1361622_-	pfam16993, Asp1, Accessory Sec system protein Asp1	NA|410aa|up_6|NZ_CP051004.1_1361621_1362851_-	PRK12417, secY, preprotein translocase subunit SecY; Reviewed	NA|399aa|up_5|NZ_CP051004.1_1362974_1364171_-	TIGR03728, glyco_access_1, glycosyltransferase, SP_1767 family	NA|292aa|up_4|NZ_CP051004.1_1364231_1365107_-	pfam00535, Glycos_transf_2, Glycosyl transferase family 2	NA|395aa|up_3|NZ_CP051004.1_1365099_1366284_-	cd04194, GT8_A4GalT_like, A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface	NA|414aa|up_2|NZ_CP051004.1_1366273_1367515_-	cd04194, GT8_A4GalT_like, A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface	NA|402aa|up_1|NZ_CP051004.1_1367511_1368717_-	cd04194, GT8_A4GalT_like, A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface	NA|336aa|up_0|NZ_CP051004.1_1368725_1369733_-	PRK09814, PRK09814, sugar transferase	NA|499aa|down_0|NZ_CP051004.1_1374174_1375671_+	pfam08270, PRD_Mga, M protein trans-acting positive regulator (MGA) PRD domain	NA|664aa|down_1|NZ_CP051004.1_1375767_1377759_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|307aa|down_2|NZ_CP051004.1_1377819_1378740_-	pfam02517, Abi, CAAX protease self-immunity	NA|728aa|down_3|NZ_CP051004.1_1378922_1381106_+	cd13619, PBP2_GlnP, Glutamine-binding domain of ABC transporter, a member of the type 2 periplasmic binding fold protein superfamily	NA|247aa|down_4|NZ_CP051004.1_1381105_1381846_+	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|117aa|down_5|NZ_CP051004.1_1381994_1382345_+	NA	NA|53aa|down_6|NZ_CP051004.1_1382436_1382595_-	NA	NA|438aa|down_7|NZ_CP051004.1_1382620_1383934_-	PRK12297, obgE, GTPase CgtA; Reviewed	NA|43aa|down_8|NZ_CP051004.1_1383994_1384123_-	pfam13253, DUF4044, Protein of unknown function (DUF4044)	NA|414aa|down_9|NZ_CP051004.1_1384300_1385542_+	pfam02073, Peptidase_M29, Thermophilic metalloprotease (M29)
GCF_012593885.1_ASM1259388v1	NZ_CP051004	Streptococcus agalactiae 515 chromosome, complete genome	3	1915823-1916272	3	CRT	no		cas3,DinG,cas9,cas1,cas2,csn2,csm6,DEDDh,csa3	Orphan	GGTTTAGCNTCTGGNTTA	18	3	4	1915841-1915870|1915889-1915906|1915889-1915906|1916237-1916254	NZ_CP051004.1_1915817-1915846|NZ_CP051004.1_1915817-1915834|NZ_CP051004.1_1916588-1916605|NZ_CP051004.1_1916588-1916605	NA	9	9	Orphan	cas3,DinG,cas9,cas1,cas2,csn2,csm6,DEDDh,csa3	NA|203aa|up_6|NZ_CP051004.1_1906452_1907061_+,NA	NA|1571aa|up_9|NZ_CP051004.1_1899343_1904056_+	cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 family domain in Streptococcal C5a peptidases	NA|229aa|up_8|NZ_CP051004.1_1904288_1904975_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|463aa|up_7|NZ_CP051004.1_1904971_1906360_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|203aa|up_6|NZ_CP051004.1_1906452_1907061_+	NA	NA|834aa|up_5|NZ_CP051004.1_1907147_1909649_-	PRK00390, leuS, leucyl-tRNA synthetase; Validated	NA|416aa|up_4|NZ_CP051004.1_1910025_1911273_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|282aa|up_3|NZ_CP051004.1_1911315_1912161_-	cd07208, Pat_hypo_Ecoli_yjju_like, Hypothetical patatin similar to yjju protein of Escherichia coli	NA|399aa|up_2|NZ_CP051004.1_1912365_1913562_+	cd04194, GT8_A4GalT_like, A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface	NA|402aa|up_1|NZ_CP051004.1_1913626_1914832_+	cd04194, GT8_A4GalT_like, A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface	NA|180aa|up_0|NZ_CP051004.1_1914878_1915418_-	PRK05609, nusG, transcription antitermination protein NusG; Validated	NA|59aa|down_0|NZ_CP051004.1_1918119_1918296_-	COG0690, SecE, Preprotein translocase subunit SecE [Intracellular trafficking and secretion]	NA|51aa|down_1|NZ_CP051004.1_1918328_1918481_-	PRK00504, rpmG, 50S ribosomal protein L33; Validated	NA|774aa|down_2|NZ_CP051004.1_1918529_1920851_-	COG0744, MrcB, Membrane carboxypeptidase (penicillin-binding protein) [Cell envelope biogenesis, outer membrane]	NA|295aa|down_3|NZ_CP051004.1_1920894_1921779_+	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	NA|547aa|down_4|NZ_CP051004.1_1921803_1923444_-	COG4640, COG4640, Predicted membrane protein [Function unknown]	NA|404aa|down_5|NZ_CP051004.1_1923613_1924825_-	PRK05362, PRK05362, phosphopentomutase; Provisional	NA|224aa|down_6|NZ_CP051004.1_1924891_1925563_-	PRK00507, PRK00507, deoxyribose-phosphate aldolase; Provisional	NA|401aa|down_7|NZ_CP051004.1_1925592_1926795_-	COG1972, NupC, Nucleoside permease [Nucleotide transport and metabolism]	NA|260aa|down_8|NZ_CP051004.1_1926815_1927595_-	cd17767, UP_EcUdp-like, uridine phosphorylases similar to Escherichia coli Udp and related phosphorylases	NA|246aa|down_9|NZ_CP051004.1_1927752_1928490_+	COG2188, PhnF, Transcriptional regulators [Transcription]
