assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_012317385.1_ASM1231738v1	NZ_CP051144	Romboutsia sp. CE17 chromosome, complete genome	1	88880-88974	1	CRISPRCasFinder	no		PD-DExK,csa3,WYL,DEDDh,cas3HD,cas6,cas8b2,cas7,cas5,cas3,cas4,cas1,cas2,csn2,cas9,DinG,csx1	Orphan	GTAAAAGGATTATATGGAACAGCTCCAGC	29	1	1	88909-88945	NZ_CP051144.1_2733674-2733638	NA	1	1	Orphan	PD-DExK,csa3,WYL,DEDDh,cas3HD,cas6,cas8b2,cas7,cas5,cas3,cas4,cas1,cas2,csn2,cas9,DinG,csx1	NA,NA|271aa|down_9|NZ_CP051144.1_97059_97872_+	NA|692aa|up_9|NZ_CP051144.1_74043_76119_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|451aa|up_8|NZ_CP051144.1_76211_77564_+	COG2851, CitM, H+/citrate symporter [Energy production and conversion]	NA|188aa|up_7|NZ_CP051144.1_77783_78347_+	cd03379, beta_CA_cladeD, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site	NA|95aa|up_6|NZ_CP051144.1_78742_79027_+	PRK13253, PRK13253, citrate lyase subunit gamma; Provisional	NA|303aa|up_5|NZ_CP051144.1_79038_79947_+	TIGR01588, Citrate_lyase_subunit_beta, citrate lyase, beta subunit	NA|518aa|up_4|NZ_CP051144.1_79939_81493_+	COG3051, CitF, Citrate lyase, alpha subunit [Energy production and conversion]	NA|339aa|up_3|NZ_CP051144.1_81556_82573_+	cd02169, Citrate_lyase_ligase, Citrate lyase ligase	NA|456aa|up_2|NZ_CP051144.1_82593_83961_+	TIGR03125, citrate_citG, triphosphoribosyl-dephospho-CoA synthase CitG	NA|765aa|up_1|NZ_CP051144.1_84175_86470_+	PRK11413, PRK11413, putative hydratase; Provisional	NA|226aa|up_0|NZ_CP051144.1_86784_87462_-	COG1802, GntR, Transcriptional regulators [Transcription]	NA|95aa|down_0|NZ_CP051144.1_89248_89533_+	pfam04277, OAD_gamma, Oxaloacetate decarboxylase, gamma chain	NA|118aa|down_1|NZ_CP051144.1_89603_89957_+	PRK09282, PRK09282, pyruvate carboxylase subunit B; Validated	NA|377aa|down_2|NZ_CP051144.1_89984_91115_+	pfam03977, OAD_beta, Na+-transporting oxaloacetate decarboxylase beta subunit	NA|310aa|down_3|NZ_CP051144.1_91206_92136_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|371aa|down_4|NZ_CP051144.1_92304_93417_+	PRK00772, PRK00772, 3-isopropylmalate dehydrogenase; Provisional	NA|150aa|down_5|NZ_CP051144.1_94118_94568_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|358aa|down_6|NZ_CP051144.1_94567_95641_+	pfam13515, FUSC_2, Fusaric acid resistance protein-like	NA|123aa|down_7|NZ_CP051144.1_95999_96368_+	COG1725, COG1725, Predicted transcriptional regulators [Transcription]	NA|233aa|down_8|NZ_CP051144.1_96367_97066_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|271aa|down_9|NZ_CP051144.1_97059_97872_+	NA
GCF_012317385.1_ASM1231738v1	NZ_CP051144	Romboutsia sp. CE17 chromosome, complete genome	2	1128356-1134596	1,2,1,2	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no	WYL,cas6,cas8b2,cas7,cas5,cas3,cas4,cas1,cas2	PD-DExK,csa3,WYL,DEDDh,cas3HD,cas6,cas8b2,cas7,cas5,cas3,cas4,cas1,cas2,csn2,cas9,DinG,csx1	Unclear	GTTTTATATTAA-------CTATGTGGTATGTAAAT,GTTTTATATTAACTATGTGGTATGTAAAT,GTTTTATATTAACTATGTGGTATGTAAAT,GTTTTATATTAA-------CTATGTGGTATGTAAAT	36,29,29,36	0	0	NA	NA	NA:I-A:I-A:NA	92,94,94,92	94	Unclear	PD-DExK,csa3,WYL,DEDDh,cas3HD,cas6,cas8b2,cas7,cas5,cas3,cas4,cas1,cas2,csn2,cas9,DinG,csx1	NA|298aa|up_9|NZ_CP051144.1_1117531_1118425_-,NA|212aa|down_7|NZ_CP051144.1_1141788_1142424_+	NA|298aa|up_9|NZ_CP051144.1_1117531_1118425_-	NA	WYL|305aa|up_8|NZ_CP051144.1_1118842_1119757_+	pfam13280, WYL, WYL domain	cas6|244aa|up_7|NZ_CP051144.1_1119835_1120567_+	COG1583, COG1583, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	cas8b2|608aa|up_6|NZ_CP051144.1_1120577_1122401_+	cd09665, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1	cas7|304aa|up_5|NZ_CP051144.1_1122402_1123314_+	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas5|231aa|up_4|NZ_CP051144.1_1123315_1124008_+	cd09658, Cas5_I-B, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas3|771aa|up_3|NZ_CP051144.1_1124030_1126343_+	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3	cas4|174aa|up_2|NZ_CP051144.1_1126403_1126925_+	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas1|327aa|up_1|NZ_CP051144.1_1126924_1127905_+	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP	cas2|89aa|up_0|NZ_CP051144.1_1127906_1128173_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|414aa|down_0|NZ_CP051144.1_1134810_1136052_-	pfam00872, Transposase_mut, Transposase, Mutator family	NA|118aa|down_1|NZ_CP051144.1_1136780_1137134_+	cd02233, cupin_HNL-like, Granulicella tundricola hydroxynitrile lyase (GtHNL) and related proteins, cupin domain	NA|180aa|down_2|NZ_CP051144.1_1137368_1137908_+	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|374aa|down_3|NZ_CP051144.1_1137934_1139056_+	COG1453, COG1453, Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]	NA|127aa|down_4|NZ_CP051144.1_1139080_1139461_+	cd01109, HTH_YyaN, Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB	NA|233aa|down_5|NZ_CP051144.1_1139513_1140212_-	COG2364, COG2364, Predicted membrane protein [Function unknown]	NA|297aa|down_6|NZ_CP051144.1_1140611_1141502_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|212aa|down_7|NZ_CP051144.1_1141788_1142424_+	NA	NA|96aa|down_8|NZ_CP051144.1_1142687_1142975_+	cd02230, cupin_HP0902-like, Helicobacter pylori HP0902 and related proteins, cupin domain	NA|63aa|down_9|NZ_CP051144.1_1143019_1143208_+	TIGR03980, conserved_hypothetical_protein, hybrid cluster protein-associated redox disulfide domain
GCF_012317385.1_ASM1231738v1	NZ_CP051144	Romboutsia sp. CE17 chromosome, complete genome	3	1136170-1136329	3	PILER-CR	no	WYL,cas6,cas8b2,cas7,cas5,cas3,cas4,cas1,cas2	PD-DExK,csa3,WYL,DEDDh,cas3HD,cas6,cas8b2,cas7,cas5,cas3,cas4,cas1,cas2,csn2,cas9,DinG,csx1	Unclear	GTTTTATATTAA-------CTATGTGGTATGTAAATT	37	0	0	NA	NA	NA	2	2	Unclear	PD-DExK,csa3,WYL,DEDDh,cas3HD,cas6,cas8b2,cas7,cas5,cas3,cas4,cas1,cas2,csn2,cas9,DinG,csx1	NA,NA|212aa|down_6|NZ_CP051144.1_1141788_1142424_+	WYL|305aa|up_9|NZ_CP051144.1_1118842_1119757_+	pfam13280, WYL, WYL domain	cas6|244aa|up_8|NZ_CP051144.1_1119835_1120567_+	COG1583, COG1583, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	cas8b2|608aa|up_7|NZ_CP051144.1_1120577_1122401_+	cd09665, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1	cas7|304aa|up_6|NZ_CP051144.1_1122402_1123314_+	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas5|231aa|up_5|NZ_CP051144.1_1123315_1124008_+	cd09658, Cas5_I-B, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas3|771aa|up_4|NZ_CP051144.1_1124030_1126343_+	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3	cas4|174aa|up_3|NZ_CP051144.1_1126403_1126925_+	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas1|327aa|up_2|NZ_CP051144.1_1126924_1127905_+	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP	cas2|89aa|up_1|NZ_CP051144.1_1127906_1128173_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|414aa|up_0|NZ_CP051144.1_1134810_1136052_-	pfam00872, Transposase_mut, Transposase, Mutator family	NA|118aa|down_0|NZ_CP051144.1_1136780_1137134_+	cd02233, cupin_HNL-like, Granulicella tundricola hydroxynitrile lyase (GtHNL) and related proteins, cupin domain	NA|180aa|down_1|NZ_CP051144.1_1137368_1137908_+	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|374aa|down_2|NZ_CP051144.1_1137934_1139056_+	COG1453, COG1453, Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]	NA|127aa|down_3|NZ_CP051144.1_1139080_1139461_+	cd01109, HTH_YyaN, Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB	NA|233aa|down_4|NZ_CP051144.1_1139513_1140212_-	COG2364, COG2364, Predicted membrane protein [Function unknown]	NA|297aa|down_5|NZ_CP051144.1_1140611_1141502_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|212aa|down_6|NZ_CP051144.1_1141788_1142424_+	NA	NA|96aa|down_7|NZ_CP051144.1_1142687_1142975_+	cd02230, cupin_HP0902-like, Helicobacter pylori HP0902 and related proteins, cupin domain	NA|63aa|down_8|NZ_CP051144.1_1143019_1143208_+	TIGR03980, conserved_hypothetical_protein, hybrid cluster protein-associated redox disulfide domain	NA|576aa|down_9|NZ_CP051144.1_1143403_1145131_+	PRK05290, PRK05290, hybrid cluster protein; Provisional
GCF_012317385.1_ASM1231738v1	NZ_CP051144	Romboutsia sp. CE17 chromosome, complete genome	4	1335663-1336424	3,2,4	CRISPRCasFinder,CRT,PILER-CR	no	csn2,cas2,cas1,cas9	PD-DExK,csa3,WYL,DEDDh,cas3HD,cas6,cas8b2,cas7,cas5,cas3,cas4,cas1,cas2,csn2,cas9,DinG,csx1	Type II-C,Type II-B,Type II-A	GTTTTAATACCATCTAAAATAACATAACTCTAAAAC,GTTTTAATACCATCTAAAATAACATAACTCTAAAAC,GTTTTAGAGTTATGTTATTTTAGATGGTATTAAAAC	36,36,36	0	0	NA	NA	NA:NA:NA	11,11,11	11	TypeII-C,TypeII-B,TypeII-A	PD-DExK,csa3,WYL,DEDDh,cas3HD,cas6,cas8b2,cas7,cas5,cas3,cas4,cas1,cas2,csn2,cas9,DinG,csx1	NA|152aa|up_9|NZ_CP051144.1_1326536_1326992_-,NA|160aa|up_4|NZ_CP051144.1_1332050_1332530_+,NA|184aa|up_3|NZ_CP051144.1_1332739_1333291_-,NA|78aa|up_2|NZ_CP051144.1_1333367_1333601_+,NA|177aa|up_1|NZ_CP051144.1_1333857_1334388_-,NA	NA|152aa|up_9|NZ_CP051144.1_1326536_1326992_-	NA	NA|348aa|up_8|NZ_CP051144.1_1327174_1328218_-	pfam07510, DUF1524, Protein of unknown function (DUF1524)	NA|286aa|up_7|NZ_CP051144.1_1328145_1329003_-	pfam03235, DUF262, Protein of unknown function DUF262	NA|408aa|up_6|NZ_CP051144.1_1329107_1330331_-	cd17500, RMtype1_S_MmaGORF2198P_TRD1-CR1_like, Type I restriction-modification system specificity (S) subunit TRD-CR, similar to Methanosarcina mazei Goe1 S subunit (S	NA|498aa|up_5|NZ_CP051144.1_1330320_1331814_-	COG0286, HsdM, Type I restriction-modification system methyltransferase subunit [Defense mechanisms]	NA|160aa|up_4|NZ_CP051144.1_1332050_1332530_+	NA	NA|184aa|up_3|NZ_CP051144.1_1332739_1333291_-	NA	NA|78aa|up_2|NZ_CP051144.1_1333367_1333601_+	NA	NA|177aa|up_1|NZ_CP051144.1_1333857_1334388_-	NA	NA|141aa|up_0|NZ_CP051144.1_1334883_1335306_-	pfam13162, DUF3997, Protein of unknown function (DUF3997)	csn2|232aa|down_0|NZ_CP051144.1_1336519_1337215_-	cd09644, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|102aa|down_1|NZ_CP051144.1_1337211_1337517_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|290aa|down_2|NZ_CP051144.1_1337528_1338398_-	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas9|1318aa|down_3|NZ_CP051144.1_1338401_1342355_-	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9	NA|242aa|down_4|NZ_CP051144.1_1342628_1343354_-	PRK06921, PRK06921, hypothetical protein; Provisional	NA|350aa|down_5|NZ_CP051144.1_1343304_1344354_-	COG3935, DnaD, Putative primosome component and related proteins [DNA replication, recombination, and repair]	NA|340aa|down_6|NZ_CP051144.1_1344453_1345473_-	COG5377, COG5377, Phage-related protein, predicted endonuclease [DNA replication, recombination, and repair]	NA|269aa|down_7|NZ_CP051144.1_1345558_1346365_-	COG3617, COG3617, Prophage antirepressor [Transcription]	NA|79aa|down_8|NZ_CP051144.1_1346366_1346603_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|140aa|down_9|NZ_CP051144.1_1346921_1347341_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins
