assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_012271835.1_ASM1227183v1	NZ_CP048837	[Clostridium] innocuum strain LC-LUMC-CI-001 chromosome, complete genome	1	284652-284766	1	CRISPRCasFinder	no		WYL,csa3,cas3,RT,cas14j,c2c9_V-U4,cas14k,DEDDh,DinG,cas5,cas8c,cas7,cas4,cas1,cas2	Orphan	CTATATAATATAAGGAAGAGTTTTTTT	27	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,cas3,RT,cas14j,c2c9_V-U4,cas14k,DEDDh,DinG,cas5,cas8c,cas7,cas4,cas1,cas2	NA,NA|224aa|down_4|NZ_CP048837.1_288879_289551_+	NA|368aa|up_9|NZ_CP048837.1_269137_270241_+	PRK09601, PRK09601, redox-regulated ATPase YchF	NA|452aa|up_8|NZ_CP048837.1_270407_271763_-	pfam13026, DUF3887, Protein of unknown function (DUF3887)	NA|285aa|up_7|NZ_CP048837.1_271823_272678_-	cd07208, Pat_hypo_Ecoli_yjju_like, Hypothetical patatin similar to yjju protein of Escherichia coli	NA|108aa|up_6|NZ_CP048837.1_272887_273211_+	pfam06153, CdAMP_rec, Cyclic-di-AMP receptor	NA|563aa|up_5|NZ_CP048837.1_273597_275286_-	cd16923, HATPase_VanS-like, Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Enterococcus faecium VanS	NA|234aa|up_4|NZ_CP048837.1_275299_276001_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|370aa|up_3|NZ_CP048837.1_278055_279165_+	cd00854, NagA, N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate	NA|398aa|up_2|NZ_CP048837.1_279582_280776_-	COG5263, COG5263, FOG: Glucan-binding domain (YG repeat) [General function prediction only]	NA|415aa|up_1|NZ_CP048837.1_281035_282280_-	pfam00877, NLPC_P60, NlpC/P60 family	NA|621aa|up_0|NZ_CP048837.1_282459_284322_-	COG0744, MrcB, Membrane carboxypeptidase (penicillin-binding protein) [Cell envelope biogenesis, outer membrane]	NA|139aa|down_0|NZ_CP048837.1_285053_285470_+	pfam09148, DUF1934, Domain of unknown function (DUF1934)	NA|548aa|down_1|NZ_CP048837.1_285466_287110_+	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|107aa|down_2|NZ_CP048837.1_287128_287449_+	TIGR04567, DNA-directed_RNA_polymerase_subunit_delta, DNA-directed RNA polymerase delta subunit	NA|290aa|down_3|NZ_CP048837.1_287709_288579_+	cd00947, TBP_aldolase_IIB, Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases	NA|224aa|down_4|NZ_CP048837.1_288879_289551_+	NA	NA|678aa|down_5|NZ_CP048837.1_289578_291612_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|153aa|down_6|NZ_CP048837.1_291732_292191_+	pfam00359, PTS_EIIA_2, Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2	NA|475aa|down_7|NZ_CP048837.1_292223_293648_+	PRK09410, ulaA, PTS system ascorbate-specific transporter subunit IIC; Reviewed	NA|93aa|down_8|NZ_CP048837.1_293673_293952_+	cd05563, PTS_IIB_ascorbate, PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|311aa|down_9|NZ_CP048837.1_294052_294985_+	cd02012, TPP_TK, Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates
GCF_012271835.1_ASM1227183v1	NZ_CP048837	[Clostridium] innocuum strain LC-LUMC-CI-001 chromosome, complete genome	2	1250451-1251103	2,1,1	CRISPRCasFinder,CRT,PILER-CR	no	csa3	WYL,csa3,cas3,RT,cas14j,c2c9_V-U4,cas14k,DEDDh,DinG,cas5,cas8c,cas7,cas4,cas1,cas2	Type I-A	ATTTAGATCCACAAGCTCCGCGAAAGAGCTTGAC,ATTTAGATCCACAAGCTCCGCGAAAGAGCTTGAC,ATTTAGATCCACAAGCTCCGCGAAAGAGCTTGAC	34,34,34	0	0	NA	NA	NA:NA:NA	9,9,8	9	Orphan	WYL,csa3,cas3,RT,cas14j,c2c9_V-U4,cas14k,DEDDh,DinG,cas5,cas8c,cas7,cas4,cas1,cas2	NA|253aa|up_2|NZ_CP048837.1_1245226_1245985_+,NA|287aa|down_5|NZ_CP048837.1_1257338_1258199_+,NA|310aa|down_6|NZ_CP048837.1_1258199_1259129_+,NA|72aa|down_8|NZ_CP048837.1_1260638_1260854_-,NA|88aa|down_9|NZ_CP048837.1_1261188_1261452_+	NA|146aa|up_9|NZ_CP048837.1_1235925_1236363_+	TIGR01295, Pediocin_PA-1_biosynthesis_protein_PedC, bacteriocin transport accessory protein, putative	NA|342aa|up_8|NZ_CP048837.1_1236693_1237719_+	cd02809, alpha_hydroxyacid_oxid_FMN, Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes	NA|130aa|up_7|NZ_CP048837.1_1237733_1238123_+	COG0221, Ppa, Inorganic pyrophosphatase [Energy production and conversion]	NA|162aa|up_6|NZ_CP048837.1_1238338_1238824_+	pfam14270, DUF4358, Domain of unknown function (DUF4358)	NA|273aa|up_5|NZ_CP048837.1_1238877_1239696_+	pfam03631, Virul_fac_BrkB, Virulence factor BrkB	NA|439aa|up_4|NZ_CP048837.1_1239717_1241034_+	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]	NA|258aa|up_3|NZ_CP048837.1_1241189_1241963_+	COG2159, COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]	NA|253aa|up_2|NZ_CP048837.1_1245226_1245985_+	NA	NA|666aa|up_1|NZ_CP048837.1_1246833_1248831_+	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]	NA|467aa|up_0|NZ_CP048837.1_1248929_1250330_-	cd02808, GltS_FMN, Glutamate synthase (GltS) FMN-binding domain	NA|390aa|down_0|NZ_CP048837.1_1251468_1252638_+	PRK09276, PRK09276, LL-diaminopimelate aminotransferase; Provisional	NA|201aa|down_1|NZ_CP048837.1_1252634_1253237_+	pfam03575, Peptidase_S51, Peptidase family S51	NA|445aa|down_2|NZ_CP048837.1_1253456_1254791_+	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and    metabolism]	NA|514aa|down_3|NZ_CP048837.1_1254913_1256455_+	PRK00074, guaA, GMP synthase; Reviewed	NA|73aa|down_4|NZ_CP048837.1_1257088_1257307_+	COG3655, COG3655, Predicted transcriptional regulator [Transcription]	NA|287aa|down_5|NZ_CP048837.1_1257338_1258199_+	NA	NA|310aa|down_6|NZ_CP048837.1_1258199_1259129_+	NA	NA|364aa|down_7|NZ_CP048837.1_1259125_1260217_+	pfam08808, RES, RES domain	NA|72aa|down_8|NZ_CP048837.1_1260638_1260854_-	NA	NA|88aa|down_9|NZ_CP048837.1_1261188_1261452_+	NA
GCF_012271835.1_ASM1227183v1	NZ_CP048837	[Clostridium] innocuum strain LC-LUMC-CI-001 chromosome, complete genome	3	3938480-3938782	2,3,2	PILER-CR,CRISPRCasFinder,CRT	no	cas14k	WYL,csa3,cas3,RT,cas14j,c2c9_V-U4,cas14k,DEDDh,DinG,cas5,cas8c,cas7,cas4,cas1,cas2	Unclear	GTCTAGCCTCCCTGAGGCTAGTGGATCTAAAT,GTCTAGCCTCCCTGAGGCTAGTGGATCTAAAT,GTCTAGCCTCCCTGAGGCTAGTGGATCTAAAT	32,32,32	0	0	NA	NA	NA:NA:NA	4,4,4	4	TypeV	WYL,csa3,cas3,RT,cas14j,c2c9_V-U4,cas14k,DEDDh,DinG,cas5,cas8c,cas7,cas4,cas1,cas2	NA,NA|180aa|down_6|NZ_CP048837.1_3948670_3949210_-	NA|223aa|up_9|NZ_CP048837.1_3929556_3930225_-	cd16423, HAD_BPGM-like, uncharacterized subfamily of beta-phosphoglucomutase-like family, similar to uncharacterized Bacillus subtilis YhcW	NA|216aa|up_8|NZ_CP048837.1_3930211_3930859_-	PRK06552, PRK06552, keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional	NA|310aa|up_7|NZ_CP048837.1_3930893_3931823_-	cd12172, PGDH_like_2, Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains	NA|144aa|up_6|NZ_CP048837.1_3931822_3932254_-	cd00006, PTS_IIA_man, PTS_IIA, PTS system, mannose/sorbose specific IIA subunit	NA|169aa|up_5|NZ_CP048837.1_3932250_3932757_-	pfam03830, PTSIIB_sorb, PTS system sorbose subfamily IIB component	NA|287aa|up_4|NZ_CP048837.1_3932775_3933636_-	pfam03613, EIID-AGA, PTS system mannose/fructose/sorbose family IID component	NA|274aa|up_3|NZ_CP048837.1_3933665_3934487_-	pfam03609, EII-Sor, PTS system sorbose-specific iic component	NA|298aa|up_2|NZ_CP048837.1_3934512_3935406_-	PRK09599, PRK09599, NADP-dependent phosphogluconate dehydrogenase	NA|282aa|up_1|NZ_CP048837.1_3935819_3936665_+	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|397aa|up_0|NZ_CP048837.1_3936980_3938171_+	cd14852, LD-carboxypeptidase, L,D-carboxypeptidase DacB and LdcB, and related proteins	NA|625aa|down_0|NZ_CP048837.1_3938892_3940767_-	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA|112aa|down_1|NZ_CP048837.1_3940780_3941116_-	COG3402, COG3402, Uncharacterized conserved protein [Function unknown]	NA|237aa|down_2|NZ_CP048837.1_3942731_3943442_-	cd02910, cupin_Yhhw_N, Escherichia coli YhhW and YhaK and related proteins, pirin-like bicupin, N-terminal cupin domain	NA|287aa|down_3|NZ_CP048837.1_3943734_3944595_-	PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional	NA|358aa|down_4|NZ_CP048837.1_3944594_3945668_-	PRK00591, prfA, peptide chain release factor 1; Validated	NA|759aa|down_5|NZ_CP048837.1_3945983_3948260_-	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon	NA|180aa|down_6|NZ_CP048837.1_3948670_3949210_-	NA	NA|538aa|down_7|NZ_CP048837.1_3949232_3950846_-	PRK10110, PRK10110, PTS maltose transporter subunit IICB	NA|454aa|down_8|NZ_CP048837.1_3950949_3952311_-	cd03888, M20_PepV, M20 Peptidase Xaa-His dipeptidase (PepV) degrades hydrophobic dipeptides	NA|512aa|down_9|NZ_CP048837.1_3952423_3953959_+	COG3711, BglG, Transcriptional antiterminator [Transcription]
