The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP037955	Enterococcus hirae strain CQP3-9 chromosome, complete genome	2695881	1292387	1346107	2695881	tRNA,transposase,lysis	Streptococcus_phage(75.0%)	50	NA	NA
WP_162499548.1|1292387_1293068_-|transposase	IS6 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	90.7	1.6e-116
WP_160232051.1|1293702_1295739_-	penicillin-binding transpeptidase domain-containing protein	NA	NA	NA	NA	NA
WP_002309184.1|1295869_1296754_-	LCP family protein	NA	NA	NA	NA	NA
WP_001015311.1|1296894_1297575_-|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.6	1.5e-127
WP_000662263.1|1297859_1298594_+	class I SAM-dependent methyltransferase	NA	A0A1X9I6N4	Streptococcus_phage	100.0	1.5e-141
WP_002294505.1|1298626_1299490_+	aminoglycoside nucleotidyltransferase ANT(6)-Ia	NA	A0A1X9I6F2	Streptococcus_phage	100.0	8.7e-168
WP_002294507.1|1299533_1300061_+	adenine phosphoribosyltransferase	NA	A0A1X9I6E2	Streptococcus_phage	100.0	1.9e-93
WP_002338419.1|1300288_1301608_+|transposase	IS1380-like element ISSsu5 family transposase	transposase	A0A1X9I6F6	Streptococcus_phage	100.0	1.3e-252
WP_160232046.1|1301798_1303286_+	type IA DNA topoisomerase	NA	A0A1X9I6W8	Streptococcus_phage	99.4	7.0e-274
WP_167844247.1|1303430_1304285_+	ParA family protein	NA	A0A1X9I765	Streptococcus_phage	98.2	7.8e-153
WP_002295735.1|1304383_1304599_+	peptide-binding protein	NA	A0A1X9I6D5	Streptococcus_phage	98.6	1.4e-31
WP_000301765.1|1304615_1304888_+	antitoxin	NA	A0A1X9I6E5	Streptococcus_phage	100.0	5.0e-05
WP_000191454.1|1305405_1306086_-|transposase	IS6-like element ISEnfa1 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	88.5	3.7e-113
WP_001808810.1|1306124_1306289_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000384569.1|1306454_1306652_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_000395511.1|1306641_1307256_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_002346952.1|1307438_1308356_+	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	43.2	4.6e-42
WP_112080986.1|1308348_1309098_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_086321365.1|1309097_1309925_+	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA	NA
WP_162499548.1|1310132_1310813_-|transposase	IS6 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	90.7	1.6e-116
WP_010719121.1|1310915_1311731_+	1,4-dihydroxy-2-naphthoyl-CoA synthase	NA	NA	NA	NA	NA
WP_167844248.1|1311705_1313202_+	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	33.1	2.2e-65
WP_160231701.1|1314541_1316290_+	2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase	NA	NA	NA	NA	NA
WP_160231702.1|1317036_1318149_+	o-succinylbenzoate synthase	NA	NA	NA	NA	NA
WP_160231703.1|1318481_1320251_+	alpha-glycosidase	NA	NA	NA	NA	NA
WP_160231764.1|1320328_1321609_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010719129.1|1322002_1323301_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010719130.1|1323304_1324156_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_160231704.1|1324168_1324984_+	maltodextrose utilization protein MalA	NA	NA	NA	NA	NA
WP_010719132.1|1325133_1326300_+	class I SAM-dependent methyltransferase	NA	A0A2K9L4K8	Tupanvirus	40.4	2.9e-49
WP_160231705.1|1326350_1326521_+	hypothetical protein	NA	NA	NA	NA	NA
WP_160231706.1|1327038_1328214_+	proline reductase-associated electron transfer protein PrdC	NA	NA	NA	NA	NA
WP_160231707.1|1328357_1330253_+	D-proline reductase (dithiol) proprotein PrdA	NA	NA	NA	NA	NA
WP_010719135.1|1330266_1330575_+	hypothetical protein	NA	NA	NA	NA	NA
WP_080292465.1|1330575_1331301_+	D-proline reductase (dithiol) protein PrdB	NA	NA	NA	NA	NA
WP_160231708.1|1331313_1332051_+	proline reductase cluster protein PrdD	NA	NA	NA	NA	NA
WP_160231709.1|1332072_1332552_+	proline reductase	NA	NA	NA	NA	NA
WP_160231710.1|1332565_1333582_+	proline racemase	NA	NA	NA	NA	NA
WP_010737601.1|1333698_1334571_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_080704582.1|1334770_1335802_+	selenide, water dikinase SelD	NA	NA	NA	NA	NA
WP_160231711.1|1335871_1336471_+	sulfurtransferase-like selenium metabolism protein YedF	NA	NA	NA	NA	NA
WP_010737598.1|1336481_1336739_+	DUF3343 domain-containing protein	NA	NA	NA	NA	NA
WP_160231712.1|1338646_1339771_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_160231713.1|1339785_1341186_+|tRNA	L-seryl-tRNA(Sec) selenium transferase	tRNA	NA	NA	NA	NA
WP_160231714.1|1341182_1341683_+	hypothetical protein	NA	NA	NA	NA	NA
WP_160231715.1|1341675_1342218_+	ECF transporter S component	NA	NA	NA	NA	NA
WP_160231765.1|1342849_1343728_+	ATP-binding cassette domain-containing protein	NA	G3M9Y6	Bacillus_virus	32.5	1.7e-22
WP_160231716.1|1343720_1344374_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_160231717.1|1344386_1345235_+	hypothetical protein	NA	NA	NA	NA	NA
WP_160231718.1|1345474_1346107_+|lysis	lysis protein	lysis	NA	NA	NA	NA
>prophage 2
NZ_CP037955	Enterococcus hirae strain CQP3-9 chromosome, complete genome	2695881	1570880	1579939	2695881		Prochlorococcus_phage(33.33%)	9	NA	NA
WP_160231978.1|1570880_1571474_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	34.0	6.2e-24
WP_010719380.1|1571470_1572514_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.2	1.1e-63
WP_160231979.1|1572527_1573970_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	32.7	1.1e-50
WP_010719382.1|1573954_1576177_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	41.5	1.2e-147
WP_160231980.1|1576178_1576850_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
WP_010737437.1|1576851_1577106_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_088775548.1|1577120_1577837_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	E3SPA9	Prochlorococcus_phage	42.8	1.7e-47
WP_088775549.1|1578097_1578475_+	hypothetical protein	NA	NA	NA	NA	NA
WP_088775550.1|1578631_1579939_-	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	27.3	6.2e-16
>prophage 3
NZ_CP037955	Enterococcus hirae strain CQP3-9 chromosome, complete genome	2695881	1618769	1723109	2695881	tRNA,plate,portal,terminase,transposase,head,capsid,protease,tail,holin,integrase	Enterococcus_phage(35.42%)	112	1668177:1668202	1703772:1703797
WP_160231844.1|1618769_1620473_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L6B6	Tupanvirus	24.1	5.2e-07
WP_010718876.1|1620542_1621811_-|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_160231843.1|1622195_1622996_-	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_088775472.1|1622992_1623802_-	isoprenyl transferase	NA	R9W0U9	Flavobacterium_phage	46.0	2.0e-25
WP_010718873.1|1624031_1624589_-	ribosome recycling factor	NA	NA	NA	NA	NA
WP_010718872.1|1624592_1625315_-	UMP kinase	NA	NA	NA	NA	NA
WP_010718871.1|1625536_1626418_-	elongation factor Ts	NA	NA	NA	NA	NA
WP_010718870.1|1626514_1627297_-	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_010737782.1|1627684_1628164_+	ArgR family transcriptional regulator	NA	NA	NA	NA	NA
WP_034698338.1|1628314_1630006_-|tRNA	arginine--tRNA ligase	tRNA	A0A2I2L3K1	Orpheovirus	33.4	9.0e-76
WP_160231842.1|1630422_1631373_-	carbamate kinase	NA	NA	NA	NA	NA
WP_010718866.1|1631489_1632509_-	ornithine carbamoyltransferase	NA	NA	NA	NA	NA
WP_088775474.1|1632597_1633827_-	arginine deiminase	NA	NA	NA	NA	NA
WP_010718864.1|1634300_1635002_+	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA	NA
WP_123874699.1|1635094_1635883_-	glycosyltransferase family 2 protein	NA	A0A0F7L2F7	uncultured_marine_virus	32.8	7.0e-07
WP_025480509.1|1639146_1639815_-	CpsD/CapB family tyrosine-protein kinase	NA	A0A1X9I5D6	Streptococcus_phage	36.1	2.9e-22
WP_160231841.1|1639843_1640641_-	tyrosine protein kinase	NA	NA	NA	NA	NA
WP_160231840.1|1640660_1641515_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010718857.1|1641727_1642396_-	class D sortase	NA	NA	NA	NA	NA
WP_160231839.1|1642427_1643009_-	hypothetical protein	NA	NA	NA	NA	NA
WP_088775727.1|1643502_1644531_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	41.1	1.1e-60
WP_063627253.1|1644527_1644995_-	ribosomal protein S18-alanine N-acetyltransferase	NA	NA	NA	NA	NA
WP_010737793.1|1645004_1645544_-	ribosomal protein S18-alanine N-acetyltransferase	NA	NA	NA	NA	NA
WP_160231838.1|1645527_1646250_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	tRNA	NA	NA	NA	NA
WP_160231837.1|1646381_1647362_-	substrate-binding domain-containing protein	NA	C6ZCU4	Enterobacteria_phage	28.0	4.9e-18
WP_160231836.1|1647400_1648885_-	UDP-glucose--hexose-1-phosphate uridylyltransferase	NA	NA	NA	NA	NA
WP_034698360.1|1648892_1649882_-	UDP-glucose 4-epimerase GalE	NA	A0A2K9L5H6	Tupanvirus	37.9	1.8e-52
WP_010718848.1|1650115_1650283_+	DUF3042 family protein	NA	NA	NA	NA	NA
WP_160231835.1|1650409_1652227_-	FAD/NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_025480161.1|1652223_1652589_-	DUF488 domain-containing protein	NA	NA	NA	NA	NA
WP_160231834.1|1652739_1653450_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010737800.1|1653885_1654281_-	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
WP_010718843.1|1654295_1655261_-	ROK family glucokinase	NA	NA	NA	NA	NA
WP_010718842.1|1655260_1655473_-	YqgQ family protein	NA	NA	NA	NA	NA
WP_063627259.1|1655493_1656192_-|protease	rhomboid family intramembrane serine protease	protease	NA	NA	NA	NA
WP_088775699.1|1656205_1656751_-	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
WP_088775698.1|1657112_1658108_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_025480160.1|1658104_1659094_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_167844235.1|1659090_1659897_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	31.7	6.5e-16
WP_088775696.1|1660066_1661023_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010718835.1|1661101_1661605_-	dihydrofolate reductase	NA	A0A076GDN3	Bacillus_phage	38.6	1.0e-19
WP_002296119.1|1661772_1661922_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_053766725.1|1662143_1662590_+	DUF2188 domain-containing protein	NA	NA	NA	NA	NA
WP_053766724.1|1662697_1664593_-	asparagine synthase (glutamine-hydrolyzing)	NA	F2Y2L7	Organic_Lake_phycodnavirus	26.5	3.2e-21
WP_160231833.1|1665182_1666130_+	glycosyltransferase	NA	V5USA4	Oenococcus_phage	50.5	4.7e-82
WP_167844249.1|1666208_1667207_-	hypothetical protein	NA	NA	NA	NA	NA
1668177:1668202	attL	TGGTATATAAGGAAGGTACAGGATTT	NA	NA	NA	NA
WP_160231832.1|1668408_1669425_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A1G5SA77	Enterococcus_phage	65.9	2.0e-62
WP_002314481.1|1669435_1669633_-|holin	holin	holin	A0A0S2MYF6	Enterococcus_phage	87.5	3.5e-24
WP_002333071.1|1669656_1669950_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002331002.1|1669987_1670125_-	XkdX family protein	NA	NA	NA	NA	NA
WP_160231831.1|1670126_1670573_-	hypothetical protein	NA	NA	NA	NA	NA
WP_160231830.1|1670584_1672696_-|plate	BppU family phage baseplate upper protein	plate	A0A249XZH9	Enterococcus_phage	52.1	1.3e-87
WP_113803700.1|1672695_1673745_-	hypothetical protein	NA	A0A0B5D0C2	Listeria_phage	27.0	1.9e-20
WP_113803699.1|1673744_1674764_-	hypothetical protein	NA	Q9T1A5	Listeria_phage	54.7	8.5e-106
WP_160231829.1|1674772_1675603_-|tail	phage tail family protein	tail	A0A059T6D8	Listeria_phage	42.0	2.9e-51
WP_160231828.1|1675613_1679462_-	tape measure protein	NA	A0A0M5M3L4	Enterococcus_phage	73.8	0.0e+00
WP_010726038.1|1679461_1679653_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002335843.1|1679676_1679988_-	hypothetical protein	NA	A0A0M4R2F4	Enterococcus_phage	46.7	2.3e-14
WP_160231827.1|1680112_1680673_-|tail	phage tail protein	tail	A0A249XUT9	Enterococcus_phage	45.7	2.0e-40
WP_104771159.1|1680688_1681060_-	hypothetical protein	NA	A0A060ANH4	Enterococcus_phage	47.0	8.6e-24
WP_002290643.1|1681056_1681452_-	hypothetical protein	NA	A0A0M5M1E5	Enterococcus_phage	41.7	5.8e-18
WP_010726036.1|1681448_1681784_-|head	phage head closure protein	head	C0LZZ3	Enterococcus_phage	42.3	1.9e-17
WP_002333639.1|1681761_1682046_-|head,tail	phage gp6-like head-tail connector protein	head,tail	V5US31	Enterococcus_phage	48.9	1.0e-16
WP_160231849.1|1682057_1682315_-	Ig domain-containing protein	NA	A5GYM0	Lactococcus_phage	57.9	6.2e-13
WP_160231826.1|1682311_1683493_-|capsid	phage major capsid protein	capsid	A0A0S2SXJ6	Bacillus_phage	55.6	1.7e-81
WP_033607246.1|1683532_1684078_-|head,protease	HK97 family phage prohead protease	head,protease	A0A0M4R4P2	Enterococcus_phage	59.8	4.8e-55
WP_002333642.1|1684025_1685210_-|portal	phage portal protein	portal	V5US36	Enterococcus_phage	43.1	6.7e-78
WP_010706196.1|1687101_1688157_-	hypothetical protein	NA	NA	NA	NA	NA
WP_160231825.1|1688212_1688686_-|terminase	phage terminase small subunit P27 family	terminase	V5UQR4	Enterococcus_phage	55.0	9.0e-42
WP_025480966.1|1688851_1689226_-	HNH endonuclease	NA	C0M003	Enterococcus_phage	55.8	5.1e-32
WP_010726031.1|1689218_1689419_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002332446.1|1689415_1689646_-	hypothetical protein	NA	NA	NA	NA	NA
WP_088745681.1|1690260_1690677_-	autolysin	NA	C9E2P5	Enterococcus_phage	67.4	1.4e-46
WP_160231824.1|1690753_1691050_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010726208.1|1691046_1691250_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002343501.1|1691256_1691487_-	hypothetical protein	NA	A0A0S2MYD2	Enterococcus_phage	53.5	5.5e-13
WP_002343590.1|1691512_1691794_-	hypothetical protein	NA	NA	NA	NA	NA
WP_104876582.1|1692137_1692449_-	hypothetical protein	NA	D2IZY1	Enterococcus_phage	73.7	1.2e-34
WP_160231823.1|1692448_1692754_-	hypothetical protein	NA	NA	NA	NA	NA
WP_160231822.1|1692750_1692912_-	antitoxin	NA	NA	NA	NA	NA
WP_010726594.1|1692908_1693226_-	VRR-NUC domain-containing protein	NA	A0A1P8VVL5	Streptococcus_phage	61.9	5.8e-29
WP_160231821.1|1693540_1695877_-	DNA primase	NA	Q9T0Y1	Lactobacillus_phage	50.7	7.2e-225
WP_160231820.1|1695876_1696383_-	DUF669 domain-containing protein	NA	A8ATF2	Listeria_phage	44.6	3.3e-34
WP_160231819.1|1696400_1697924_-	DEAD/DEAH box helicase family protein	NA	Q9T0Y3	Lactobacillus_phage	47.9	8.0e-108
WP_010721532.1|1697895_1698606_-	AAA family ATPase	NA	A8YQL5	Lactobacillus_phage	66.1	3.7e-84
WP_002347058.1|1698618_1699098_-	siphovirus Gp157 family protein	NA	E5DV79	Deep-sea_thermophilic_phage	49.0	3.1e-34
WP_002350675.1|1699030_1699348_-	hypothetical protein	NA	NA	NA	NA	NA
WP_167844236.1|1699407_1699584_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002323902.1|1699632_1699893_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010722962.1|1700032_1700236_-	hypothetical protein	NA	NA	NA	NA	NA
WP_160231818.1|1700250_1701030_-	phage antirepressor	NA	A0A1Q1PVU2	Staphylococcus_phage	54.3	3.1e-71
WP_010722960.1|1701053_1701278_-	DUF739 family protein	NA	A0A141E1D4	Streptococcus_phage	70.4	7.0e-21
WP_010777088.1|1701437_1702139_+	helix-turn-helix domain-containing protein	NA	U5U470	Staphylococcus_phage	45.3	1.3e-49
WP_002306332.1|1702215_1702422_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002343600.1|1702525_1703674_+|integrase	site-specific integrase	integrase	A0A1S5S7K9	Streptococcus_phage	38.9	1.6e-68
WP_010737811.1|1704064_1704631_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
1703772:1703797	attR	TGGTATATAAGGAAGGTACAGGATTT	NA	NA	NA	NA
WP_010718770.1|1706177_1706519_+	hypothetical protein	NA	NA	NA	NA	NA
WP_088744940.1|1706932_1707529_+	TVP38/TMEM64 family protein	NA	M1Q152	Streptococcus_phage	41.7	2.5e-33
WP_034698405.1|1707621_1709424_+	glycerophosphodiester phosphodiesterase	NA	A0A173GBD0	Staphylococcus_phage	27.6	2.2e-11
WP_010737815.1|1709646_1709865_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010718765.1|1710321_1710471_+	hypothetical protein	NA	NA	NA	NA	NA
WP_160231817.1|1710562_1712347_-	glucosyltransferase	NA	NA	NA	NA	NA
WP_160231816.1|1712813_1713635_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010737819.1|1714398_1714671_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010718761.1|1714883_1715297_-	DUF4231 domain-containing protein	NA	NA	NA	NA	NA
WP_081123338.1|1716780_1717473_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010718759.1|1717887_1718220_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_002287105.1|1719063_1720038_-	choloylglycine hydrolase family protein	NA	M1HVK5	Paramecium_bursaria_Chlorella_virus	31.8	5.4e-25
WP_002295273.1|1720200_1720458_+	hypothetical protein	NA	NA	NA	NA	NA
WP_008266934.1|1720689_1721103_-	DUF4231 domain-containing protein	NA	NA	NA	NA	NA
WP_167844237.1|1721543_1721963_+	hypothetical protein	NA	NA	NA	NA	NA
WP_086956687.1|1721946_1723109_-|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	51.3	1.6e-79
>prophage 4
NZ_CP037955	Enterococcus hirae strain CQP3-9 chromosome, complete genome	2695881	2000510	2008226	2695881		Streptococcus_phage(66.67%)	10	NA	NA
WP_160232000.1|2000510_2000771_-	hypothetical protein	NA	A0A0S2MYI8	Enterococcus_phage	52.6	5.3e-12
WP_010718684.1|2000915_2001782_-	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	63.0	8.6e-91
WP_010718685.1|2002322_2002667_-	DNA replication initiation control protein YabA	NA	M1PFV3	Streptococcus_phage	41.4	2.9e-18
WP_010738041.1|2002659_2003484_-	stage 0 sporulation family protein	NA	NA	NA	NA	NA
WP_010718687.1|2003519_2004461_-	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	32.3	3.4e-32
WP_010718688.1|2004469_2004799_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010718689.1|2004813_2005458_-	dTMP kinase	NA	M1PSC7	Streptococcus_phage	52.2	3.5e-57
WP_010718690.1|2005521_2006118_-	recombination protein RecR	NA	NA	NA	NA	NA
WP_010718691.1|2006141_2006453_-	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_088774991.1|2006477_2008226_-	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	41.9	9.3e-52
>prophage 5
NZ_CP037955	Enterococcus hirae strain CQP3-9 chromosome, complete genome	2695881	2312588	2364483	2695881	transposase,integrase	Streptococcus_phage(20.0%)	50	2299719:2299735	2342966:2342982
2299719:2299735	attL	AAAAGATAGATACTGAC	NA	NA	NA	NA
WP_167844241.1|2312588_2313269_+|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	98.7	4.9e-126
WP_160232054.1|2313619_2314204_+	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	52.8	6.9e-44
WP_160232053.1|2314181_2315609_+|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	NA	NA	NA	NA
WP_010722985.1|2317111_2318245_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A1V0SAG5	Catovirus	27.5	1.1e-26
WP_160232022.1|2318254_2319670_-	oligosaccharide flippase family protein	NA	NA	NA	NA	NA
WP_160232023.1|2319666_2320779_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_160232025.1|2320781_2321948_-	nucleotide sugar dehydrogenase	NA	M1HV26	Paramecium_bursaria_Chlorella_virus	49.9	8.5e-102
WP_160232024.1|2322039_2323182_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_101735374.1|2323333_2324638_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010724610.1|2324761_2325826_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_101735373.1|2325842_2326598_-	WecB/TagA/CpsF family glycosyltransferase	NA	NA	NA	NA	NA
WP_025480423.1|2326600_2327290_-	sugar transferase	NA	NA	NA	NA	NA
WP_113803779.1|2327353_2328118_-	tyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_113803780.1|2328145_2328844_-	CpsD/CapB family tyrosine-protein kinase	NA	A0A1X9I5D6	Streptococcus_phage	38.0	1.1e-27
WP_002326287.1|2328855_2329635_-	tyrosine protein kinase	NA	NA	NA	NA	NA
WP_002294932.1|2329650_2330595_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_113803781.1|2330640_2331420_-	hypothetical protein	NA	NA	NA	NA	NA
WP_160232037.1|2332731_2333163_-	HicB family protein	NA	F0PIL2	Enterococcus_phage	66.4	6.7e-44
WP_002295613.1|2333473_2333653_-	hypothetical protein	NA	NA	NA	NA	NA
WP_160232036.1|2334032_2334740_-	hypothetical protein	NA	NA	NA	NA	NA
WP_160232035.1|2334732_2334921_-	hypothetical protein	NA	NA	NA	NA	NA
WP_160232034.1|2334978_2335170_-	hypothetical protein	NA	NA	NA	NA	NA
WP_160232033.1|2335185_2335437_-	hypothetical protein	NA	NA	NA	NA	NA
WP_160232032.1|2335436_2335643_-	DNA helicase UvrA	NA	NA	NA	NA	NA
WP_160232031.1|2336089_2336296_-	hypothetical protein	NA	A0A0S2MYI8	Enterococcus_phage	55.2	4.8e-08
WP_002305045.1|2337602_2338079_-	PTS glucose transporter subunit IIA	NA	NA	NA	NA	NA
WP_088775768.1|2338091_2339594_-	PTS transporter subunit EIIC	NA	NA	NA	NA	NA
WP_160232030.1|2339606_2340296_-	putative N-acetylmannosamine-6-phosphate 2-epimerase	NA	NA	NA	NA	NA
WP_081125614.1|2340460_2341279_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_081125613.1|2341319_2341559_-	hypothetical protein	NA	NA	NA	NA	NA
WP_053765601.1|2342587_2343640_-	FUSC family protein	NA	NA	NA	NA	NA
2342966:2342982	attR	AAAAGATAGATACTGAC	NA	NA	NA	NA
WP_167844242.1|2344878_2346041_-|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	50.9	4.6e-79
WP_002342290.1|2346605_2347010_+	hypothetical protein	NA	NA	NA	NA	NA
WP_033585900.1|2347019_2347289_+	hypothetical protein	NA	NA	NA	NA	NA
WP_167844243.1|2347325_2347823_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_002332708.1|2347878_2348787_-|transposase	IS982-like element ISEfm1 family transposase	transposase	NA	NA	NA	NA
WP_160232043.1|2349266_2350058_-	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA	NA
WP_160232044.1|2350220_2350883_-	DUF998 domain-containing protein	NA	NA	NA	NA	NA
WP_002291912.1|2351148_2352201_-	PTS sugar transporter subunit IIC	NA	NA	NA	NA	NA
WP_002291914.1|2352213_2353152_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_010728617.1|2353602_2354238_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002296569.1|2354337_2354847_-	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	34.8	2.8e-17
WP_002294754.1|2355163_2355727_-	restriction endonuclease subunit S	NA	NA	NA	NA	NA
WP_043902404.1|2355741_2356785_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002292291.1|2356917_2357322_-	organic hydroperoxide resistance protein	NA	NA	NA	NA	NA
WP_002292290.1|2357521_2357770_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_080306250.1|2359265_2359658_-	hypothetical protein	NA	NA	NA	NA	NA
WP_043902408.1|2360085_2360778_-	hypothetical protein	NA	NA	NA	NA	NA
WP_126305266.1|2361082_2362276_-|transposase	IS256 family transposase	transposase	NA	NA	NA	NA
WP_167844242.1|2363321_2364483_+|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	50.9	4.6e-79
>prophage 1
NZ_CP037956	Enterococcus hirae strain CQP3-9 plasmid pCQP3-9_1, complete sequence	125915	25603	32540	125915	transposase	Clostridium_phage(28.57%)	8	NA	NA
WP_002292150.1|25603_26176_-	DNA starvation/stationary phase protection protein	NA	A0A0A7RTZ1	Clostridium_phage	42.6	3.9e-23
WP_002340319.1|26646_27261_+	recombinase family protein	NA	M9Q1K0	Clostridium_phage	33.8	3.1e-18
WP_002293769.1|27311_28415_-	Abi family protein	NA	A0A1S5S8T0	Streptococcus_phage	23.7	6.6e-11
WP_002325565.1|28904_29585_-|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.1	1.3e-126
WP_126333312.1|29612_30134_-	S8 family serine peptidase	NA	A0A217EQY2	Bacillus_phage	34.2	2.3e-14
WP_002295679.1|30145_30874_-	peptidase	NA	A0A1B0T6A2	Bacillus_phage	26.1	3.1e-09
WP_002292681.1|31133_31682_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002292680.1|31682_32540_-	ParA family protein	NA	F0PIG8	Enterococcus_phage	30.7	8.1e-33
>prophage 2
NZ_CP037956	Enterococcus hirae strain CQP3-9 plasmid pCQP3-9_1, complete sequence	125915	81533	112329	125915	transposase,integrase	Streptococcus_phage(37.5%)	26	105260:105280	123647:123667
WP_013646119.1|81533_82214_+|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.1	5.8e-127
WP_160232021.1|83389_84301_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_160232020.1|84312_85194_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_160232019.1|85211_86813_+	sugar ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_160232018.1|86872_87469_+	DUF624 domain-containing protein	NA	NA	NA	NA	NA
WP_160232017.1|87458_88343_+	acetylxylan esterase	NA	NA	NA	NA	NA
WP_160232016.1|88356_89118_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_160232015.1|89127_91275_+	beta-glucosidase BglX	NA	NA	NA	NA	NA
WP_160232014.1|91291_94591_+	cellobiose phosphorylase	NA	NA	NA	NA	NA
WP_160232013.1|94618_95575_+	LacI family DNA-binding transcriptional regulator	NA	C6ZCU4	Enterobacteria_phage	24.8	7.2e-22
WP_160232012.1|95591_96350_+	esterase family protein	NA	NA	NA	NA	NA
WP_160232011.1|96817_97015_+	CsbD family protein	NA	NA	NA	NA	NA
WP_160232010.1|97226_97781_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001240982.1|97800_100719_-|transposase	Tn3 family transposase	transposase	A0A1B0V7H9	Salmonella_phage	36.1	1.1e-169
WP_000576156.1|100722_101277_-	recombinase family protein	NA	A0A0F7LA37	Escherichia_phage	52.1	2.3e-36
WP_002292226.1|101631_102369_-	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B)	NA	E4ZFQ0	Streptococcus_phage	99.6	1.4e-134
WP_031929417.1|102493_102577_-	23S rRNA methyltransferase attenuator leader peptide ErmL	NA	NA	NA	NA	NA
WP_160232057.1|102911_103943_-|transposase	transposase	transposase	NA	NA	NA	NA
105260:105280	attL	AGGGTTCTGTTGCAAAGTTTT	NA	NA	NA	NA
WP_010710189.1|105315_105996_-|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	98.7	4.9e-126
WP_002307501.1|106731_107139_-	type II toxin-antitoxin system death-on-curing family toxin	NA	A0A0N9SKD8	Staphylococcus_phage	39.8	8.0e-15
WP_002295764.1|107135_107369_-	addiction module antitoxin	NA	NA	NA	NA	NA
WP_002295762.1|107690_108776_+	tyrosine recombinase XerS	NA	NA	NA	NA	NA
WP_002318477.1|108838_109393_-|integrase	tyrosine-type recombinase/integrase	integrase	W8CYP1	Bacillus_phage	46.1	8.6e-36
WP_002325581.1|110135_110831_+	histidinol phosphate phosphatase HisJ family protein	NA	NA	NA	NA	NA
WP_002308046.1|110867_111365_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_002332990.1|111420_112329_-|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
123647:123667	attR	AAAACTTTGCAACAGAACCCT	NA	NA	NA	NA
>prophage 1
NZ_CP037957	Enterococcus hirae strain CQP3-9 plasmid pCQP3-9_2, complete sequence	33132	0	6717	33132	transposase	Streptococcus_phage(100.0%)	5	NA	NA
WP_112080982.1|1518_2895_+	tetracycline efflux MFS transporter Tet(L)	NA	NA	NA	NA	NA
WP_167844252.1|3389_3755_+	hypothetical protein	NA	NA	NA	NA	NA
WP_025191971.1|4965_5316_+	protein rep	NA	NA	NA	NA	NA
WP_167844254.1|5349_6012_-|transposase	IS6 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.5	1.1e-117
WP_013646119.1|6036_6717_-|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.1	5.8e-127
>prophage 2
NZ_CP037957	Enterococcus hirae strain CQP3-9 plasmid pCQP3-9_2, complete sequence	33132	10339	20503	33132	transposase	Streptococcus_phage(33.33%)	8	NA	NA
WP_013330744.1|10339_10597_-|transposase	transposase	transposase	A0A1P8CWP5	Bacillus_phage	52.4	9.5e-14
WP_125276271.1|10733_11264_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001240982.1|11927_14846_-|transposase	Tn3 family transposase	transposase	A0A1B0V7H9	Salmonella_phage	36.1	1.1e-169
WP_000576156.1|14849_15404_-	recombinase family protein	NA	A0A0F7LA37	Escherichia_phage	52.1	2.3e-36
WP_002292226.1|15758_16496_-	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B)	NA	E4ZFQ0	Streptococcus_phage	99.6	1.4e-134
WP_031929417.1|16620_16704_-	23S rRNA methyltransferase attenuator leader peptide ErmL	NA	NA	NA	NA	NA
WP_002415638.1|17268_18897_-	ABC-F type ribosomal protection protein PoxtA	NA	A0A2K9L0W2	Tupanvirus	28.7	5.4e-46
WP_013646119.1|19822_20503_-|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.1	5.8e-127
>prophage 3
NZ_CP037957	Enterococcus hirae strain CQP3-9 plasmid pCQP3-9_2, complete sequence	33132	24786	32161	33132	transposase	Streptococcus_phage(50.0%)	8	NA	NA
WP_000429439.1|24786_25740_+	ParA family protein	NA	F0PIG8	Enterococcus_phage	26.1	7.7e-16
WP_001196543.1|25711_25987_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001015311.1|26214_26895_+|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.6	1.5e-127
WP_000222577.1|27022_27982_+|transposase	IS30-like element IS1252 family transposase	transposase	W5R8L2	Staphylococcus_phage	35.1	2.4e-33
WP_000170424.1|28414_28987_-	recombinase family protein	NA	A0A1J1J8Z4	Escherichia_phage	46.0	6.8e-36
WP_000599739.1|29002_29608_-	cell filamentation protein	NA	NA	NA	NA	NA
WP_167844253.1|29805_30487_-|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.1	2.9e-126
WP_001224319.1|31228_32161_+	conjugal transfer protein	NA	A0A1S5SF22	Streptococcus_phage	100.0	1.1e-171
