assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_012530335.1_ASM1253033v1	NZ_CP051269	Salmonella enterica subsp. enterica serovar Typhimurium strain OLF_FSR1_WB_Finch_ST-13 chromosome, complete genome	1	1560204-1560293	1	CRISPRCasFinder	no		cas3,DEDDh,WYL,DinG,cas14j,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	Orphan	TTGTCCAACGGATGTCCAACGGAT	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,WYL,DinG,cas14j,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	NA|113aa|up_9|NZ_CP051269.1_1555452_1555791_-,NA|61aa|up_8|NZ_CP051269.1_1555811_1555994_-,NA|66aa|up_7|NZ_CP051269.1_1556013_1556211_+,NA|65aa|down_1|NZ_CP051269.1_1562210_1562405_+,NA|97aa|down_2|NZ_CP051269.1_1562404_1562695_+,NA|99aa|down_3|NZ_CP051269.1_1562697_1562994_+	NA|113aa|up_9|NZ_CP051269.1_1555452_1555791_-	NA	NA|61aa|up_8|NZ_CP051269.1_1555811_1555994_-	NA	NA|66aa|up_7|NZ_CP051269.1_1556013_1556211_+	NA	NA|70aa|up_6|NZ_CP051269.1_1556357_1556567_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|358aa|up_5|NZ_CP051269.1_1556607_1557681_-	pfam13614, AAA_31, AAA domain	NA|114aa|up_4|NZ_CP051269.1_1557819_1558161_-	pfam11225, DUF3024, Protein of unknown function (DUF3024)	NA|230aa|up_3|NZ_CP051269.1_1558227_1558917_-	COG2932, COG2932, Predicted transcriptional regulator [Transcription]	NA|72aa|up_2|NZ_CP051269.1_1559027_1559243_+	pfam15943, YdaS_antitoxin, Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT	NA|94aa|up_1|NZ_CP051269.1_1559353_1559635_+	pfam05269, Phage_CII, Bacteriophage CII protein	NA|49aa|up_0|NZ_CP051269.1_1559669_1559816_+	pfam10872, DUF2740, Protein of unknown function (DUF2740)	NA|479aa|down_0|NZ_CP051269.1_1560697_1562134_+	TIGR03600, phage_DnaB, phage replicative helicase, DnaB family, HK022 subfamily	NA|65aa|down_1|NZ_CP051269.1_1562210_1562405_+	NA	NA|97aa|down_2|NZ_CP051269.1_1562404_1562695_+	NA	NA|99aa|down_3|NZ_CP051269.1_1562697_1562994_+	NA	NA|149aa|down_4|NZ_CP051269.1_1562950_1563397_+	pfam05772, NinB, NinB protein	NA|58aa|down_5|NZ_CP051269.1_1563393_1563567_+	pfam17466, NinD, Family of unknown function	NA|59aa|down_6|NZ_CP051269.1_1563533_1563710_+	pfam05322, NinE, NINE Protein	NA|114aa|down_7|NZ_CP051269.1_1563712_1564054_+	PHA01519, PHA01519, hypothetical protein	NA|59aa|down_8|NZ_CP051269.1_1564046_1564223_+	pfam05810, NinF, NinF protein	NA|202aa|down_9|NZ_CP051269.1_1564215_1564821_+	pfam05766, NinG, Bacteriophage Lambda NinG protein
GCF_012530335.1_ASM1253033v1	NZ_CP051269	Salmonella enterica subsp. enterica serovar Typhimurium strain OLF_FSR1_WB_Finch_ST-13 chromosome, complete genome	2	3786119-3786228	2	CRISPRCasFinder	no		cas3,DEDDh,WYL,DinG,cas14j,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	Orphan	TTAAAAAAAGGTGGTACAGGGTGGGACA	28	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,WYL,DinG,cas14j,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	NA|198aa|up_4|NZ_CP051269.1_3779991_3780585_+,NA|276aa|up_2|NZ_CP051269.1_3782502_3783330_-,NA	NA|161aa|up_9|NZ_CP051269.1_3760706_3761189_+	PRK05422, smpB, SsrA-binding protein SmpB	NA|3825aa|up_8|NZ_CP051269.1_3761802_3773277_+	pfam17936, Big_6, Bacterial Ig domain	NA|470aa|up_7|NZ_CP051269.1_3773341_3774751_+	TIGR01844, Proteases_secretion_protein_PrtF, type I secretion outer membrane protein, TolC family	NA|727aa|up_6|NZ_CP051269.1_3774747_3776928_+	TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family	NA|388aa|up_5|NZ_CP051269.1_3776935_3778099_+	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family	NA|198aa|up_4|NZ_CP051269.1_3779991_3780585_+	NA	NA|398aa|up_3|NZ_CP051269.1_3780974_3782168_+	pfam02810, SEC-C, SEC-C motif	NA|276aa|up_2|NZ_CP051269.1_3782502_3783330_-	NA	NA|72aa|up_1|NZ_CP051269.1_3783780_3783996_+	COG3311, AlpA, Predicted transcriptional regulator [Transcription]	NA|690aa|up_0|NZ_CP051269.1_3784031_3786101_+	COG5519, COG5519, Superfamily II helicase and inactivated derivatives [DNA replication, recombination, and repair]	NA|428aa|down_0|NZ_CP051269.1_3786603_3787887_+	COG3950, COG3950, Predicted ATP-binding protein involved in virulence [General function prediction only]	NA|119aa|down_1|NZ_CP051269.1_3788903_3789260_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|95aa|down_2|NZ_CP051269.1_3789354_3789639_+	COG3423, Nlp, Predicted transcriptional regulator [Transcription]	NA|174aa|down_3|NZ_CP051269.1_3789751_3790273_+	COG3730, SrlA, Phosphotransferase system sorbitol-specific component IIC [Carbohydrate transport and metabolism]	NA|125aa|down_4|NZ_CP051269.1_3790269_3790644_+	COG3731, SrlB, Phosphotransferase system sorbitol-specific component IIA [Carbohydrate transport and metabolism]	NA|327aa|down_5|NZ_CP051269.1_3790640_3791621_+	COG3732, SrlE, Phosphotransferase system sorbitol-specific component IIBC [Carbohydrate transport and metabolism]	NA|338aa|down_6|NZ_CP051269.1_3791631_3792645_+	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|401aa|down_7|NZ_CP051269.1_3792939_3794142_+	pfam13020, DUF3883, Domain of unknown function (DUF3883)	NA|212aa|down_8|NZ_CP051269.1_3794215_3794851_-	TIGR03128, RuMP_HxlA, 3-hexulose-6-phosphate synthase	NA|188aa|down_9|NZ_CP051269.1_3794874_3795438_-	TIGR03127, RuMP_HxlB, 6-phospho 3-hexuloisomerase
GCF_012530335.1_ASM1253033v1	NZ_CP051269	Salmonella enterica subsp. enterica serovar Typhimurium strain OLF_FSR1_WB_Finch_ST-13 chromosome, complete genome	3	3977165-3978152	3,1,1,2,2,4	CRISPRCasFinder,CRT,PILER-CR,PILER-CR,CRT,CRISPRCasFinder	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	cas3,DEDDh,WYL,DinG,cas14j,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,GGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29,28,29,29	0	0	NA	NA	I-E:I-E:I-E:I-E:I-E:I-E	14,15,13,13,15,14	15	TypeI-E	cas3,DEDDh,WYL,DinG,cas14j,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	NA,NA	NA|254aa|up_9|NZ_CP051269.1_3969031_3969793_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP051269.1_3969773_3970823_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP051269.1_3970819_3971299_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP051269.1_3971298_3972009_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP051269.1_3972027_3972339_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP051269.1_3972529_3972853_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP051269.1_3972903_3973509_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|480aa|up_2|NZ_CP051269.1_3973495_3974935_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP051269.1_3974944_3975853_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|349aa|up_0|NZ_CP051269.1_3976103_3977150_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NZ_CP051269.1_3978248_3978542_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|307aa|down_1|NZ_CP051269.1_3978541_3979462_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|NZ_CP051269.1_3979458_3980109_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|NZ_CP051269.1_3980090_3980837_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|353aa|down_4|NZ_CP051269.1_3980847_3981906_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|187aa|down_5|NZ_CP051269.1_3981919_3982480_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|519aa|down_6|NZ_CP051269.1_3982476_3984033_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|888aa|down_7|NZ_CP051269.1_3984044_3986708_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|318aa|down_8|NZ_CP051269.1_3987152_3988106_+	PRK15379, PRK15379, type III secretion system effector SopD	NA|245aa|down_9|NZ_CP051269.1_3988193_3988928_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase
GCF_012530335.1_ASM1253033v1	NZ_CP051269	Salmonella enterica subsp. enterica serovar Typhimurium strain OLF_FSR1_WB_Finch_ST-13 chromosome, complete genome	4	3994284-3994557	5,3,3	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	cas3,DEDDh,WYL,DinG,cas14j,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCNGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACACT	29,29,30	0	0	NA	NA	I-E:I-E:I-E	4,4,3	4	TypeI-E	cas3,DEDDh,WYL,DinG,cas14j,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	NA,NA	cas7|353aa|up_9|NZ_CP051269.1_3980847_3981906_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|187aa|up_8|NZ_CP051269.1_3981919_3982480_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|519aa|up_7|NZ_CP051269.1_3982476_3984033_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|888aa|up_6|NZ_CP051269.1_3984044_3986708_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|318aa|up_5|NZ_CP051269.1_3987152_3988106_+	PRK15379, PRK15379, type III secretion system effector SopD	NA|245aa|up_4|NZ_CP051269.1_3988193_3988928_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|up_3|NZ_CP051269.1_3989003_3990716_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|600aa|up_2|NZ_CP051269.1_3990715_3992515_-	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|121aa|up_1|NZ_CP051269.1_3992938_3993301_+	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|266aa|up_0|NZ_CP051269.1_3993388_3994186_-	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|224aa|down_0|NZ_CP051269.1_3994852_3995524_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|433aa|down_1|NZ_CP051269.1_3995659_3996958_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_2|NZ_CP051269.1_3997040_3998678_-	PRK05380, pyrG, CTP synthetase; Validated	NA|267aa|down_3|NZ_CP051269.1_3998905_3999706_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|99aa|down_4|NZ_CP051269.1_4000474_4000771_-	COG3668, ParE, Plasmid stabilization system protein [General function prediction only]	NA|119aa|down_5|NZ_CP051269.1_4000736_4001093_-	COG3609, COG3609, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription]	NA|745aa|down_6|NZ_CP051269.1_4001176_4003411_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|432aa|down_7|NZ_CP051269.1_4003462_4004758_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|919aa|down_8|NZ_CP051269.1_4004815_4007572_+	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|381aa|down_9|NZ_CP051269.1_4007615_4008758_-	COG1929, COG1929, Glycerate kinase [Carbohydrate transport and metabolism]
