The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP040881	Bacillus sp. HNA3 chromosome, complete genome	3929648	647413	655769	3929648		Synechococcus_phage(57.14%)	8	NA	NA
WP_032872546.1|647413_648706_+	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	27.3	7.7e-19
WP_032872544.1|648781_649501_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0E3G7P8	Synechococcus_phage	44.7	2.6e-48
WP_003155758.1|649500_649755_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	M4QPE7	Synechococcus_phage	33.3	4.7e-05
WP_015388591.1|649751_650435_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
WP_032872542.1|650418_652647_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	40.5	1.6e-157
WP_032872540.1|652622_654053_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	32.7	3.7e-54
WP_003155753.1|654144_655185_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	A0A0E3F760	Synechococcus_phage	41.1	2.4e-63
WP_003155752.1|655181_655769_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	39.3	1.0e-26
>prophage 2
NZ_CP040881	Bacillus sp. HNA3 chromosome, complete genome	3929648	1209067	1240919	3929648	portal,tail,plate,holin,terminase	Bacillus_phage(30.0%)	41	NA	NA
WP_087920760.1|1209067_1210204_+	tetratricopeptide repeat protein	NA	A0A1P8CWN8	Bacillus_phage	47.9	1.3e-94
WP_003154881.1|1210193_1210328_+	PhrA family phosphatase inhibitor	NA	NA	NA	NA	NA
WP_032874566.1|1210470_1211424_+	LysM peptidoglycan-binding domain-containing protein	NA	A0A218KC88	Bacillus_phage	69.3	1.1e-62
WP_007610770.1|1211460_1211838_-	PH domain-containing protein	NA	A5GYQ0	Lactococcus_phage	41.4	1.5e-15
WP_032874569.1|1211947_1212553_+	poly-gamma-glutamate hydrolase family protein	NA	A0A0Y0AJU6	Bacillus_phage	47.8	5.1e-42
WP_007610775.1|1212692_1213283_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4JA43	uncultured_Caudovirales_phage	51.7	3.0e-39
WP_003154871.1|1213431_1213770_-	helix-turn-helix transcriptional regulator	NA	A0A2H4J6F9	uncultured_Caudovirales_phage	45.8	8.4e-18
WP_029325864.1|1213960_1214140_+	hypothetical protein	NA	NA	NA	NA	NA
WP_032874571.1|1214129_1214957_+|portal	phage portal protein	portal	S6BFM4	Thermus_phage	49.0	1.7e-19
WP_032874573.1|1214856_1215657_+	ATP-binding protein	NA	A6XMI1	Bacillus_virus	49.8	4.7e-59
WP_003154863.1|1215656_1215824_+	hypothetical protein	NA	NA	NA	NA	NA
WP_032874575.1|1215921_1216263_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003154859.1|1216252_1216456_+	hypothetical protein	NA	A0A2H4J4M6	uncultured_Caudovirales_phage	48.5	5.4e-12
WP_032874577.1|1216562_1217075_+	sigma-70 family RNA polymerase sigma factor	NA	A0A0K2CNQ1	Brevibacillus_phage	44.6	2.2e-22
WP_032874579.1|1217187_1217985_+|terminase	terminase	terminase	A0A0S2MVB6	Bacillus_phage	49.8	6.1e-59
WP_087920794.1|1219327_1220719_+|portal	phage portal protein	portal	A0A1B1P7C8	Bacillus_phage	55.8	1.8e-138
WP_007407275.1|1220738_1221584_+|portal	phage portal protein	portal	A0A1B1P7E4	Bacillus_phage	58.1	2.5e-55
WP_007407274.1|1221610_1222546_+|portal	phage portal protein	portal	A0A1B1P7E3	Bacillus_phage	62.8	3.3e-104
WP_032874585.1|1222562_1222946_+	DUF3199 family protein	NA	NA	NA	NA	NA
WP_007610806.1|1222942_1223299_+	DUF3599 family protein	NA	NA	NA	NA	NA
WP_032874587.1|1223295_1223799_+	HK97 gp10 family phage protein	NA	A0A249XXA4	Clostridium_phage	41.7	5.4e-37
WP_032874589.1|1223795_1224242_+	hypothetical protein	NA	NA	NA	NA	NA
WP_007610810.1|1224446_1225844_+|portal	phage portal protein	portal	A0A0A7RTT5	Clostridium_phage	40.4	9.0e-82
WP_003154837.1|1225845_1226289_+|tail	phage tail tube protein	tail	A0A0K2CNG3	Brevibacillus_phage	45.2	8.4e-26
WP_032874591.1|1226364_1226811_+|portal	phage portal protein	portal	A0A0A7RTY8	Clostridium_phage	35.8	1.0e-10
WP_015239684.1|1226852_1227005_+	hypothetical protein	NA	NA	NA	NA	NA
WP_032874593.1|1226992_1232098_+	transglycosylase SLT domain-containing protein	NA	A0A1L2JY60	Aeribacillus_phage	46.6	2.0e-41
WP_007610816.1|1232090_1232750_+	LysM peptidoglycan-binding domain-containing protein	NA	G3MBQ1	Bacillus_virus	45.3	1.8e-08
WP_032874595.1|1232763_1233741_+	hypothetical protein	NA	A0A1L6BY20	Clostridium_phage	30.6	4.9e-34
WP_007610818.1|1233740_1234007_+	DUF2577 family protein	NA	S6C459	Thermus_phage	38.6	1.2e-06
WP_032874597.1|1234110_1234536_+	DUF2634 domain-containing protein	NA	A0A0A7RTU4	Clostridium_phage	34.7	5.6e-11
WP_007610819.1|1234528_1235575_+|plate	baseplate J/gp47 family protein	plate	S6AVU3	Thermus_phage	43.8	2.3e-69
WP_032874599.1|1235558_1236137_+	YmfQ family protein	NA	A0A0A7RTT8	Clostridium_phage	30.6	5.3e-12
WP_015239690.1|1236133_1236406_+	hypothetical protein	NA	NA	NA	NA	NA
WP_032874601.1|1236408_1238031_+	hypothetical protein	NA	A0A1P8CWR7	Bacillus_phage	40.2	1.3e-42
WP_032874603.1|1238043_1238415_+	YomQ/XkdW protein, phage-like element PBSX	NA	NA	NA	NA	NA
WP_032874605.1|1238419_1238617_+	XkdX family protein	NA	A0A2H4JAA1	uncultured_Caudovirales_phage	60.0	2.8e-13
WP_032874607.1|1238673_1239435_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003154815.1|1239486_1239750_+	hemolysin XhlA family protein	NA	A0A2H4JD40	uncultured_Caudovirales_phage	63.1	8.8e-23
WP_003154813.1|1239763_1240027_+|holin	phage holin	holin	A0A2H4J6M0	uncultured_Caudovirales_phage	65.5	2.3e-23
WP_032874609.1|1240040_1240919_+	LysM peptidoglycan-binding domain-containing protein	NA	Q9ZXD7	Bacillus_phage	60.2	3.1e-80
>prophage 3
NZ_CP040881	Bacillus sp. HNA3 chromosome, complete genome	3929648	1791566	1797780	3929648		Bacillus_phage(50.0%)	7	NA	NA
WP_003154061.1|1791566_1791959_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	G3MBF1	Bacillus_virus	59.1	3.8e-30
WP_007611605.1|1791918_1794021_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	U5PY35	Bacillus_phage	85.7	0.0e+00
WP_012117608.1|1794038_1795028_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	F8WQ21	Bacillus_phage	83.0	1.1e-155
WP_032874993.1|1795076_1795697_+	hypothetical protein	NA	A0A127AYS1	Bacillus_phage	48.4	5.4e-47
WP_032874995.1|1795746_1796505_-	N-acetylmuramoyl-L-alanine amidase	NA	E5DV68	Deep-sea_thermophilic_phage	50.4	3.6e-53
WP_032874997.1|1796538_1796763_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015417523.1|1796811_1797780_+	stage V sporulation protein K	NA	G3MAX6	Bacillus_virus	40.9	8.0e-53
>prophage 4
NZ_CP040881	Bacillus sp. HNA3 chromosome, complete genome	3929648	2239635	2245888	3929648		Staphylococcus_phage(66.67%)	9	NA	NA
WP_007409428.1|2239635_2240229_-	SMC-Scp complex subunit ScpB	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	36.6	2.6e-14
WP_007409427.1|2240218_2240974_-	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	25.7	2.9e-10
WP_003153376.1|2241181_2241271_+	YjcZ family sporulation protein	NA	NA	NA	NA	NA
WP_032873229.1|2241358_2241880_+	DUF309 domain-containing protein	NA	NA	NA	NA	NA
WP_003153373.1|2241945_2242320_-	GNAT family N-acetyltransferase RibT	NA	NA	NA	NA	NA
WP_003153372.1|2242436_2242901_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	59.3	1.2e-43
WP_003153371.1|2242933_2244130_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	54.9	2.1e-116
WP_032873228.1|2244144_2244792_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	44.3	1.1e-39
WP_032873227.1|2244772_2245888_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	36.6	4.4e-55
>prophage 5
NZ_CP040881	Bacillus sp. HNA3 chromosome, complete genome	3929648	3621678	3672382	3929648	coat,holin,lysis	Bacillus_phage(40.0%)	55	NA	NA
WP_032875822.1|3621678_3622614_-	sensor histidine kinase	NA	W8CYF6	Bacillus_phage	28.9	4.4e-24
WP_032875820.1|3622614_3623313_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	35.8	4.1e-35
WP_032875817.1|3623504_3624371_-	DUF4097 family beta strand repeat protein	NA	NA	NA	NA	NA
WP_012118718.1|3624391_3625096_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_032876931.1|3625160_3626087_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	45.9	1.1e-43
WP_003150986.1|3626435_3626891_-	dTDP-4-dehydrorhamnose 3,5-epimerase family protein	NA	NA	NA	NA	NA
WP_032875814.1|3626887_3627736_-	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	37.3	7.0e-37
WP_032875811.1|3627756_3628704_-	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	43.2	4.5e-69
WP_032875808.1|3628706_3629444_-	NTP transferase domain-containing protein	NA	G3MA50	Bacillus_virus	42.7	5.0e-47
WP_032875805.1|3629471_3630476_-|coat	spore coat protein	coat	NA	NA	NA	NA
WP_032875802.1|3630477_3631218_-|coat	spore coat protein	coat	NA	NA	NA	NA
WP_032875799.1|3631210_3632332_-|coat	spore coat protein	coat	NA	NA	NA	NA
WP_032875796.1|3632331_3633195_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_032875793.1|3633195_3634365_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_032875790.1|3634387_3635812_-	CDP-glycerol glycerophosphotransferase family protein	NA	NA	NA	NA	NA
WP_032875786.1|3635816_3636587_-	glycosyltransferase family 2 protein	NA	A0A0F7L2F7	uncultured_marine_virus	26.3	4.4e-06
WP_007614539.1|3636867_3637413_+|coat	spore coat protein GerQ	coat	NA	NA	NA	NA
WP_003150969.1|3637459_3637831_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_032875783.1|3637894_3639214_-	purine/pyrimidine permease	NA	NA	NA	NA	NA
WP_032876928.1|3639232_3639655_-	YwdI family protein	NA	NA	NA	NA	NA
WP_012118732.1|3639713_3640397_-	uracil-DNA glycosylase	NA	A0A172DS90	Canid_alphaherpesvirus	44.7	3.2e-48
WP_032876926.1|3640411_3641218_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_032875781.1|3641302_3641830_-	hypothetical protein	NA	NA	NA	NA	NA
WP_007614551.1|3642501_3642840_-	PadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_032875776.1|3642989_3643802_+	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
WP_007407702.1|3643832_3644072_-	hypothetical protein	NA	NA	NA	NA	NA
WP_032875773.1|3644171_3645611_-	sucrose-6-phosphate hydrolase	NA	F8WPR5	Bacillus_phage	25.7	3.7e-22
WP_032875772.1|3645607_3646990_-	PTS sucrose transporter subunit IIBC	NA	NA	NA	NA	NA
WP_012118737.1|3647208_3648039_-	transcription antiterminator	NA	NA	NA	NA	NA
WP_032875769.1|3648062_3648377_-	hypothetical protein	NA	NA	NA	NA	NA
WP_032875766.1|3648902_3651314_+	S8 family serine peptidase	NA	A0A217EQY2	Bacillus_phage	36.8	3.8e-19
WP_032875763.1|3651355_3652357_-	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_032875761.1|3652520_3653270_-	oxygen-insensitive NADPH nitroreductase	NA	NA	NA	NA	NA
WP_007614568.1|3653372_3654560_-	FtsW/RodA/SpoVE family cell cycle protein	NA	NA	NA	NA	NA
WP_032875758.1|3654761_3655220_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003150937.1|3655512_3655773_+	spore morphogenesis/germination protein YwcE	NA	NA	NA	NA	NA
WP_014419185.1|3655816_3656185_-	cytochrome aa3 quinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003150930.1|3656186_3656801_-	cytochrome aa3 quinol oxidase subunit III	NA	NA	NA	NA	NA
WP_007614578.1|3656815_3658765_-	cytochrome aa3 quinol oxidase subunit I	NA	NA	NA	NA	NA
WP_087920812.1|3658792_3659758_-	cytochrome aa3 quinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003150926.1|3660261_3660507_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_032875756.1|3660524_3662066_-	UDP-glucose--hexose-1-phosphate uridylyltransferase	NA	NA	NA	NA	NA
WP_032875753.1|3662055_3663240_-	galactokinase	NA	NA	NA	NA	NA
WP_029325749.1|3663291_3663678_-	GtrA family protein	NA	NA	NA	NA	NA
WP_007614590.1|3663757_3664381_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003150917.1|3664716_3664878_+	DNA-binding anti-repressor SinI	NA	NA	NA	NA	NA
WP_032875750.1|3665094_3665775_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_032875747.1|3665774_3666449_+	streptomycin biosynthesis protein StrF	NA	NA	NA	NA	NA
WP_012118748.1|3666469_3667072_-	DsbA family oxidoreductase	NA	NA	NA	NA	NA
WP_032875744.1|3667157_3668414_-	deferrochelatase/peroxidase EfeB	NA	NA	NA	NA	NA
WP_032875742.1|3668826_3669501_-	thiamine phosphate synthase	NA	NA	NA	NA	NA
WP_032875739.1|3669497_3670316_-	hydroxyethylthiazole kinase	NA	NA	NA	NA	NA
WP_003150908.1|3670318_3671227_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_007407725.1|3671333_3671720_+|holin	CidA/LrgA family holin-like protein	holin	NA	NA	NA	NA
WP_012118753.1|3671701_3672382_+|lysis	CidB/LrgB family autolysis modulator	lysis	NA	NA	NA	NA
