assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_012219705.1_ASM1221970v1	NZ_CP047614	Lactococcus raffinolactis strain Lr_19_7 chromosome, complete genome	1	314051-314199	1	CRISPRCasFinder	no		cas3,csa3,DinG,WYL,DEDDh	Orphan	GAAGATCGTGAATGACCCTGCTTGGCAGGAGCGCAAGCGGAAGTCAAGTTTCAAG	55	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DinG,WYL,DEDDh	NA|77aa|up_3|NZ_CP047614.1_310831_311062_+,NA|81aa|up_2|NZ_CP047614.1_311065_311308_+,NA	NA|133aa|up_9|NZ_CP047614.1_304468_304867_-	pfam13275, S4_2, S4 domain	NA|421aa|up_8|NZ_CP047614.1_305105_306368_+	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only]	NA|428aa|up_7|NZ_CP047614.1_306357_307641_+	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only]	NA|290aa|up_6|NZ_CP047614.1_307714_308584_+	COG1426, COG1426, Predicted transcriptional regulator contains Xre-like HTH domain [Function unknown]	NA|186aa|up_5|NZ_CP047614.1_308591_309149_+	TIGR00560, pgsA, CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA|429aa|up_4|NZ_CP047614.1_309548_310835_+	TIGR00442, hisS, histidyl-tRNA synthetase	NA|77aa|up_3|NZ_CP047614.1_310831_311062_+	NA	NA|81aa|up_2|NZ_CP047614.1_311065_311308_+	NA	NA|581aa|up_1|NZ_CP047614.1_311331_313074_+	PRK00476, aspS, aspartyl-tRNA synthetase; Validated	NA|306aa|up_0|NZ_CP047614.1_313040_313958_+	COG1284, COG1284, Uncharacterized conserved protein [Function unknown]	NA|289aa|down_0|NZ_CP047614.1_314238_315105_+	COG1284, COG1284, Uncharacterized conserved protein [Function unknown]	NA|35aa|down_1|NZ_CP047614.1_315250_315355_-	pfam16935, Hol_Tox, Putative Holin-like Toxin (Hol-Tox)	NA|330aa|down_2|NZ_CP047614.1_315594_316584_-	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|287aa|down_3|NZ_CP047614.1_316585_317446_-	PRK00114, hslO, Hsp33 family molecular chaperone HslO	NA|147aa|down_4|NZ_CP047614.1_317656_318097_+	pfam08837, DUF1810, Protein of unknown function (DUF1810)	NA|478aa|down_5|NZ_CP047614.1_318449_319883_-	PRK14022, PRK14022, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase	NA|278aa|down_6|NZ_CP047614.1_319983_320817_+	PRK01103, PRK01103, bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA|391aa|down_7|NZ_CP047614.1_320937_322110_+	PRK09354, recA, recombinase A; Provisional	NA|133aa|down_8|NZ_CP047614.1_322289_322688_+	PRK01655, spxA, transcriptional regulator Spx; Reviewed	NA|66aa|down_9|NZ_CP047614.1_323188_323386_-	pfam05532, CsbD, CsbD-like
GCF_012219705.1_ASM1221970v1	NZ_CP047614	Lactococcus raffinolactis strain Lr_19_7 chromosome, complete genome	2	453118-453251	2	CRISPRCasFinder	no		cas3,csa3,DinG,WYL,DEDDh	Orphan	TTCGCGGGTTCCCCGCTCATCATTAAAGGAGTTGCCA	37	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DinG,WYL,DEDDh	NA|109aa|up_4|NZ_CP047614.1_449892_450219_+,NA|77aa|up_3|NZ_CP047614.1_450294_450525_-,NA|121aa|down_8|NZ_CP047614.1_465818_466181_+	NA|288aa|up_9|NZ_CP047614.1_446323_447187_+	COG2996, COG2996, Predicted RNA-bindining protein (contains S1 and HTH domains) [General function prediction only]	NA|174aa|up_8|NZ_CP047614.1_447183_447705_+	PRK14054, PRK14054, peptide-methionine (S)-S-oxide reductase	NA|70aa|up_7|NZ_CP047614.1_447701_447911_+	PRK13672, PRK13672, hypothetical protein; Provisional	NA|142aa|up_6|NZ_CP047614.1_448152_448578_+	PRK00140, rplK, 50S ribosomal protein L11; Validated	NA|229aa|up_5|NZ_CP047614.1_448750_449437_+	PRK05424, rplA, 50S ribosomal protein L1; Validated	NA|109aa|up_4|NZ_CP047614.1_449892_450219_+	NA	NA|77aa|up_3|NZ_CP047614.1_450294_450525_-	NA	NA|134aa|up_2|NZ_CP047614.1_450675_451077_-	cd01277, HINT_subgroup, HINT (histidine triad nucleotide-binding protein) subgroup: Members of this CD belong to the superfamily of histidine triad hydrolases that act on alpha-phosphate of ribonucleotides	NA|248aa|up_1|NZ_CP047614.1_451156_451900_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|342aa|up_0|NZ_CP047614.1_451892_452918_+	COG4473, EcsB, Predicted ABC-type exoprotein transport system, permease component [Intracellular trafficking and secretion]	NA|153aa|down_0|NZ_CP047614.1_453927_454386_+	pfam02502, LacAB_rpiB, Ribose/Galactose Isomerase	NA|211aa|down_1|NZ_CP047614.1_454453_455086_-	COG3142, CutC, Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]	NA|285aa|down_2|NZ_CP047614.1_455267_456122_+	COG1284, COG1284, Uncharacterized conserved protein [Function unknown]	NA|243aa|down_3|NZ_CP047614.1_456140_456869_+	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|448aa|down_4|NZ_CP047614.1_456878_458222_+	cd03888, M20_PepV, M20 Peptidase Xaa-His dipeptidase (PepV) degrades hydrophobic dipeptides	NA|323aa|down_5|NZ_CP047614.1_458237_459206_+	cd04513, Glycosylasparaginase, Glycosylasparaginase and similar proteins	NA|497aa|down_6|NZ_CP047614.1_459287_460778_-	pfam05043, Mga, Mga helix-turn-helix domain	NA|1449aa|down_7|NZ_CP047614.1_461306_465653_+	pfam18202, TQ, T-Q ester bond containing domain	NA|121aa|down_8|NZ_CP047614.1_465818_466181_+	NA	NA|276aa|down_9|NZ_CP047614.1_466164_466992_+	PRK11088, rrmA, 23S rRNA methyltransferase A; Provisional
GCF_012219705.1_ASM1221970v1	NZ_CP047614	Lactococcus raffinolactis strain Lr_19_7 chromosome, complete genome	3	1618590-1618733	3	CRISPRCasFinder	no		cas3,csa3,DinG,WYL,DEDDh	Orphan	CTAAGCTCTTCGTCTCTTCGTTCCTCAATCGCTAAAGGAGTAGCC	45	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DinG,WYL,DEDDh	NA|153aa|up_2|NZ_CP047614.1_1615655_1616114_-,NA	NA|427aa|up_9|NZ_CP047614.1_1608831_1610112_+	COG3493, CitS, Na+/citrate symporter [Energy production and conversion]	NA|375aa|up_8|NZ_CP047614.1_1610286_1611411_-	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed	NA|204aa|up_7|NZ_CP047614.1_1611676_1612288_+	COG3340, PepE, Peptidase E [Amino acid transport and metabolism]	NA|351aa|up_6|NZ_CP047614.1_1612399_1613452_-	PHA02562, 46, endonuclease subunit; Provisional	NA|182aa|up_5|NZ_CP047614.1_1613659_1614205_+	COG1268, BioY, Uncharacterized conserved protein [General function prediction only]	NA|101aa|up_4|NZ_CP047614.1_1614197_1614500_+	COG4357, COG4357, Zinc finger domain containing protein (CHY type) [Function unknown]	NA|313aa|up_3|NZ_CP047614.1_1614611_1615550_+	PRK11886, PRK11886, bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA	NA|153aa|up_2|NZ_CP047614.1_1615655_1616114_-	NA	NA|214aa|up_1|NZ_CP047614.1_1617209_1617851_+	cd04302, HAD_5NT, haloacid dehalogenase (HAD)-like 5'-nucleotidases similar to the Pseudomonas aeruginosa PA0065	NA|224aa|up_0|NZ_CP047614.1_1617847_1618519_+	COG1760, SdaA, L-serine deaminase [Amino acid transport and metabolism]	NA|140aa|down_0|NZ_CP047614.1_1620806_1621226_-	PRK00571, atpC, F0F1 ATP synthase subunit epsilon; Validated	NA|471aa|down_1|NZ_CP047614.1_1621237_1622650_-	PRK09280, PRK09280, F0F1 ATP synthase subunit beta; Validated	NA|292aa|down_2|NZ_CP047614.1_1622687_1623563_-	PRK05621, PRK05621, F0F1 ATP synthase subunit gamma; Validated	NA|502aa|down_3|NZ_CP047614.1_1623698_1625204_-	PRK09281, PRK09281, F0F1 ATP synthase subunit alpha; Validated	NA|176aa|down_4|NZ_CP047614.1_1625344_1625872_-	PRK05758, PRK05758, F0F1 ATP synthase subunit delta; Validated	NA|170aa|down_5|NZ_CP047614.1_1625874_1626384_-	PRK05759, PRK05759, F0F1 ATP synthase subunit B; Validated	NA|237aa|down_6|NZ_CP047614.1_1626396_1627107_-	PRK05815, PRK05815, F0F1 ATP synthase subunit A; Validated	NA|67aa|down_7|NZ_CP047614.1_1627212_1627413_-	PRK13467, PRK13467, F0F1 ATP synthase subunit C; Provisional	NA|760aa|down_8|NZ_CP047614.1_1628441_1630721_-	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]	NA|184aa|down_9|NZ_CP047614.1_1630659_1631211_-	TIGR01259, ComE_operon_protein_1, comEA protein
GCF_012219705.1_ASM1221970v1	NZ_CP047614	Lactococcus raffinolactis strain Lr_19_7 chromosome, complete genome	4	1972354-1972463	4	CRISPRCasFinder	no		cas3,csa3,DinG,WYL,DEDDh	Orphan	TTGTGAGCTGAAATCTAACGAAGTC	25	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DinG,WYL,DEDDh	NA,NA	NA|104aa|up_9|NZ_CP047614.1_1963221_1963533_-	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein	NA|96aa|up_8|NZ_CP047614.1_1963532_1963820_-	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein	NA|56aa|up_7|NZ_CP047614.1_1964227_1964395_+	pfam11240, DUF3042, Protein of unknown function (DUF3042)	NA|198aa|up_6|NZ_CP047614.1_1964513_1965107_-	pfam12732, YtxH, YtxH-like protein	NA|133aa|up_5|NZ_CP047614.1_1965191_1965590_-	COG4768, COG4768, Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain [General function prediction only]	NA|266aa|up_4|NZ_CP047614.1_1965707_1966505_-	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|308aa|up_3|NZ_CP047614.1_1966506_1967430_-	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|108aa|up_2|NZ_CP047614.1_1967652_1967976_-	COG1983, PspC, Putative stress-responsive transcriptional regulator [Transcription / Signal transduction mechanisms]	NA|411aa|up_1|NZ_CP047614.1_1967968_1969201_-	COG3595, COG3595, Uncharacterized conserved protein [Function unknown]	NA|933aa|up_0|NZ_CP047614.1_1969371_1972170_-	PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed	NA|238aa|down_0|NZ_CP047614.1_1972685_1973399_-	pfam05103, DivIVA, DivIVA protein	NA|266aa|down_1|NZ_CP047614.1_1973503_1974301_-	COG2302, COG2302, Uncharacterized conserved protein, contains S4-like domain [Function unknown]	NA|82aa|down_2|NZ_CP047614.1_1974300_1974546_-	pfam02325, YGGT, YGGT family	NA|183aa|down_3|NZ_CP047614.1_1974545_1975094_-	COG1799, COG1799, Uncharacterized protein conserved in bacteria [Function unknown]	NA|221aa|down_4|NZ_CP047614.1_1975143_1975806_-	cd00635, PLPDE_III_YBL036c_like, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, YBL036c-like proteins	NA|422aa|down_5|NZ_CP047614.1_1975809_1977075_-	PRK09330, PRK09330, cell division protein FtsZ; Validated	NA|457aa|down_6|NZ_CP047614.1_1977215_1978586_-	COG0849, ftsA, Cell division ATPase FtsA [Cell division and chromosome partitioning]	NA|290aa|down_7|NZ_CP047614.1_1978748_1979618_-	TIGR00762, DegV, EDD domain protein, DegV family	NA|171aa|down_8|NZ_CP047614.1_1979669_1980182_-	pfam05991, NYN_YacP, YacP-like NYN domain	NA|257aa|down_9|NZ_CP047614.1_1980198_1980969_-	TIGR00186, Uncharacterized_tRNA/rRNA_methyltransferase_MG252, rRNA methylase, putative, group 3
