assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_012221565.1_ASM1222156v1	NZ_CP050865	Escherichia coli strain 8-3-Ti3 chromosome, complete genome	1	34824-34947	1	CRISPRCasFinder	no	DEDDh	DEDDh,cas3,c2c9_V-U4,DinG,PD-DExK,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,c2c9_V-U4,DinG,PD-DExK,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,RT	NA,NA|30aa|down_7|NZ_CP050865.1_43843_43933_+	NA|471aa|up_9|NZ_CP050865.1_24282_25695_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|58aa|up_8|NZ_CP050865.1_26252_26426_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP050865.1_26917_27544_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP050865.1_27564_29667_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|213aa|up_5|NZ_CP050865.1_29679_30318_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|221aa|up_4|NZ_CP050865.1_30381_31044_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP050865.1_31040_31826_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP050865.1_31829_32642_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP050865.1_32653_34258_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP050865.1_34383_34689_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP050865.1_35261_36518_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP050865.1_36558_37932_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP050865.1_38146_38788_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP050865.1_38827_39976_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP050865.1_40266_41478_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP050865.1_41590_42523_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP050865.1_42519_43545_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP050865.1_43843_43933_+	NA	NA|390aa|down_8|NZ_CP050865.1_44098_45268_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP050865.1_45413_45995_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_012221565.1_ASM1222156v1	NZ_CP050865	Escherichia coli strain 8-3-Ti3 chromosome, complete genome	2	690302-690393	2	CRISPRCasFinder	no		DEDDh,cas3,c2c9_V-U4,DinG,PD-DExK,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,c2c9_V-U4,DinG,PD-DExK,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,RT	NA|62aa|up_9|NZ_CP050865.1_679552_679738_-,NA	NA|62aa|up_9|NZ_CP050865.1_679552_679738_-	NA	NA|1321aa|up_8|NZ_CP050865.1_679816_683779_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_CP050865.1_683818_684457_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_CP050865.1_684744_685836_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP050865.1_685835_686528_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP050865.1_686539_686926_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP050865.1_686933_687734_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP050865.1_687743_688334_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP050865.1_688344_688839_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP050865.1_688859_690188_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP050865.1_690816_691413_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP050865.1_691433_691661_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP050865.1_691698_692940_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|69aa|down_3|NZ_CP050865.1_693228_693435_-	PRK09784, PRK09784, YccE family protein	NA|307aa|down_4|NZ_CP050865.1_694249_695170_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_5|NZ_CP050865.1_695169_695475_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_6|NZ_CP050865.1_695626_696226_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_7|NZ_CP050865.1_696222_698769_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_8|NZ_CP050865.1_698768_699941_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_9|NZ_CP050865.1_700070_700763_+	PRK10766, PRK10766, two-component system response regulator TorR
GCF_012221565.1_ASM1222156v1	NZ_CP050865	Escherichia coli strain 8-3-Ti3 chromosome, complete genome	3	836632-836780	3,1	CRISPRCasFinder,PILER-CR	no		DEDDh,cas3,c2c9_V-U4,DinG,PD-DExK,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1	Orphan	ATTTCTAAGCTGCCTGTACGGCAGTGAAC,ATTTCTAAGCTGCCTGTACGGCAGTGAAC	29,29	0	0	NA	NA	I-F:I-F	2,2	2	Orphan	DEDDh,cas3,c2c9_V-U4,DinG,PD-DExK,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,RT	NA,NA	NA|431aa|up_9|NZ_CP050865.1_821678_822971_-	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|448aa|up_8|NZ_CP050865.1_823061_824405_-	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|204aa|up_7|NZ_CP050865.1_824415_825027_-	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|1356aa|up_6|NZ_CP050865.1_825181_829249_-	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|165aa|up_5|NZ_CP050865.1_829383_829878_-	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|322aa|up_4|NZ_CP050865.1_830422_831388_+	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|589aa|up_3|NZ_CP050865.1_831510_833277_+	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|574aa|up_2|NZ_CP050865.1_833277_834999_+	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|235aa|up_1|NZ_CP050865.1_835040_835745_+	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|73aa|up_0|NZ_CP050865.1_836029_836248_+	PRK00276, infA, translation initiation factor IF-1; Validated	NA|759aa|down_0|NZ_CP050865.1_836992_839269_-	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|107aa|down_1|NZ_CP050865.1_839299_839620_-	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|75aa|down_2|NZ_CP050865.1_839942_840167_+	PRK09937, PRK09937, cold shock-like protein CspD	NA|649aa|down_3|NZ_CP050865.1_840239_842186_-	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|372aa|down_4|NZ_CP050865.1_842182_843298_-	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|317aa|down_5|NZ_CP050865.1_843454_844405_+	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|553aa|down_6|NZ_CP050865.1_844401_846060_-	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|232aa|down_7|NZ_CP050865.1_846485_847181_+	PRK05420, PRK05420, aquaporin Z; Provisional	NA|300aa|down_8|NZ_CP050865.1_847675_848575_+	COG2431, COG2431, Predicted membrane protein [Function unknown]	NA|551aa|down_9|NZ_CP050865.1_848718_850371_+	PRK05290, PRK05290, hybrid cluster protein; Provisional
GCF_012221565.1_ASM1222156v1	NZ_CP050865	Escherichia coli strain 8-3-Ti3 chromosome, complete genome	4	1773589-1773704	4	CRISPRCasFinder	no		DEDDh,cas3,c2c9_V-U4,DinG,PD-DExK,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1	Orphan	AACGCCTGATGCGACGCTGACGCGTCTTATC	31	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,c2c9_V-U4,DinG,PD-DExK,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,RT	NA,NA	NA|393aa|up_9|NZ_CP050865.1_1761604_1762783_-	TIGR00899, Sugar_efflux_transporter_A, sugar efflux transporter	NA|44aa|up_8|NZ_CP050865.1_1762884_1763016_-	pfam15894, SgrT, Inhibitor of glucose uptake transporter SgrT	NA|552aa|up_7|NZ_CP050865.1_1763104_1764760_+	PRK13626, PRK13626, HTH-type transcriptional regulator SgrR	NA|328aa|up_6|NZ_CP050865.1_1764923_1765907_+	PRK11205, tbpA, thiamine transporter substrate binding subunit; Provisional	NA|537aa|up_5|NZ_CP050865.1_1765882_1767493_+	PRK09433, thiP, thiamine transporter membrane protein; Reviewed	NA|233aa|up_4|NZ_CP050865.1_1767476_1768175_+	PRK10771, thiQ, thiamine ABC transporter ATP-binding protein ThiQ	NA|255aa|up_3|NZ_CP050865.1_1768288_1769053_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|293aa|up_2|NZ_CP050865.1_1769138_1770017_-	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC	NA|567aa|up_1|NZ_CP050865.1_1770355_1772056_+	PRK04123, PRK04123, ribulokinase; Provisional	NA|501aa|up_0|NZ_CP050865.1_1772066_1773569_+	PRK02929, PRK02929, L-arabinose isomerase; Provisional	NA|232aa|down_0|NZ_CP050865.1_1773768_1774464_+	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD	NA|784aa|down_1|NZ_CP050865.1_1774538_1776890_+	PRK05762, PRK05762, DNA polymerase II; Reviewed	NA|969aa|down_2|NZ_CP050865.1_1777054_1779961_+	PRK04914, PRK04914, RNA polymerase-associated protein RapA	NA|220aa|down_3|NZ_CP050865.1_1779972_1780632_+	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA	NA|270aa|down_4|NZ_CP050865.1_1780748_1781558_-	PRK09430, djlA, co-chaperone DjlA	NA|785aa|down_5|NZ_CP050865.1_1781812_1784167_+	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional	NA|429aa|down_6|NZ_CP050865.1_1784219_1785506_+	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional	NA|330aa|down_7|NZ_CP050865.1_1785505_1786495_+	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed	NA|274aa|down_8|NZ_CP050865.1_1786491_1787313_+	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA	NA|126aa|down_9|NZ_CP050865.1_1787315_1787693_+	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed
GCF_012221565.1_ASM1222156v1	NZ_CP050865	Escherichia coli strain 8-3-Ti3 chromosome, complete genome	5	1964760-1964910	5	CRISPRCasFinder	no		DEDDh,cas3,c2c9_V-U4,DinG,PD-DExK,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1	Orphan	AACTCGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAATGCTGTTATT	53	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,c2c9_V-U4,DinG,PD-DExK,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,RT	NA,NA|108aa|down_7|NZ_CP050865.1_1974031_1974355_-,NA|228aa|down_8|NZ_CP050865.1_1974341_1975025_-	NA|422aa|up_9|NZ_CP050865.1_1951252_1952518_-	PRK09692, PRK09692, integrase; Provisional	NA|340aa|up_8|NZ_CP050865.1_1952961_1953981_+	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|188aa|up_7|NZ_CP050865.1_1953984_1954548_-	PRK09825, idnK, gluconokinase	NA|344aa|up_6|NZ_CP050865.1_1954764_1955796_+	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional	NA|255aa|up_5|NZ_CP050865.1_1955819_1956584_+	PRK08085, PRK08085, gluconate 5-dehydrogenase; Provisional	NA|440aa|up_4|NZ_CP050865.1_1956648_1957968_+	TIGR00791, Gluconate_permease, gluconate transporter	NA|333aa|up_3|NZ_CP050865.1_1958034_1959033_+	cd01575, PBP1_GntR, ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators	NA|361aa|up_2|NZ_CP050865.1_1960730_1961813_-	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|367aa|up_1|NZ_CP050865.1_1961812_1962913_-	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|504aa|up_0|NZ_CP050865.1_1963179_1964691_+	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|148aa|down_0|NZ_CP050865.1_1964951_1965395_+	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|952aa|down_1|NZ_CP050865.1_1965394_1968250_+	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|399aa|down_2|NZ_CP050865.1_1968305_1969502_-	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|266aa|down_3|NZ_CP050865.1_1969921_1970719_-	PRK09183, PRK09183, transposase/IS protein; Provisional	NA|391aa|down_4|NZ_CP050865.1_1970718_1971891_-	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|139aa|down_5|NZ_CP050865.1_1972377_1972794_-	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|335aa|down_6|NZ_CP050865.1_1972955_1973960_+	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|108aa|down_7|NZ_CP050865.1_1974031_1974355_-	NA	NA|228aa|down_8|NZ_CP050865.1_1974341_1975025_-	NA	NA|151aa|down_9|NZ_CP050865.1_1976584_1977037_-	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]
GCF_012221565.1_ASM1222156v1	NZ_CP050865	Escherichia coli strain 8-3-Ti3 chromosome, complete genome	6	3586920-3587074	2,6	PILER-CR,CRISPRCasFinder	no		DEDDh,cas3,c2c9_V-U4,DinG,PD-DExK,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1	Orphan	AGTGTTCCCCGCGCCAGCGGGGATAAACCGGG,TCCCCGCGCCAGCGGGGATAAACCGGA	32,27	0	0	NA	NA	I-E:I-E	2,2	2	Orphan	DEDDh,cas3,c2c9_V-U4,DinG,PD-DExK,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,RT	NA|47aa|up_1|NZ_CP050865.1_3585630_3585771_-,NA	NA|919aa|up_9|NZ_CP050865.1_3572737_3575494_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|434aa|up_8|NZ_CP050865.1_3575550_3576852_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_7|NZ_CP050865.1_3576899_3579134_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_6|NZ_CP050865.1_3579211_3579460_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_5|NZ_CP050865.1_3579459_3579795_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_4|NZ_CP050865.1_3579865_3580657_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_3|NZ_CP050865.1_3580884_3582522_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_2|NZ_CP050865.1_3582609_3583908_+	PRK00077, eno, enolase; Provisional	NA|47aa|up_1|NZ_CP050865.1_3585630_3585771_-	NA	NA|224aa|up_0|NZ_CP050865.1_3585909_3586581_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|397aa|down_0|NZ_CP050865.1_3587194_3588385_+	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|139aa|down_1|NZ_CP050865.1_3591095_3591512_-	COG1070, XylB, Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]	NA|262aa|down_2|NZ_CP050865.1_3593130_3593916_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|397aa|down_3|NZ_CP050865.1_3594435_3595626_-	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|470aa|down_4|NZ_CP050865.1_3596765_3598175_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|NZ_CP050865.1_3598152_3598932_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|298aa|down_6|NZ_CP050865.1_3598895_3599789_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_7|NZ_CP050865.1_3599936_3600512_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_8|NZ_CP050865.1_3600528_3600789_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_9|NZ_CP050865.1_3600779_3602051_-	PRK10015, PRK10015, oxidoreductase; Provisional
GCF_012221565.1_ASM1222156v1	NZ_CP050865	Escherichia coli strain 8-3-Ti3 chromosome, complete genome	7	3588405-3588621	3,7,1	PILER-CR,CRISPRCasFinder,CRT	no		DEDDh,cas3,c2c9_V-U4,DinG,PD-DExK,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1	Orphan	GTAGAGCTCCCCGCGCCAGCGGGGATAAACCG,TCCCCGCGCCAGCGGGGATAAACCGGA,TCCCCGCGCCAGCGGGGATAAACCG	32,27,25	0	0	NA	NA	I-E:I-E:I-E	3,3,3	3	Orphan	DEDDh,cas3,c2c9_V-U4,DinG,PD-DExK,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,RT	NA|47aa|up_2|NZ_CP050865.1_3585630_3585771_-,NA	NA|434aa|up_9|NZ_CP050865.1_3575550_3576852_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_8|NZ_CP050865.1_3576899_3579134_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_7|NZ_CP050865.1_3579211_3579460_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_6|NZ_CP050865.1_3579459_3579795_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_5|NZ_CP050865.1_3579865_3580657_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_4|NZ_CP050865.1_3580884_3582522_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_3|NZ_CP050865.1_3582609_3583908_+	PRK00077, eno, enolase; Provisional	NA|47aa|up_2|NZ_CP050865.1_3585630_3585771_-	NA	NA|224aa|up_1|NZ_CP050865.1_3585909_3586581_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|397aa|up_0|NZ_CP050865.1_3587194_3588385_+	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|139aa|down_0|NZ_CP050865.1_3591095_3591512_-	COG1070, XylB, Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]	NA|262aa|down_1|NZ_CP050865.1_3593130_3593916_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|397aa|down_2|NZ_CP050865.1_3594435_3595626_-	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|470aa|down_3|NZ_CP050865.1_3596765_3598175_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_4|NZ_CP050865.1_3598152_3598932_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|298aa|down_5|NZ_CP050865.1_3598895_3599789_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_6|NZ_CP050865.1_3599936_3600512_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_7|NZ_CP050865.1_3600528_3600789_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_8|NZ_CP050865.1_3600779_3602051_-	PRK10015, PRK10015, oxidoreductase; Provisional	NA|122aa|down_9|NZ_CP050865.1_3602128_3602494_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)
GCF_012221565.1_ASM1222156v1	NZ_CP050865	Escherichia coli strain 8-3-Ti3 chromosome, complete genome	8	3618494-3618949	4,8,2	PILER-CR,CRISPRCasFinder,CRT	no	cas8e,cse2gr11,cas7,cas5,cas6e,cas1	DEDDh,cas3,c2c9_V-U4,DinG,PD-DExK,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACC,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	28,29,29	0	0	NA	NA	I-E:I-E:I-E	7,7,7	7	TypeI-E	DEDDh,cas3,c2c9_V-U4,DinG,PD-DExK,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,RT	NA,NA	NA|571aa|up_9|NZ_CP050865.1_3604608_3606321_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_8|NZ_CP050865.1_3606394_3607129_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|51aa|up_7|NZ_CP050865.1_3607393_3607546_+	pfam01848, HOK_GEF, Hok/gef family	NA|397aa|up_6|NZ_CP050865.1_3607651_3608842_+	pfam01609, DDE_Tnp_1, Transposase DDE domain	cas8e|521aa|up_5|NZ_CP050865.1_3612617_3614180_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|178aa|up_4|NZ_CP050865.1_3614176_3614710_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas7|358aa|up_3|NZ_CP050865.1_3614724_3615798_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_2|NZ_CP050865.1_3615808_3616555_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_1|NZ_CP050865.1_3616536_3617187_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|308aa|up_0|NZ_CP050865.1_3617183_3618107_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	NA|346aa|down_0|NZ_CP050865.1_3619030_3620068_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP050865.1_3620319_3621228_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP050865.1_3621229_3622657_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP050865.1_3622656_3623262_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP050865.1_3623311_3623635_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP050865.1_3623828_3624140_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP050865.1_3624158_3624869_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP050865.1_3624868_3625348_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP050865.1_3625344_3626394_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP050865.1_3626374_3627136_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
