assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_012221805.1_ASM1222180v1	NZ_CP015195	Pasteurellaceae bacterium RH1A chromosome, complete genome	1	384092-385911	1,1,1	CRT,CRISPRCasFinder,PILER-CR	no	cas2,cas1,cas9	cas2,cas1,cas9,DEDDh,csa3,DinG,PD-DExK,WYL	Type II-A,Type II-C,Type II-B, or Type II-C?, Type II-B	GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT,GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT,GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT	36,36,36	0	0	NA	NA	NA:NA:NA	27,26,16	27	TypeII-A,TypeII-C,TypeII-B,orTypeII-C?,TypeII-B	cas2,cas1,cas9,DEDDh,csa3,DinG,PD-DExK,WYL	NA,NA	NA|173aa|up_9|NZ_CP015195.1_368836_369355_-	PRK05456, PRK05456, ATP-dependent protease subunit HslV	NA|444aa|up_8|NZ_CP015195.1_369616_370948_+	PRK14862, rimO, 30S ribosomal protein S12 methylthiotransferase RimO	NA|692aa|up_7|NZ_CP015195.1_370967_373043_+	pfam18254, HMw1_D2, HMW1 domain 2	NA|886aa|up_6|NZ_CP015195.1_373513_376171_+	PRK09405, aceE, pyruvate dehydrogenase subunit E1; Reviewed	NA|637aa|up_5|NZ_CP015195.1_376275_378186_+	PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated	NA|475aa|up_4|NZ_CP015195.1_378315_379740_+	PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed	NA|304aa|up_3|NZ_CP015195.1_379781_380693_-	PRK05441, murQ, N-acetylmuramic acid-6-phosphate etherase; Reviewed	NA|317aa|up_2|NZ_CP015195.1_380766_381717_+	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed	NA|451aa|up_1|NZ_CP015195.1_381878_383231_+	cd17345, MFS_GlpT, Glycerol-3-Phosphate Transporter of the Major Facilitator Superfamily of transporters	NA|213aa|up_0|NZ_CP015195.1_383423_384062_+	PRK05718, PRK05718, keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional	cas2|109aa|down_0|NZ_CP015195.1_386215_386542_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|305aa|down_1|NZ_CP015195.1_386534_387449_-	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas9|1060aa|down_2|NZ_CP015195.1_387533_390713_-	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	NA|210aa|down_3|NZ_CP015195.1_396891_397521_-	COG0625, Gst, Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]	NA|460aa|down_4|NZ_CP015195.1_397672_399052_+	PRK10504, PRK10504, putative transporter; Provisional	NA|385aa|down_5|NZ_CP015195.1_399115_400270_+	COG1858, MauG, Cytochrome c peroxidase [Inorganic ion transport and metabolism]	NA|648aa|down_6|NZ_CP015195.1_400420_402364_+	cd07185, OmpA_C-like, Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA	NA|91aa|down_7|NZ_CP015195.1_402420_402693_-	COG2168, DsrH, Uncharacterized conserved protein involved in oxidation of intracellular sulfur [Inorganic ion transport and metabolism]	NA|122aa|down_8|NZ_CP015195.1_402692_403058_-	TIGR03010, sulf_tusC_dsrF, sulfur relay protein TusC/DsrF	NA|126aa|down_9|NZ_CP015195.1_403061_403439_-	PRK00207, PRK00207, sulfurtransferase complex subunit TusD
GCF_012221805.1_ASM1222180v1	NZ_CP015195	Pasteurellaceae bacterium RH1A chromosome, complete genome	2	585656-585733	2	CRISPRCasFinder	no		cas2,cas1,cas9,DEDDh,csa3,DinG,PD-DExK,WYL	Orphan	CCGCTTGTGTTTGTCACCAGCCT	23	0	0	NA	NA	NA	1	1	Orphan	cas2,cas1,cas9,DEDDh,csa3,DinG,PD-DExK,WYL	NA,NA|123aa|down_0|NZ_CP015195.1_585779_586148_+	NA|254aa|up_9|NZ_CP015195.1_575447_576209_-	PRK11178, PRK11178, uridine phosphorylase; Provisional	NA|158aa|up_8|NZ_CP015195.1_576442_576916_-	PRK11179, PRK11179, DNA-binding transcriptional regulator AsnC; Provisional	NA|331aa|up_7|NZ_CP015195.1_577086_578079_+	COG2502, AsnA, Asparagine synthetase A [Amino acid transport and metabolism]	NA|321aa|up_6|NZ_CP015195.1_578205_579168_-	PRK00035, hemH, ferrochelatase; Reviewed	NA|40aa|up_5|NZ_CP015195.1_579469_579589_+	pfam13627, LPAM_2, Prokaryotic lipoprotein-attachment site	NA|417aa|up_4|NZ_CP015195.1_579600_580851_+	TIGR01048, Diaminopimelate_decarboxylase, diaminopimelate decarboxylase	NA|143aa|up_3|NZ_CP015195.1_581034_581463_-	COG2510, COG2510, Predicted membrane protein [Function unknown]	NA|337aa|up_2|NZ_CP015195.1_581614_582625_-	PRK09478, mglC, galactose/methyl galactoside ABC transporter permease MglC	NA|509aa|up_1|NZ_CP015195.1_582640_584167_-	PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional	NA|330aa|up_0|NZ_CP015195.1_584334_585324_-	PRK15395, PRK15395, galactose/glucose ABC transporter substrate-binding protein MglB	NA|123aa|down_0|NZ_CP015195.1_585779_586148_+	NA	NA|477aa|down_1|NZ_CP015195.1_586404_587835_+	PRK14325, PRK14325, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional	NA|203aa|down_2|NZ_CP015195.1_588087_588696_+	pfam04391, DUF533, Protein of unknown function (DUF533)	NA|202aa|down_3|NZ_CP015195.1_588764_589370_-	PRK00116, ruvA, Holliday junction branch migration protein RuvA	NA|552aa|down_4|NZ_CP015195.1_589530_591186_+	PRK08978, PRK08978, acetolactate synthase 2 catalytic subunit; Reviewed	NA|76aa|down_5|NZ_CP015195.1_591185_591413_+	PRK11152, ilvM, acetolactate synthase 2 small subunit	NA|613aa|down_6|NZ_CP015195.1_591561_593400_+	PRK12448, PRK12448, dihydroxy-acid dehydratase; Provisional	NA|138aa|down_7|NZ_CP015195.1_593502_593916_+	pfam05656, DUF805, Protein of unknown function (DUF805)	NA|208aa|down_8|NZ_CP015195.1_593922_594546_+	PRK00454, engB, GTP-binding protein YsxC; Reviewed	NA|141aa|down_9|NZ_CP015195.1_594547_594970_+	PRK11191, PRK11191, ribonuclease E inhibitor RraB
GCF_012221805.1_ASM1222180v1	NZ_CP015195	Pasteurellaceae bacterium RH1A chromosome, complete genome	3	1536094-1536199	3	CRISPRCasFinder	no		cas2,cas1,cas9,DEDDh,csa3,DinG,PD-DExK,WYL	Orphan	GCGAGGACGCTGGCGCCATCAAGG	24	0	0	NA	NA	NA	1	1	Orphan	cas2,cas1,cas9,DEDDh,csa3,DinG,PD-DExK,WYL	NA,NA	NA|194aa|up_9|NZ_CP015195.1_1524818_1525400_+	pfam07273, DUF1439, Protein of unknown function (DUF1439)	NA|439aa|up_8|NZ_CP015195.1_1526286_1527603_+	PRK10879, PRK10879, proline aminopeptidase P II; Provisional	NA|264aa|up_7|NZ_CP015195.1_1527727_1528519_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|241aa|up_6|NZ_CP015195.1_1528616_1529339_+	PRK10955, PRK10955, envelope stress response regulator transcription factor CpxR	NA|462aa|up_5|NZ_CP015195.1_1529388_1530774_+	PRK09470, cpxA, envelope stress sensor histidine kinase CpxA	NA|233aa|up_4|NZ_CP015195.1_1530819_1531518_+	PRK10437, PRK10437, carbonic anhydrase; Provisional	NA|183aa|up_3|NZ_CP015195.1_1531498_1532047_-	PRK00220, PRK00220, glycerol-3-phosphate 1-O-acyltransferase PlsY	NA|117aa|up_2|NZ_CP015195.1_1532116_1532467_+	PRK11593, folB, bifunctional dihydroneopterin aldolase/7,8-dihydroneopterin epimerase	NA|298aa|up_1|NZ_CP015195.1_1532476_1533370_+	PRK09027, PRK09027, cytidine deaminase; Provisional	NA|717aa|up_0|NZ_CP015195.1_1533480_1535631_-	COG5563, COG5563, Predicted integral membrane proteins containing uncharacterized repeats [Function unknown]	NA|1032aa|down_0|NZ_CP015195.1_1536307_1539403_-	PRK09579, PRK09579, multidrug efflux RND transporter permease subunit	NA|408aa|down_1|NZ_CP015195.1_1539415_1540639_-	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit	NA|194aa|down_2|NZ_CP015195.1_1540702_1541284_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|625aa|down_3|NZ_CP015195.1_1541514_1543389_-	PRK10788, PRK10788, periplasmic folding chaperone; Provisional	NA|135aa|down_4|NZ_CP015195.1_1543742_1544147_-	pfam14367, DUF4411, Domain of unknown function (DUF4411)	NA|370aa|down_5|NZ_CP015195.1_1544131_1545241_-	COG2856, COG2856, Predicted Zn peptidase [Amino acid transport and metabolism]	NA|438aa|down_6|NZ_CP015195.1_1545490_1546804_+	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]	NA|90aa|down_7|NZ_CP015195.1_1546910_1547180_+	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed	NA|199aa|down_8|NZ_CP015195.1_1547250_1547847_+	pfam04011, LemA, LemA family	NA|149aa|down_9|NZ_CP015195.1_1548022_1548469_+	COG3762, COG3762, Predicted membrane protein [Function unknown]
