assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_012278405.1_ASM1227840v1	NZ_CP031515	Dickeya zeae strain EC2 chromosome, complete genome	1	430616-431620	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,csa3,DinG,DEDDh,RT,cas6f,cas7f,cas5f,cas8f,cas3f	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	15,16,16	16	TypeI-E	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,csa3,DinG,DEDDh,RT,cas6f,cas7f,cas5f,cas8f,cas3f	NA|88aa|up_8|NZ_CP031515.1_420557_420821_-,NA	NA|432aa|up_9|NZ_CP031515.1_419208_420504_-	COG1898, RfbC, dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes [Cell envelope biogenesis, outer membrane]	NA|88aa|up_8|NZ_CP031515.1_420557_420821_-	NA	cas3|918aa|up_7|NZ_CP031515.1_421585_424339_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|512aa|up_6|NZ_CP031515.1_424603_426139_+	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cse2gr11|240aa|up_5|NZ_CP031515.1_426131_426851_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|354aa|up_4|NZ_CP031515.1_426847_427909_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|246aa|up_3|NZ_CP031515.1_427916_428654_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|216aa|up_2|NZ_CP031515.1_428653_429301_+	smart01101, CRISPR_assoc, This domain forms an anti-parallel beta strand structure with flanking alpha helical regions	cas1|308aa|up_1|NZ_CP031515.1_429317_430241_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP031515.1_430237_430531_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|560aa|down_0|NZ_CP031515.1_431679_433359_-	PRK15041, PRK15041, methyl-accepting chemotaxis protein	NA|151aa|down_1|NZ_CP031515.1_434101_434554_+	PRK03467, PRK03467, hypothetical protein; Provisional	NA|155aa|down_2|NZ_CP031515.1_434779_435244_-	PRK11121, nrdG, anaerobic ribonucleoside-triphosphate reductase-activating protein	NA|713aa|down_3|NZ_CP031515.1_435344_437483_-	PRK09263, PRK09263, anaerobic ribonucleoside triphosphate reductase; Provisional	NA|303aa|down_4|NZ_CP031515.1_437870_438779_+	pfam02574, S-methyl_trans, Homocysteine S-methyltransferase	NA|514aa|down_5|NZ_CP031515.1_438972_440514_+	cd08503, PBP2_NikA_DppA_OppA_like_17, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|333aa|down_6|NZ_CP031515.1_440563_441562_+	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|274aa|down_7|NZ_CP031515.1_441589_442411_+	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|532aa|down_8|NZ_CP031515.1_442403_443999_+	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|127aa|down_9|NZ_CP031515.1_444264_444645_+	pfam07007, LprI, Lysozyme inhibitor LprI
GCF_012278405.1_ASM1227840v1	NZ_CP031515	Dickeya zeae strain EC2 chromosome, complete genome	2	696398-696975	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no		cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,csa3,DinG,DEDDh,RT,cas6f,cas7f,cas5f,cas8f,cas3f	Orphan	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	8,9,9	9	Orphan	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,csa3,DinG,DEDDh,RT,cas6f,cas7f,cas5f,cas8f,cas3f	NA|20aa|up_8|NZ_CP031515.1_688070_688130_+,NA	NA|295aa|up_9|NZ_CP031515.1_687077_687962_+	PRK11189, PRK11189, lipoprotein NlpI; Provisional	NA|20aa|up_8|NZ_CP031515.1_688070_688130_+	NA	NA|626aa|up_7|NZ_CP031515.1_688142_690020_+	PRK11634, PRK11634, ATP-dependent RNA helicase DeaD; Provisional	NA|441aa|up_6|NZ_CP031515.1_690156_691479_+	pfam13006, Nterm_IS4, Insertion element 4 transposase N-terminal	NA|340aa|up_5|NZ_CP031515.1_691527_692547_-	PRK10508, PRK10508, luciferase-like monooxygenase	NA|293aa|up_4|NZ_CP031515.1_692665_693544_-	PRK15447, PRK15447, putative protease; Provisional	NA|333aa|up_3|NZ_CP031515.1_693562_694561_-	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|175aa|up_2|NZ_CP031515.1_694881_695406_+	COG3154, COG3154, Putative lipid carrier protein [Lipid metabolism]	NA|168aa|up_1|NZ_CP031515.1_695399_695903_+	COG3153, COG3153, Predicted acetyltransferase [General function prediction only]	NA|101aa|up_0|NZ_CP031515.1_695889_696192_-	PRK00329, PRK00329, GIY-YIG nuclease superfamily protein; Validated	NA|260aa|down_0|NZ_CP031515.1_697167_697947_+	PRK05283, PRK05283, deoxyribose-phosphate aldolase; Provisional	NA|444aa|down_1|NZ_CP031515.1_698007_699339_+	PRK05820, deoA, thymidine phosphorylase; Reviewed	NA|408aa|down_2|NZ_CP031515.1_699421_700645_+	PRK05362, PRK05362, phosphopentomutase; Provisional	NA|242aa|down_3|NZ_CP031515.1_700760_701486_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|down_4|NZ_CP031515.1_701890_702334_-	PRK09491, rimI, ribosomal-protein-alanine N-acetyltransferase; Provisional	NA|140aa|down_5|NZ_CP031515.1_702302_702722_-	PRK06856, PRK06856, DNA polymerase III subunit psi; Validated	NA|343aa|down_6|NZ_CP031515.1_702896_703925_+	PRK09489, rsmC, 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	NA|332aa|down_7|NZ_CP031515.1_703993_704989_-	cd19076, AKR_AKR13A_13D, AKR13A and AKR13D families of aldo-keto reductase (AKR)	NA|301aa|down_8|NZ_CP031515.1_705103_706006_+	cd08472, PBP2_CrgA_like_3, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold	NA|99aa|down_9|NZ_CP031515.1_706594_706891_-	pfam07256, DUF1435, Protein of unknown function (DUF1435)
GCF_012278405.1_ASM1227840v1	NZ_CP031515	Dickeya zeae strain EC2 chromosome, complete genome	3	3690429-3692257	3,3,3,4	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no	cas6f,cas7f,cas5f,cas8f,cas3f,cas1	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,csa3,DinG,DEDDh,RT,cas6f,cas7f,cas5f,cas8f,cas3f	Type I-F	GTGAACTGCCGCATAGGCAGCTTAGAAA,GTGAACTGCCGCATAGGCAGCTTAGAAA,GTGAACTGCCGNATAGGCAGCTTAGAAA,ACTGCCGCATAGGCAGCTTAGAAA	28,28,28,24	0	0	NA	NA	I-F:I-F:I-F:I-F	27,30,30,27	30	TypeI-F	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,csa3,DinG,DEDDh,RT,cas6f,cas7f,cas5f,cas8f,cas3f	NA|56aa|up_5|NZ_CP031515.1_3685015_3685183_+,NA	NA|351aa|up_9|NZ_CP031515.1_3681039_3682092_-	cd13549, PBP2_Fbp_like_3, Substrate binding domain of an uncharacterized ferric iron transporter, a member of the type 2 periplasmic binding fold superfamily	NA|236aa|up_8|NZ_CP031515.1_3682360_3683068_+	TIGR03337, phnR, phosphonate utilization transcriptional regulator PhnR	NA|339aa|up_7|NZ_CP031515.1_3683279_3684296_+	PRK11815, PRK11815, tRNA dihydrouridine(20/20a) synthase DusA	NA|93aa|up_6|NZ_CP031515.1_3684484_3684763_+	PRK09459, pspG, envelope stress response protein PspG	NA|56aa|up_5|NZ_CP031515.1_3685015_3685183_+	NA	NA|332aa|up_4|NZ_CP031515.1_3685170_3686166_-	PRK10754, PRK10754, NADPH:quinone reductase	NA|468aa|up_3|NZ_CP031515.1_3686289_3687693_+	PRK08006, PRK08006, replicative DNA helicase DnaB	NA|359aa|up_2|NZ_CP031515.1_3687727_3688804_+	cd06827, PLPDE_III_AR_proteobact, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Proteobacterial Alanine Racemases	NA|83aa|up_1|NZ_CP031515.1_3688961_3689210_-	pfam07338, DUF1471, Protein of unknown function (DUF1471)	NA|256aa|up_0|NZ_CP031515.1_3689454_3690222_-	cd01069, PBP2_PheC, Cyclohexadienyl dehydratase, a member of the type 2 periplasmic binding fold protein superfamily	NA|458aa|down_0|NZ_CP031515.1_3692387_3693761_-	PRK10238, PRK10238, aromatic amino acid transporter AroP	NA|159aa|down_1|NZ_CP031515.1_3694132_3694609_+	COG1522, Lrp, Transcriptional regulators [Transcription]	NA|205aa|down_2|NZ_CP031515.1_3694859_3695474_+	COG1284, COG1284, Uncharacterized conserved protein [Function unknown]	NA|398aa|down_3|NZ_CP031515.1_3695514_3696708_+	PRK09257, PRK09257, aromatic amino acid transaminase	cas6f|185aa|down_4|NZ_CP031515.1_3698643_3699198_-	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4)	cas7f|338aa|down_5|NZ_CP031515.1_3699202_3700216_-	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas5f|319aa|down_6|NZ_CP031515.1_3700227_3701184_-	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas8f|446aa|down_7|NZ_CP031515.1_3701180_3702518_-	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1	cas3f|1093aa|down_8|NZ_CP031515.1_3702919_3706198_-	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	cas1|334aa|down_9|NZ_CP031515.1_3706194_3707196_-	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST
GCF_012278405.1_ASM1227840v1	NZ_CP031515	Dickeya zeae strain EC2 chromosome, complete genome	4	3697165-3698515	4,4,5	CRISPRCasFinder,CRT,PILER-CR	no	cas6f,cas7f,cas5f,cas8f,cas3f,cas1	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,csa3,DinG,DEDDh,RT,cas6f,cas7f,cas5f,cas8f,cas3f	Type I-F	TTTCTAAGCTGCCTACACGGCAGTGAAC,TTTCTAAGCTGCCTACACGGCAGTGAAC,GTTCACTGCCGCACAGGCAGCTTAGAAA	28,28,28	0	0	NA	NA	I-F:I-F:I-F	22,22,22	22	TypeI-F	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,csa3,DinG,DEDDh,RT,cas6f,cas7f,cas5f,cas8f,cas3f	NA|56aa|up_9|NZ_CP031515.1_3685015_3685183_+,NA	NA|56aa|up_9|NZ_CP031515.1_3685015_3685183_+	NA	NA|332aa|up_8|NZ_CP031515.1_3685170_3686166_-	PRK10754, PRK10754, NADPH:quinone reductase	NA|468aa|up_7|NZ_CP031515.1_3686289_3687693_+	PRK08006, PRK08006, replicative DNA helicase DnaB	NA|359aa|up_6|NZ_CP031515.1_3687727_3688804_+	cd06827, PLPDE_III_AR_proteobact, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Proteobacterial Alanine Racemases	NA|83aa|up_5|NZ_CP031515.1_3688961_3689210_-	pfam07338, DUF1471, Protein of unknown function (DUF1471)	NA|256aa|up_4|NZ_CP031515.1_3689454_3690222_-	cd01069, PBP2_PheC, Cyclohexadienyl dehydratase, a member of the type 2 periplasmic binding fold protein superfamily	NA|458aa|up_3|NZ_CP031515.1_3692387_3693761_-	PRK10238, PRK10238, aromatic amino acid transporter AroP	NA|159aa|up_2|NZ_CP031515.1_3694132_3694609_+	COG1522, Lrp, Transcriptional regulators [Transcription]	NA|205aa|up_1|NZ_CP031515.1_3694859_3695474_+	COG1284, COG1284, Uncharacterized conserved protein [Function unknown]	NA|398aa|up_0|NZ_CP031515.1_3695514_3696708_+	PRK09257, PRK09257, aromatic amino acid transaminase	cas6f|185aa|down_0|NZ_CP031515.1_3698643_3699198_-	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4)	cas7f|338aa|down_1|NZ_CP031515.1_3699202_3700216_-	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas5f|319aa|down_2|NZ_CP031515.1_3700227_3701184_-	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas8f|446aa|down_3|NZ_CP031515.1_3701180_3702518_-	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1	cas3f|1093aa|down_4|NZ_CP031515.1_3702919_3706198_-	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	cas1|334aa|down_5|NZ_CP031515.1_3706194_3707196_-	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	NA|557aa|down_6|NZ_CP031515.1_3709651_3711322_-	PRK15041, PRK15041, methyl-accepting chemotaxis protein	NA|523aa|down_7|NZ_CP031515.1_3712321_3713890_+	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|140aa|down_8|NZ_CP031515.1_3713936_3714356_-	pfam01894, UPF0047, Uncharacterized protein family UPF0047	NA|944aa|down_9|NZ_CP031515.1_3714447_3717279_-	PRK00349, uvrA, excinuclease ABC subunit UvrA
GCF_012278405.1_ASM1227840v1	NZ_CP031515	Dickeya zeae strain EC2 chromosome, complete genome	5	3707494-3709326	5,5	CRISPRCasFinder,CRT	no	cas6f,cas7f,cas5f,cas8f,cas3f,cas1	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,csa3,DinG,DEDDh,RT,cas6f,cas7f,cas5f,cas8f,cas3f	Type I-F	GTTCACTGCCGGATAGGCAGCTTAGAAA,GTTCACTGCCGGATAGGCAGCTTAGAAA	28,28	0	0	NA	NA	I-F:I-F	30,30	30	TypeI-F	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,csa3,DinG,DEDDh,RT,cas6f,cas7f,cas5f,cas8f,cas3f	NA,NA|252aa|down_6|NZ_CP031515.1_3719445_3720201_+,NA|302aa|down_8|NZ_CP031515.1_3721634_3722540_+,NA|72aa|down_9|NZ_CP031515.1_3722858_3723074_+	NA|458aa|up_9|NZ_CP031515.1_3692387_3693761_-	PRK10238, PRK10238, aromatic amino acid transporter AroP	NA|159aa|up_8|NZ_CP031515.1_3694132_3694609_+	COG1522, Lrp, Transcriptional regulators [Transcription]	NA|205aa|up_7|NZ_CP031515.1_3694859_3695474_+	COG1284, COG1284, Uncharacterized conserved protein [Function unknown]	NA|398aa|up_6|NZ_CP031515.1_3695514_3696708_+	PRK09257, PRK09257, aromatic amino acid transaminase	cas6f|185aa|up_5|NZ_CP031515.1_3698643_3699198_-	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4)	cas7f|338aa|up_4|NZ_CP031515.1_3699202_3700216_-	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas5f|319aa|up_3|NZ_CP031515.1_3700227_3701184_-	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas8f|446aa|up_2|NZ_CP031515.1_3701180_3702518_-	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1	cas3f|1093aa|up_1|NZ_CP031515.1_3702919_3706198_-	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	cas1|334aa|up_0|NZ_CP031515.1_3706194_3707196_-	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	NA|557aa|down_0|NZ_CP031515.1_3709651_3711322_-	PRK15041, PRK15041, methyl-accepting chemotaxis protein	NA|523aa|down_1|NZ_CP031515.1_3712321_3713890_+	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|140aa|down_2|NZ_CP031515.1_3713936_3714356_-	pfam01894, UPF0047, Uncharacterized protein family UPF0047	NA|944aa|down_3|NZ_CP031515.1_3714447_3717279_-	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|183aa|down_4|NZ_CP031515.1_3717514_3718063_+	PRK09010, PRK09010, single-stranded DNA-binding protein; Provisional	NA|374aa|down_5|NZ_CP031515.1_3718268_3719389_-	pfam13683, rve_3, Integrase core domain	NA|252aa|down_6|NZ_CP031515.1_3719445_3720201_+	NA	NA|375aa|down_7|NZ_CP031515.1_3720525_3721650_+	pfam09952, AbiEi_2, Transcriptional regulator, AbiEi antitoxin, Type IV TA system	NA|302aa|down_8|NZ_CP031515.1_3721634_3722540_+	NA	NA|72aa|down_9|NZ_CP031515.1_3722858_3723074_+	NA
