The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP048775	Salmonella enterica subsp. enterica serovar Agona strain SG17-135 chromosome, complete genome	4813284	1673905	1683076	4813284	tRNA	Enterobacteria_phage(66.67%)	10	NA	NA
WP_000569166.1|1673905_1674853_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.2	1.7e-23
WP_000824850.1|1674836_1675568_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_001261696.1|1675548_1675656_-	protein YohO	NA	NA	NA	NA	NA
WP_001240418.1|1675715_1676447_-	HTH-type transcriptional regulator MlrA	NA	Q9EYF2	Enterobacteria_phage	87.9	4.5e-101
WP_000272851.1|1676669_1678355_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	91.3	6.2e-279
WP_000598637.1|1678351_1679071_+	two-component system response regulator BtsR	NA	NA	NA	NA	NA
WP_000950413.1|1679117_1679585_+	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	90.3	3.9e-74
WP_001197951.1|1679641_1680172_-	YehR family lipoprotein	NA	NA	NA	NA	NA
WP_000703143.1|1680343_1680802_-	YehR family lipoprotein	NA	Q9EYF5	Enterobacteria_phage	71.9	2.4e-52
WP_000195330.1|1681042_1683076_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SDF2	Indivirus	27.6	1.0e-54
>prophage 2
NZ_CP048775	Salmonella enterica subsp. enterica serovar Agona strain SG17-135 chromosome, complete genome	4813284	1759106	1769613	4813284		Enterobacteria_phage(37.5%)	10	NA	NA
WP_001111843.1|1759106_1760510_+	colanic acid biosynthesis protein WcaM	NA	A0A291LBB9	Klebsiella_phage	26.5	3.1e-21
WP_000981469.1|1760687_1761581_+	GalU regulator GalF	NA	A0A127AW70	Bacillus_phage	42.2	4.8e-44
WP_000697849.1|1761957_1763043_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	53.6	1.0e-101
WP_001023665.1|1763042_1763942_+	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	36.0	1.1e-29
WP_000857531.1|1763989_1764868_+	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	65.5	2.1e-108
WP_000973710.1|1764868_1765420_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	58.6	1.3e-52
WP_000018219.1|1765425_1766400_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_000648785.1|1766415_1767189_+	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_000565903.1|1767193_1768273_+	CDP-glucose 4,6-dehydratase	NA	A0A222YY99	Synechococcus_phage	24.5	1.7e-16
WP_000126349.1|1768299_1769613_+	lipopolysaccharide biosynthesis protein RfbH	NA	H8ZJ36	Ostreococcus_tauri_virus	35.1	7.0e-52
>prophage 3
NZ_CP048775	Salmonella enterica subsp. enterica serovar Agona strain SG17-135 chromosome, complete genome	4813284	2693098	2741782	4813284	terminase,plate,tRNA,holin,tail	Salmonella_phage(65.52%)	65	NA	NA
WP_000334555.1|2693098_2693770_+	SOS response-associated peptidase	NA	A0A2H4J5W2	uncultured_Caudovirales_phage	61.7	5.3e-80
WP_000457670.1|2693762_2695031_-	Y-family DNA polymerase	NA	I6RSM4	Salmonella_phage	99.1	3.4e-245
WP_000394200.1|2695033_2695453_-	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A1W6JNS2	Morganella_phage	59.8	3.8e-36
WP_172480767.1|2695789_2696191_-|tail	tail fiber assembly protein	tail	A0A1B0V844	Salmonella_phage	84.8	3.6e-60
WP_172480768.1|2696194_2697418_-	hypothetical protein	NA	A0A0M3ULD8	Salmonella_phage	91.8	3.9e-73
WP_057515235.1|2697417_2698098_-	DUF2612 domain-containing protein	NA	A0A0M5M1K4	Salmonella_phage	99.1	1.4e-128
WP_020898633.1|2698094_2699294_-|plate	baseplate J/gp47 family protein	plate	A0A0M4RD32	Salmonella_phage	97.2	1.5e-213
WP_001270643.1|2699294_2699648_-	hypothetical protein	NA	A0A0M4R339	Salmonella_phage	97.4	2.1e-59
WP_172480769.1|2699647_2700403_-	translation initiation factor IF-2	NA	A0A0M5M1K7	Salmonella_phage	91.6	3.2e-126
WP_000931859.1|2700521_2700977_+	hypothetical protein	NA	NA	NA	NA	NA
WP_020898631.1|2701060_2701408_-	hypothetical protein	NA	A0A0M4RTY3	Salmonella_phage	69.2	1.2e-22
WP_020898630.1|2701404_2702472_-	hypothetical protein	NA	A0A0M4QX01	Salmonella_phage	91.0	1.4e-172
WP_020898629.1|2702474_2702777_-	hypothetical protein	NA	A0A0M4R5B7	Salmonella_phage	98.0	7.9e-52
WP_020898628.1|2702776_2703352_-	hypothetical protein	NA	A0A0M3ULD5	Salmonella_phage	99.5	5.3e-97
WP_172480770.1|2703351_2705361_-	transglycosylase SLT domain-containing protein	NA	A0A0M4REK7	Salmonella_phage	99.6	0.0e+00
WP_172480771.1|2705538_2705991_-	hypothetical protein	NA	A0A0M4S6U8	Salmonella_phage	82.0	1.9e-65
WP_023209965.1|2705994_2706435_-	DUF3277 family protein	NA	A0A2H4J619	uncultured_Caudovirales_phage	74.0	4.6e-56
WP_042949534.1|2706446_2707592_-	DUF3383 domain-containing protein	NA	A0A2H4J8G4	uncultured_Caudovirales_phage	75.1	4.5e-164
WP_042949532.1|2707595_2708141_-	hypothetical protein	NA	A0A2H4J1A0	uncultured_Caudovirales_phage	53.0	1.8e-49
WP_042949530.1|2708133_2708538_-	hypothetical protein	NA	A0A2H4J1A4	uncultured_Caudovirales_phage	69.2	2.0e-42
WP_042949527.1|2708537_2709047_-	hypothetical protein	NA	A0A2H4J488	uncultured_Caudovirales_phage	40.7	3.8e-22
WP_042949525.1|2709043_2709454_-	DUF4054 domain-containing protein	NA	A0A2H4J1A6	uncultured_Caudovirales_phage	51.1	9.8e-29
WP_042949524.1|2709422_2709791_-	hypothetical protein	NA	NA	NA	NA	NA
WP_047602436.1|2709840_2710788_-	DUF2184 domain-containing protein	NA	A0A0M3ULD3	Salmonella_phage	54.2	6.1e-98
WP_042949519.1|2710799_2711303_-	hypothetical protein	NA	A0A0M4QWZ6	Salmonella_phage	46.1	1.5e-31
WP_042949517.1|2711314_2712592_-	DUF2213 domain-containing protein	NA	A0A0M4R5A6	Salmonella_phage	42.8	7.2e-78
WP_042949515.1|2712643_2713177_-	phage Mu F like family protein	NA	A0A0M4REK0	Salmonella_phage	53.4	1.3e-44
WP_042949513.1|2713253_2714717_-	DUF1073 domain-containing protein	NA	A0A0M4S6U1	Salmonella_phage	55.1	2.7e-153
WP_047602448.1|2714757_2716176_-|terminase	PBSX family phage terminase large subunit	terminase	A0A077KAW0	Edwardsiella_phage	69.4	4.0e-186
WP_172480772.1|2716141_2716894_-	hypothetical protein	NA	A0A077KBY7	Edwardsiella_phage	60.4	2.6e-11
WP_047602453.1|2716983_2717187_-	hypothetical protein	NA	NA	NA	NA	NA
WP_051976376.1|2717251_2717815_-	hypothetical protein	NA	K7PHH7	Enterobacteria_phage	61.7	2.1e-50
WP_172480773.1|2717811_2718438_-	glycoside hydrolase family 19 protein	NA	Q858F0	Salmonella_phage	78.7	8.7e-93
WP_162264800.1|2718440_2718782_-|holin	phage holin, lambda family	holin	Q8SBE1	Shigella_phage	80.4	9.6e-46
WP_172480774.1|2718981_2719671_-	antiterminator	NA	I6PDF8	Cronobacter_phage	49.8	4.5e-58
WP_079940961.1|2719667_2719808_-	YlcG family protein	NA	A0A0M5M7B2	Salmonella_phage	73.7	2.7e-07
WP_079940960.1|2719804_2720446_-	recombination protein NinG	NA	S4TSR3	Salmonella_phage	97.7	9.1e-114
WP_172480775.1|2720654_2721257_-	DUF1367 family protein	NA	H6WRY7	Salmonella_phage	98.5	2.4e-108
WP_001804676.1|2721296_2721536_-	hypothetical protein	NA	H6WRY6	Salmonella_phage	100.0	5.9e-42
WP_001217670.1|2721591_2721831_-	DinI family protein	NA	H6WRY5	Salmonella_phage	100.0	3.9e-38
WP_079940957.1|2722318_2722951_-	hypothetical protein	NA	H6WRY3	Salmonella_phage	98.1	5.1e-109
WP_000276802.1|2723048_2723228_-	DUF1187 family protein	NA	A0A0U2QL97	Escherichia_phage	62.1	4.3e-13
WP_079940959.1|2723813_2724071_-	hypothetical protein	NA	A0A192Y5W0	Salmonella_phage	94.1	1.3e-39
WP_172480776.1|2724072_2724408_-	hypothetical protein	NA	H6WRY0	Salmonella_phage	98.2	1.0e-52
WP_000113626.1|2724404_2724752_-	DUF977 family protein	NA	H6WRX9	Salmonella_phage	100.0	4.5e-59
WP_000800016.1|2724762_2725512_-	ATP-binding protein	NA	H6WRX8	Salmonella_phage	100.0	6.6e-140
WP_001540689.1|2725514_2726498_-	replication protein	NA	H6WRX7	Salmonella_phage	100.0	1.9e-163
WP_001538023.1|2726582_2726957_-	hypothetical protein	NA	S4TTD7	Salmonella_phage	100.0	3.0e-64
WP_000869364.1|2726922_2727159_-	helix-turn-helix domain-containing protein	NA	H6WRX5	Salmonella_phage	100.0	1.8e-38
WP_001009038.1|2727288_2727693_+	transcriptional regulator	NA	H6WRX4	Salmonella_phage	100.0	4.2e-72
WP_000917563.1|2728089_2728248_+	hypothetical protein	NA	H6WRX3	Salmonella_phage	100.0	2.4e-23
WP_023195475.1|2728269_2728620_+	hypothetical protein	NA	S4TSN6	Salmonella_phage	94.8	2.0e-59
WP_172480777.1|2728746_2731947_+	PD-(D/E)XK nuclease-like domain-containing protein	NA	H6WRX1	Salmonella_phage	78.4	0.0e+00
WP_077907589.1|2731909_2733067_+	recombinase RecT	NA	S4TTE8	Salmonella_phage	99.7	2.1e-217
WP_001237031.1|2733109_2733349_+	DUF4060 family protein	NA	S4TR31	Salmonella_phage	100.0	2.0e-37
WP_172480778.1|2733526_2733673_+	hypothetical protein	NA	A0A1B5FPC2	Escherichia_phage	81.2	6.8e-17
WP_024143316.1|2733680_2733917_+	excisionase family protein	NA	Q8W657	Enterobacteria_phage	93.6	3.5e-39
WP_172480779.1|2733975_2735289_+	DUF3596 domain-containing protein	NA	Q8W658	Enterobacteria_phage	87.4	3.9e-228
WP_049808248.1|2735267_2736041_+	DUF72 domain-containing protein	NA	Q859D1	Escherichia_coli_phage	80.3	4.2e-57
WP_000252975.1|2736093_2736489_+	MAPEG family protein	NA	NA	NA	NA	NA
WP_000019609.1|2736529_2737273_+	carboxy-S-adenosyl-L-methionine synthase CmoA	NA	F5B419	Synechococcus_phage	30.9	5.4e-25
WP_000569026.1|2737269_2738241_+|tRNA	tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB	tRNA	NA	NA	NA	NA
WP_001185770.1|2738476_2739223_-	copper homeostasis protein CutC	NA	NA	NA	NA	NA
WP_000024796.1|2739242_2739812_-	VOC family protein	NA	NA	NA	NA	NA
WP_001025363.1|2740048_2741782_+|tRNA	arginine--tRNA ligase	tRNA	A0A2K9L6Z2	Tupanvirus	33.4	2.8e-85
>prophage 4
NZ_CP048775	Salmonella enterica subsp. enterica serovar Agona strain SG17-135 chromosome, complete genome	4813284	2818605	2855841	4813284	plate,transposase	Shigella_phage(20.0%)	28	NA	NA
WP_139378116.1|2818605_2819768_-|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	43.4	3.3e-53
WP_000739389.1|2819961_2820927_-	Sel1 repeat protein	NA	NA	NA	NA	NA
WP_000014621.1|2820994_2825161_-	RHS repeat protein	NA	A0A2H4JFP5	uncultured_Caudovirales_phage	40.6	1.4e-21
WP_000103453.1|2825229_2827371_-	type VI secretion system tip protein VgrG	NA	A0A077K8Q4	Ralstonia_phage	25.4	2.9e-23
WP_001142966.1|2827593_2828112_-	Hcp family type VI secretion system effector	NA	NA	NA	NA	NA
WP_000031252.1|2828740_2829244_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA	NA
WP_001747654.1|2829534_2831007_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA	NA
WP_000611701.1|2831003_2831420_+|plate	type VI secretion system baseplate subunit TssE	plate	NA	NA	NA	NA
WP_000393863.1|2831424_2833278_+|plate	type VI secretion system baseplate subunit TssF	plate	NA	NA	NA	NA
WP_000509052.1|2833241_2834330_+|plate	type VI secretion system baseplate subunit TssG	plate	NA	NA	NA	NA
WP_000796942.1|2834354_2835641_+	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA	NA
WP_130549539.1|2835667_2836171_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA	NA
WP_000246455.1|2836173_2837505_+|plate	type VI secretion system baseplate subunit TssK	plate	NA	NA	NA	NA
WP_000343978.1|2837509_2838268_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA	NA
WP_000614296.1|2838280_2841016_+	type VI secretion system ATPase TssH	NA	K4FB40	Cronobacter_phage	31.5	2.9e-84
WP_000089147.1|2841012_2841750_+	type VI secretion system-associated protein TagO	NA	NA	NA	NA	NA
WP_000365805.1|2841751_2843164_+	type VI secretion system protein TssA	NA	NA	NA	NA	NA
WP_001137105.1|2843242_2846704_+	type VI secretion system membrane subunit TssM	NA	NA	NA	NA	NA
WP_000076070.1|2846714_2848076_+	type VI secretion system ImpA family N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_000002328.1|2848094_2848574_+	Hcp family type VI secretion system effector	NA	NA	NA	NA	NA
WP_001139255.1|2848597_2849440_+	hypothetical protein	NA	NA	NA	NA	NA
WP_153274191.1|2851603_2851843_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001216386.1|2851884_2852331_+	DUF1240 domain-containing protein	NA	NA	NA	NA	NA
WP_000928422.1|2852371_2852884_+	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA	NA
WP_001022123.1|2852903_2853344_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001227394.1|2853352_2853724_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000623370.1|2853847_2854306_+	DUF1311 domain-containing protein	NA	NA	NA	NA	NA
WP_096322988.1|2854586_2855841_+|transposase	IS3 family transposase	transposase	Q6H9S3	Enterobacteria_phage	34.5	2.2e-18
>prophage 5
NZ_CP048775	Salmonella enterica subsp. enterica serovar Agona strain SG17-135 chromosome, complete genome	4813284	3000081	3009429	4813284	integrase,protease	Ralstonia_phage(16.67%)	8	2994504:2994518	3008165:3008179
2994504:2994518	attL	GGAAAATCAACGCTG	NA	NA	NA	NA
WP_001747671.1|3000081_3000459_+|integrase	integrase	integrase	A0A077KET4	Ralstonia_phage	40.2	1.0e-19
WP_001117984.1|3000620_3000818_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001747668.1|3002092_3002569_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000934057.1|3003065_3005342_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.3	1.1e-164
WP_000520789.1|3005372_3005693_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	45.7	4.5e-13
WP_000447499.1|3006016_3006238_+	cold shock-like protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.2	9.3e-18
WP_000125885.1|3006367_3008314_-	macrolide ABC transporter ATP-binding protein/permease MacB	NA	G9BWD6	Planktothrix_phage	41.9	2.0e-39
3008165:3008179	attR	CAGCGTTGATTTTCC	NA	NA	NA	NA
WP_001201750.1|3008310_3009429_-	macrolide transporter subunit MacA	NA	A0A140XAI1	Dickeya_phage	38.9	1.4e-08
>prophage 6
NZ_CP048775	Salmonella enterica subsp. enterica serovar Agona strain SG17-135 chromosome, complete genome	4813284	3591244	3634460	4813284	lysis,protease,terminase,integrase,portal,tail	Salmonella_phage(45.0%)	63	3590244:3590289	3630569:3630614
3590244:3590289	attL	TGGTGCCGATAATAGGAGTCGAACCTACGACCTTCGCATTACGAAT	NA	NA	NA	NA
WP_023241414.1|3591244_3593167_+	acyltransferase	NA	A0A1R3Y5Q6	Salmonella_virus	97.3	0.0e+00
WP_023241415.1|3593206_3595192_-|tail	tail spike protein	tail	A0A1R3Y5S2	Salmonella_virus	96.1	0.0e+00
WP_023241416.1|3595347_3597339_-	hypothetical protein	NA	Q76H13	Enterobacteria_phage	85.4	2.6e-308
WP_023223391.1|3597338_3598676_-	phage DNA ejection protein	NA	A0A220NR03	Salmonella_phage	95.3	6.3e-234
WP_023135926.1|3598685_3599375_-	hypothetical protein	NA	B9UDK9	Salmonella_phage	92.6	4.3e-93
WP_023241417.1|3599377_3599833_-	DUF2824 family protein	NA	E7C9U3	Salmonella_phage	98.7	6.7e-87
WP_023135928.1|3599832_3600534_-	hypothetical protein	NA	A0A0M4QWW6	Salmonella_phage	93.6	4.0e-70
WP_023241418.1|3600537_3601956_-	packaged DNA stabilization protein gp10	NA	B9UDK6	Salmonella_phage	97.5	5.6e-273
WP_023241419.1|3601956_3602427_-	hypothetical protein	NA	A5VW70	Enterobacteria_phage	98.7	1.4e-82
WP_001389518.1|3602407_3602596_-	hypothetical protein	NA	A0A088CPR7	Enterobacteria_phage	100.0	2.9e-28
WP_023241420.1|3602637_3603891_-	hypothetical protein	NA	A0A088CQ56	Enterobacteria_phage	99.0	1.8e-235
WP_023241421.1|3603909_3604803_-	DNA repair ATPase	NA	A0A088CPT0	Enterobacteria_phage	98.7	3.3e-130
WP_023241422.1|3604905_3607092_-|portal	portal protein	portal	A0A088CQ69	Enterobacteria_phage	99.2	0.0e+00
WP_140903047.1|3607093_3608509_-|terminase	PBSX family phage terminase large subunit	terminase	A5VW75	Enterobacteria_phage	99.6	4.4e-278
WP_023241423.1|3608505_3608928_-	hypothetical protein	NA	Q716H4	Shigella_phage	99.3	6.1e-74
WP_000091989.1|3608951_3609131_-	hypothetical protein	NA	Q9AZ02	Salmonella_phage	98.3	1.9e-24
WP_000807788.1|3609132_3609375_-	DUF2560 family protein	NA	A5VW77	Enterobacteria_phage	100.0	1.3e-36
WP_001279869.1|3609682_3609943_+	hypothetical protein	NA	A0A089FW14	Salmonella_phage	100.0	6.6e-39
WP_023241426.1|3611219_3611657_-|lysis	lysis protein	lysis	A0A1R3Y6Z8	Salmonella_virus	97.2	3.4e-72
WP_023241427.1|3611745_3612243_-	lysozyme	NA	A0A1R3Y5W5	Salmonella_virus	98.8	1.4e-90
WP_000286100.1|3612220_3612424_-	hypothetical protein	NA	I6R0S9	Salmonella_phage	100.0	1.1e-33
WP_023241428.1|3612977_3613742_-	antitermination protein	NA	A0A0M4RTW7	Salmonella_phage	98.8	5.5e-142
WP_015995309.1|3613738_3613921_-	hypothetical protein	NA	C6ZR61	Salmonella_phage	100.0	5.0e-25
WP_023241429.1|3613908_3614379_-	hypothetical protein	NA	C6ZR60	Salmonella_phage	96.2	1.3e-88
WP_001089628.1|3614359_3614596_-	hypothetical protein	NA	C6ZR59	Salmonella_phage	93.6	1.3e-36
WP_062946370.1|3614588_3614759_-	protein ninF	NA	K7PLU6	Enterobacteria_phage	98.2	1.6e-25
WP_172480780.1|3614755_3614938_-	NinE family protein	NA	Q716C5	Shigella_phage	98.3	6.3e-28
WP_172480781.1|3614934_3615345_-	recombination protein NinB	NA	A0A0P0ZCW6	Stx2-converting_phage	95.6	3.7e-68
WP_112922111.1|3615353_3615560_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001518144.1|3615562_3615826_-	hypothetical protein	NA	Q716C8	Shigella_phage	64.7	5.0e-26
WP_112922110.1|3615843_3616050_-	hypothetical protein	NA	K7P7Y0	Enterobacteria_phage	97.1	5.3e-31
WP_023241433.1|3616122_3617499_-	AAA family ATPase	NA	A0A0P0ZC27	Stx2-converting_phage	99.1	2.4e-252
WP_023241434.1|3617495_3618317_-	replication protein	NA	K7PJZ3	Enterobacterial_phage	99.3	7.5e-153
WP_000166968.1|3618303_3618465_-	hypothetical protein	NA	I6R9C7	Salmonella_phage	100.0	1.0e-21
WP_000424138.1|3618485_3618776_-	hypothetical protein	NA	I6RSP4	Salmonella_phage	100.0	2.4e-45
WP_001059982.1|3618909_3619119_-	helix-turn-helix transcriptional regulator	NA	I6S1U2	Salmonella_phage	100.0	2.1e-35
WP_023241112.1|3619228_3619882_+	LexA family transcriptional regulator	NA	C6ZR47	Salmonella_phage	99.5	3.0e-128
WP_149023095.1|3619878_3620118_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023213376.1|3620208_3620454_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000834165.1|3620492_3620696_-	hypothetical protein	NA	A0A192Y6Q5	Salmonella_phage	100.0	9.1e-28
WP_023241436.1|3621099_3621462_+	hypothetical protein	NA	C6ZR44	Salmonella_phage	98.3	1.9e-60
WP_172480784.1|3621592_3622390_+	pentapeptide repeat-containing protein	NA	C6ZR43	Salmonella_phage	100.0	4.0e-42
WP_001748038.1|3622423_3622702_+	hypothetical protein	NA	C6ZR42	Salmonella_phage	100.0	1.3e-45
WP_023241391.1|3622701_3622875_+	hypothetical protein	NA	A0A1D7XFI0	Escherichia_phage	56.4	1.3e-11
WP_000141641.1|3623082_3623241_+|protease	protease FtsH-inhibitory lysogeny factor CIII	protease	Q76H38	Enterobacteria_phage	100.0	2.4e-23
WP_000156731.1|3623221_3623410_+	DUF5444 family protein	NA	I6S647	Salmonella_phage	100.0	3.7e-31
WP_000902089.1|3623399_3623543_+	hypothetical protein	NA	A0A1R3Y5R4	Salmonella_virus	95.7	1.6e-18
WP_023241392.1|3623539_3624247_+	hypothetical protein	NA	I6R0N0	Salmonella_phage	96.2	1.9e-133
WP_001253476.1|3624246_3624531_+	sigma-70 family RNA polymerase sigma factor	NA	Q76H41	Enterobacteria_phage	100.0	1.4e-45
WP_016049833.1|3624577_3624871_+	DUF2856 family protein	NA	I6R984	Salmonella_phage	100.0	2.5e-50
WP_023241393.1|3624881_3625475_+	DUF2737 family protein	NA	G9L663	Escherichia_phage	66.7	2.4e-23
WP_080177705.1|3625471_3625783_+	hypothetical protein	NA	A0A088CQ13	Enterobacteria_phage	93.0	1.0e-46
WP_080177706.1|3625775_3626030_+	hypothetical protein	NA	A0A1V0E5L1	Salmonella_phage	95.2	2.5e-38
WP_080177707.1|3626016_3626508_+	ead/Ea22-like family protein	NA	A0A1B0VCG7	Salmonella_phage	56.2	1.9e-50
WP_080177708.1|3626509_3626974_+	hypothetical protein	NA	A0A0N7C063	Escherichia_phage	94.8	8.4e-77
WP_080177709.1|3626975_3627185_+	hypothetical protein	NA	A0A0F6TJE4	Escherichia_coli_O157_typing_phage	92.8	7.4e-33
WP_023241396.1|3627810_3628149_+	DUF551 domain-containing protein	NA	A0A220NQT9	Salmonella_phage	56.9	2.5e-46
WP_001277764.1|3628245_3628425_+	Eag protein	NA	A0A075B8F7	Enterobacteria_phage	100.0	1.9e-29
WP_023241397.1|3628525_3629161_+	hypothetical protein	NA	A0A075B8I7	Enterobacteria_phage	88.6	9.7e-108
WP_010835580.1|3629390_3630554_+|integrase	site-specific integrase	integrase	A0A2H5BFK7	Salmonella_phage	98.7	5.9e-228
WP_000893240.1|3630759_3632010_-	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	47.5	3.6e-98
3630569:3630614	attR	TGGTGCCGATAATAGGAGTCGAACCTACGACCTTCGCATTACGAAT	NA	NA	NA	NA
WP_001285275.1|3632021_3633125_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	39.8	6.9e-61
WP_001043667.1|3633407_3634460_+	phosphoporin PhoE	NA	Q1MVN1	Enterobacteria_phage	58.8	2.6e-113
>prophage 7
NZ_CP048775	Salmonella enterica subsp. enterica serovar Agona strain SG17-135 chromosome, complete genome	4813284	4049987	4116459	4813284	tRNA,integrase,transposase,tail	Liberibacter_phage(28.57%)	58	4057955:4057971	4119296:4119312
WP_000749992.1|4049987_4050953_-|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	Q2A0A7	Sodalis_phage	53.8	8.2e-66
WP_001188919.1|4051431_4052673_+	multidrug efflux MFS transporter MdtM	NA	NA	NA	NA	NA
WP_001033027.1|4052759_4054031_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_000233266.1|4054250_4055435_+	MFS transporter	NA	NA	NA	NA	NA
WP_000068752.1|4056306_4056978_+	YjiH family protein	NA	NA	NA	NA	NA
WP_000211979.1|4056974_4057436_+	membrane protein	NA	NA	NA	NA	NA
WP_001113057.1|4057448_4058621_+	beta-aspartyl-peptidase	NA	NA	NA	NA	NA
4057955:4057971	attL	TTCCGCCGCGCCCAGCG	NA	NA	NA	NA
WP_000383509.1|4058739_4059648_+	hypochlorite stress DNA-binding transcriptional regulator HypT	NA	NA	NA	NA	NA
WP_000683250.1|4059653_4060388_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_000907671.1|4060626_4061157_-	type VI secretion system tube protein Hcp	NA	NA	NA	NA	NA
WP_001094623.1|4061874_4062888_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_000841654.1|4062888_4063662_-	Uxu operon transcriptional regulator	NA	NA	NA	NA	NA
WP_000588696.1|4064011_4064677_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_001654330.1|4064693_4065155_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_000556763.1|4065359_4066271_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000864870.1|4066622_4067231_-	DUF1062 domain-containing protein	NA	NA	NA	NA	NA
WP_001054380.1|4067718_4067976_+	YjhX family toxin	NA	NA	NA	NA	NA
WP_077905762.1|4067980_4069612_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_000532939.1|4070171_4070888_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_000199890.1|4071365_4072241_-	HNH endonuclease	NA	NA	NA	NA	NA
WP_000941935.1|4072593_4073016_-	fosfomycin resistance glutathione transferase FosA7.2	NA	NA	NA	NA	NA
WP_000481469.1|4074510_4077573_-	HsdR family type I site-specific deoxyribonuclease	NA	A0A220A398	Liberibacter_phage	70.7	0.0e+00
WP_000139625.1|4077575_4078724_-	restriction endonuclease subunit S	NA	A0A240FAT6	Liberibacter_phage	75.0	1.8e-64
WP_000106060.1|4078724_4080224_-	SAM-dependent DNA methyltransferase	NA	A0A220A2U5	Liberibacter_phage	78.5	2.1e-206
WP_000172636.1|4080220_4081720_-	SAM-dependent DNA methyltransferase	NA	A0A220A2U4	Liberibacter_phage	77.4	3.1e-229
WP_000210270.1|4082017_4083001_+	toll/interleukin-1 receptor domain-containing protein	NA	NA	NA	NA	NA
WP_006495884.1|4083269_4083647_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000542997.1|4083793_4084990_-	hypothetical protein	NA	NA	NA	NA	NA
WP_077905772.1|4085178_4086168_-	restriction endonuclease	NA	NA	NA	NA	NA
WP_001255026.1|4086479_4087808_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_001099274.1|4087812_4088118_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_001222753.1|4088864_4089335_+	hypothetical protein	NA	NA	NA	NA	NA
WP_100229112.1|4089697_4090809_-|transposase	IS3 family transposase	transposase	A0A2I6AZV9	Macacine_betaherpesvirus	25.6	1.7e-06
WP_001748005.1|4090872_4091109_+	conjugal transfer protein TraG N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_000121182.1|4091225_4092614_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001052203.1|4092613_4094626_-	DUF87 domain-containing protein	NA	NA	NA	NA	NA
WP_001055457.1|4094622_4095591_-	site-specific DNA-methyltransferase	NA	NA	NA	NA	NA
WP_001748007.1|4096122_4096416_+	hypothetical protein	NA	NA	NA	NA	NA
WP_031602458.1|4097517_4097973_+	NUDIX domain-containing protein	NA	NA	NA	NA	NA
WP_000142420.1|4099865_4100792_+|integrase	site-specific integrase	integrase	NA	NA	NA	NA
WP_096322988.1|4100837_4102093_-|transposase	IS3 family transposase	transposase	Q6H9S3	Enterobacteria_phage	34.5	2.2e-18
WP_001199743.1|4102472_4102781_-	CcdB family protein	NA	NA	NA	NA	NA
WP_000016244.1|4102783_4103023_-	type II toxin-antitoxin system CcdA family antitoxin	NA	NA	NA	NA	NA
WP_000254751.1|4103131_4103380_-	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA	NA
WP_072198402.1|4104681_4107081_-|tail	phage tail tape measure protein	tail	E5FFG5	Burkholderia_phage	32.0	1.1e-98
WP_001747644.1|4107307_4107427_-|tail	GpE family phage tail protein	tail	E5G6Q0	Salmonella_phage	87.2	2.2e-13
WP_001292737.1|4107441_4107753_-|tail	phage tail assembly protein	tail	E5G6P9	Salmonella_phage	66.0	2.4e-27
WP_001185338.1|4108129_4108402_-	ogr/Delta-like zinc finger family protein	NA	A0A2I8TV89	Erwinia_phage	46.9	6.3e-08
WP_001066192.1|4108401_4109163_-	septation initiation protein	NA	NA	NA	NA	NA
WP_000211874.1|4109563_4112236_-	DUF927 domain-containing protein	NA	A0A1B0VP75	Pseudomonas_phage	34.4	2.1e-58
WP_001075576.1|4112232_4112616_-	DUF5375 family protein	NA	NA	NA	NA	NA
WP_001027149.1|4112612_4112897_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001247004.1|4112928_4113288_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001118612.1|4113280_4113457_-	host cell division inhibitor Icd-like protein	NA	Q7M2A7	Enterobacteria_phage	55.6	4.2e-05
WP_000190567.1|4113644_4113830_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000455466.1|4113926_4114157_-	AlpA family phage regulatory protein	NA	NA	NA	NA	NA
WP_001066528.1|4114527_4115166_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000772651.1|4115196_4116459_-|integrase	integrase arm-type DNA-binding domain-containing protein	integrase	Q7M297	Enterobacteria_phage	35.6	2.8e-66
4119296:4119312	attR	CGCTGGGCGCGGCGGAA	NA	NA	NA	NA
>prophage 8
NZ_CP048775	Salmonella enterica subsp. enterica serovar Agona strain SG17-135 chromosome, complete genome	4813284	4394515	4441559	4813284	tRNA,plate,tail	Burkholderia_phage(40.91%)	49	NA	NA
WP_001182229.1|4394515_4395514_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_001039322.1|4395601_4396912_-	conjugal transfer protein TraF	NA	NA	NA	NA	NA
WP_000416271.1|4397158_4397674_+	zinc uptake transcriptional repressor Zur	NA	NA	NA	NA	NA
WP_001030592.1|4397772_4397982_-	CsbD family protein	NA	NA	NA	NA	NA
WP_001575282.1|4398003_4398117_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001128112.1|4398113_4399439_-	MATE family efflux transporter DinF	NA	NA	NA	NA	NA
WP_000646079.1|4399617_4400226_-	repressor LexA	NA	Q9G0C2	Lactococcus_phage	38.0	1.0e-13
WP_000002900.1|4400334_4400703_-	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_000017360.1|4400873_4403294_+	glycerol-3-phosphate 1-O-acyltransferase PlsB	NA	NA	NA	NA	NA
WP_000455249.1|4403392_4404265_-	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA	NA
WP_000019230.1|4404278_4404776_-	chorismate lyase	NA	NA	NA	NA	NA
WP_000782497.1|4404956_4405874_-	maltose operon protein MalM	NA	NA	NA	NA	NA
WP_000973644.1|4406037_4407396_-	maltoporin	NA	NA	NA	NA	NA
WP_000179176.1|4407484_4408594_-	maltose/maltodextrin ABC transporter ATP-binding protein MalK	NA	Q6GZ03	Mycoplasma_phage	47.2	6.2e-17
WP_000695420.1|4408955_4410146_+	maltose/maltodextrin ABC transporter substrate-binding protein MalE	NA	NA	NA	NA	NA
WP_000382563.1|4410277_4411822_+	maltose ABC transporter permease MalF	NA	NA	NA	NA	NA
WP_001252085.1|4411836_4412727_+	maltose ABC transporter permease MalG	NA	NA	NA	NA	NA
WP_000982752.1|4412892_4413303_-	phosphate-starvation-inducible protein PsiE	NA	NA	NA	NA	NA
WP_000750800.1|4413445_4415542_-	YjbH domain-containing protein	NA	NA	NA	NA	NA
WP_000977889.1|4415541_4416279_-	capsule biosynthesis GfcC family protein	NA	NA	NA	NA	NA
WP_125469230.1|4416275_4416944_-	YjbF family lipoprotein	NA	NA	NA	NA	NA
WP_023165043.1|4416977_4417220_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000790027.1|4417663_4419313_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_000136394.1|4419657_4421007_+	lysine-sensitive aspartokinase 3	NA	NA	NA	NA	NA
WP_000615248.1|4421137_4421485_-	DNA-binding protein	NA	Q6QIE8	Burkholderia_phage	51.5	4.9e-21
WP_001226439.1|4422061_4422349_+	membrane protein	NA	Q6QIC8	Burkholderia_phage	48.1	3.0e-16
WP_001270445.1|4422351_4422957_+	lytic transglycosylase domain-containing protein	NA	Q5ZQZ1	Pseudomonas_phage	61.0	5.9e-62
WP_000777266.1|4422969_4423284_+	membrane protein	NA	Q6QIC4	Burkholderia_phage	49.1	6.4e-20
WP_000449437.1|4423442_4423898_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000875314.1|4423894_4424092_+	hypothetical protein	NA	Q6QIB1	Burkholderia_phage	52.9	8.6e-07
WP_000729845.1|4424081_4425509_+|tail	phage tail sheath family protein	tail	A4JWK5	Burkholderia_virus	71.6	2.8e-195
WP_000907494.1|4425508_4426033_+|tail	phage major tail tube protein	tail	Q6QIA9	Burkholderia_phage	69.5	2.8e-68
WP_001003644.1|4426084_4426402_+|tail	phage tail assembly protein	tail	NA	NA	NA	NA
WP_001185654.1|4426361_4426490_+|tail	GpE family phage tail protein	tail	NA	NA	NA	NA
WP_001262488.1|4426586_4428941_+|tail	phage tail tape measure protein	tail	A4JWL0	Burkholderia_virus	30.6	3.1e-66
WP_000271418.1|4428940_4429894_+|tail	phage tail protein	tail	A4JWL1	Burkholderia_virus	50.8	3.9e-36
WP_001269716.1|4429893_4430103_+|tail	tail protein X	tail	A4JWL2	Burkholderia_virus	60.3	9.8e-17
WP_000818151.1|4430090_4431134_+	phage late control D family protein	NA	Q6QIA2	Burkholderia_phage	45.3	8.5e-77
WP_000679392.1|4431143_4431866_+|plate	phage baseplate assembly protein V	plate	A0A067ZIM2	Vibrio_phage	42.0	3.9e-12
WP_000593184.1|4432193_4432556_+	GtrA family protein	NA	U5P0S6	Shigella_phage	70.8	9.6e-44
WP_000703629.1|4432552_4433482_+	glycosyltransferase family 2 protein	NA	S5FKN0	Shigella_phage	84.1	7.9e-151
WP_000632050.1|4433481_4435029_+	hypothetical protein	NA	B9UDL6	Salmonella_phage	29.9	2.5e-48
WP_001093501.1|4435192_4435552_+	GPW/gp25 family protein	NA	Q6QIA0	Burkholderia_phage	64.2	2.8e-35
WP_000951740.1|4435542_4436658_+|plate	baseplate J/gp47 family protein	plate	Q6QI99	Burkholderia_phage	51.2	2.9e-99
WP_000359502.1|4436650_4437283_+|tail	phage tail protein I	tail	Q6QI98	Burkholderia_phage	56.4	1.1e-23
WP_001747515.1|4437285_4439031_+|tail	tail fiber protein	tail	A0A0M3ULF6	Salmonella_phage	51.7	1.2e-51
WP_023785434.1|4439035_4439641_+	DUF4376 domain-containing protein	NA	NA	NA	NA	NA
WP_000084338.1|4439637_4440093_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000587738.1|4440830_4441559_+	hypothetical protein	NA	A0A077SLK3	Escherichia_phage	37.3	5.6e-35
>prophage 1
NZ_CP048776	Salmonella enterica subsp. enterica serovar Agona strain SG17-135 plasmid pSG17-135-HI2, complete sequence	311615	58576	97962	311615	integrase,protease,transposase	Escherichia_phage(33.33%)	42	53223:53236	64020:64033
53223:53236	attL	CGGGATGAATATAA	NA	NA	NA	NA
WP_000795947.1|58576_59752_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_001285422.1|59922_60135_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000255946.1|61064_62087_+|transposase	IS21-like element IS100 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	99.4	4.6e-200
WP_001297096.1|62086_62866_+	AAA family ATPase	NA	A0A2L1IVB6	Escherichia_phage	99.6	4.5e-139
WP_001284313.1|63703_65203_-	kinase	NA	NA	NA	NA	NA
64020:64033	attR	CGGGATGAATATAA	NA	NA	NA	NA
WP_000081622.1|65228_66866_-	protein phosphatase 2C domain-containing protein	NA	NA	NA	NA	NA
WP_001253653.1|66865_67906_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_001253658.1|67991_68630_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_000116681.1|68629_69271_-	TerD family protein	NA	NA	NA	NA	NA
WP_024179285.1|69293_69932_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_001176767.1|70394_70862_-	tellurium resistance protein TerW	NA	NA	NA	NA	NA
WP_000506887.1|70879_72088_-	DUF4236 domain-containing protein	NA	NA	NA	NA	NA
WP_000797366.1|72098_73055_-	HpcH/HpaI aldolase/citrate lyase family protein	NA	NA	NA	NA	NA
WP_001182411.1|73054_74134_-|protease	cysteine protease StiP family protein	protease	A0A172Q0S8	Acinetobacter_phage	33.8	8.1e-38
WP_001040059.1|74135_74909_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001285478.1|74901_76044_-	phosphoribosyltransferase domain-containing protein	NA	A0A172Q0Y1	Acinetobacter_phage	35.4	1.7e-30
WP_001035162.1|76053_77112_-	ATP-grasp domain-containing protein	NA	NA	NA	NA	NA
WP_000254136.1|77435_78017_+	TerD family protein	NA	K4JRX3	Caulobacter_phage	30.0	6.3e-13
WP_001054787.1|78016_79174_+	TerD family protein	NA	NA	NA	NA	NA
WP_000007448.1|79196_79652_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_000255079.1|79674_80715_+	tellurium resistance membrane protein TerC	NA	K7QKE8	Escherichia_phage	48.0	2.2e-77
WP_000116677.1|80763_81342_+	tellurium resistance membrane protein TerD	NA	A0A2P1N0L4	Streptomyces_phage	40.0	3.3e-06
WP_000301242.1|81409_81985_+	TerD family protein	NA	K4JRX3	Caulobacter_phage	41.6	8.7e-31
WP_001053338.1|82413_83655_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_000077926.1|84217_84499_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000398480.1|84548_84740_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000952349.1|84963_86136_+|transposase	IS21 family transposase	transposase	U5N3F9	Enterobacteria_phage	99.2	5.4e-229
WP_000544828.1|86135_86933_+	ATP-binding protein	NA	U5N3V8	Enterobacteria_phage	100.0	6.6e-146
WP_065311125.1|86971_87307_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000341066.1|87679_88072_+	hypothetical protein	NA	NA	NA	NA	NA
WP_024136327.1|88675_88969_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000088046.1|88973_90299_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_000134171.1|90359_90566_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000985911.1|90667_91078_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001572439.1|91090_91906_+	HNH endonuclease	NA	G0X580	Salmonella_phage	36.5	1.1e-15
WP_001043843.1|92159_92585_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001224687.1|93133_93442_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000784387.1|93457_94315_+	HNH endonuclease	NA	G0X580	Salmonella_phage	34.2	3.9e-11
WP_001194555.1|94376_94580_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001067855.1|95268_95973_+|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
WP_000018321.1|96266_97082_-	aminoglycoside O-phosphotransferase APH(3')-Ia	NA	A0A193DTG4	Autographa_californica_nuclear_polyhedrosis_virus	98.2	4.8e-160
WP_001067855.1|97257_97962_-|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
>prophage 2
NZ_CP048776	Salmonella enterica subsp. enterica serovar Agona strain SG17-135 plasmid pSG17-135-HI2, complete sequence	311615	107004	143778	311615	transposase	Escherichia_phage(33.33%)	40	NA	NA
WP_021546935.1|107004_108009_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_001067855.1|108275_108980_+|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
WP_001044210.1|108985_109126_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001366550.1|109611_110349_+	recombinase family protein	NA	NA	NA	NA	NA
WP_000743213.1|110345_110570_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001120888.1|110780_112274_+|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
WP_012728215.1|112304_113189_+	DUF3363 domain-containing protein	NA	NA	NA	NA	NA
WP_065311137.1|113405_114620_+	chloramphenicol/florfenicol efflux MFS transporter FloR	NA	S4TR35	Salmonella_phage	28.7	3.2e-19
WP_001255015.1|114647_114953_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_110459201.1|115219_115537_-	tetracycline resistance protein	NA	NA	NA	NA	NA
WP_001067855.1|115561_116266_+|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
WP_172480786.1|116299_116545_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_001043260.1|116631_117447_-	sulfonamide-resistant dihydropteroate synthase Sul2	NA	A0A0B5J4J5	Pandoravirus	27.6	5.9e-09
WP_000954592.1|117776_117953_+	DUF4102 domain-containing protein	NA	T1S9J3	Salmonella_phage	68.6	1.0e-06
WP_000427619.1|118134_119139_-|transposase	IS110-like element IS5075 family transposase	transposase	NA	NA	NA	NA
WP_000429836.1|119217_119652_-	Hg(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_001294663.1|119723_120074_+	mercuric transport protein MerT	NA	NA	NA	NA	NA
WP_065203552.1|120087_120363_+	mercury resistance system periplasmic binding protein MerP	NA	NA	NA	NA	NA
WP_001340589.1|120398_120821_+	organomercurial transporter MerC	NA	NA	NA	NA	NA
WP_000105636.1|120872_122567_+	mercury(II) reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	8.8e-39
WP_001277456.1|122584_122947_+	mercury resistance co-regulator MerD	NA	NA	NA	NA	NA
WP_000993386.1|122943_123180_+	broad-spectrum mercury transporter MerE	NA	NA	NA	NA	NA
WP_001300294.1|123215_123884_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_001067855.1|125273_125978_+|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
WP_032491824.1|126973_127765_+	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA22	NA	NA	NA	NA	NA
WP_000939727.1|127896_128718_+	lincosamide nucleotidyltransferase Lnu(F)	NA	NA	NA	NA	NA
WP_001067855.1|128870_129575_+|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
WP_011264039.1|129647_129887_+	macrolide transporter	NA	A0A2K5B2B5	Erysipelothrix_phage	46.2	9.5e-08
WP_000612791.1|130032_130896_+	SDR family oxidoreductase	NA	W8CYX9	Bacillus_phage	31.0	2.5e-05
WP_001354008.1|130933_131179_+	GrpB family protein	NA	NA	NA	NA	NA
WP_000034420.1|131647_132439_+	sulfonamide-resistant dihydropteroate synthase Sul3	NA	A0A0B5J4J5	Pandoravirus	26.5	1.2e-14
WP_000490638.1|133401_134067_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001426317.1|134124_134505_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000090707.1|135257_136100_+	TnsA endonuclease N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_000351437.1|136086_138210_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_001049180.1|138209_139658_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_001324699.1|139698_141255_+	TniQ family protein	NA	NA	NA	NA	NA
WP_000262423.1|141266_142193_+	hypothetical protein	NA	NA	NA	NA	NA
WP_172480787.1|142545_142788_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000654812.1|142809_143778_+|transposase	IS5-like element IS903B family transposase	transposase	A0A1B0VFY5	Salmonella_phage	99.7	2.1e-186
>prophage 3
NZ_CP048776	Salmonella enterica subsp. enterica serovar Agona strain SG17-135 plasmid pSG17-135-HI2, complete sequence	311615	174561	219684	311615	transposase	Escherichia_phage(42.86%)	40	NA	NA
WP_000654812.1|174561_175530_+|transposase	IS5-like element IS903B family transposase	transposase	A0A1B0VFY5	Salmonella_phage	99.7	2.1e-186
WP_000185304.1|176008_176470_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000074418.1|176499_176907_+	hypothetical protein	NA	NA	NA	NA	NA
WP_029698059.1|176957_177275_-	hypothetical protein	NA	NA	NA	NA	NA
WP_031613424.1|177651_178002_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001214976.1|179851_180259_+	cysteine hydrolase	NA	NA	NA	NA	NA
WP_000058717.1|180396_181281_+	EamA family transporter	NA	NA	NA	NA	NA
WP_001493765.1|181312_182512_-	tetracycline efflux MFS transporter Tet(A)	NA	NA	NA	NA	NA
WP_001493764.1|182617_183268_+	tetracycline resistance transcriptional repressor TetR(A)	NA	NA	NA	NA	NA
WP_000844627.1|183299_183542_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_000480968.1|183847_184684_-	aminoglycoside O-phosphotransferase APH(6)-Id	NA	NA	NA	NA	NA
WP_001067855.1|185089_185794_-|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
WP_001120888.1|186116_187610_-|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
WP_000743213.1|187820_188045_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001067855.1|188536_189241_-|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
WP_014837927.1|189277_190405_-	DUF3883 domain-containing protein	NA	NA	NA	NA	NA
WP_000248278.1|190455_190683_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000951934.1|190706_190898_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000587837.1|191379_191922_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_000557454.1|191934_192795_-	aminoglycoside N-acetyltransferase AAC(3)-IId	NA	NA	NA	NA	NA
WP_001067855.1|193111_193816_-|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
WP_012477595.1|195007_195865_-	class A beta-lactamase LAP-2	NA	Q1MVP3	Enterobacteria_phage	61.1	2.0e-92
WP_032623598.1|195929_197660_-	peptidoglycan synthetase FtsI	NA	NA	NA	NA	NA
WP_000027057.1|198068_198929_-	class A broad-spectrum beta-lactamase TEM-1	NA	Q1MVP3	Enterobacteria_phage	100.0	4.6e-161
WP_001235713.1|199111_199669_-	recombinase family protein	NA	Q1MVP4	Enterobacteria_phage	100.0	7.0e-94
WP_000608644.1|200232_201495_+|transposase	IS1380-like element ISEc9 family transposase	transposase	A0A1B0VDR3	Salmonella_phage	100.0	1.3e-39
WP_015387340.1|201750_202626_+	class A extended-spectrum beta-lactamase CTX-M-55	NA	A0A1B0VBP7	Salmonella_phage	82.1	2.4e-125
WP_001393253.1|202672_203005_-	cupin fold metalloprotein, WbuC family	NA	NA	NA	NA	NA
WP_001516695.1|207266_207923_+	quinolone resistance pentapeptide repeat protein QnrS1	NA	NA	NA	NA	NA
WP_001493761.1|208702_210094_-|transposase	ISKra4-like element ISKpn19 family transposase	transposase	NA	NA	NA	NA
WP_001493762.1|210130_210703_-	recombinase family protein	NA	M9Q1K0	Clostridium_phage	39.4	3.4e-19
WP_012477564.1|210839_211430_-	plasmid pRiA4b ORF-3 family protein	NA	NA	NA	NA	NA
WP_001067855.1|211536_212241_-|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
WP_001137892.1|213063_213648_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000004159.1|213647_214886_-	MFS transporter	NA	NA	NA	NA	NA
WP_000219391.1|214882_215788_-	Mph(A) family macrolide 2'-phosphotransferase	NA	NA	NA	NA	NA
WP_001067855.1|215909_216614_-|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
WP_000237816.1|217290_217743_-	NAD(+)--rifampin ADP-ribosyltransferase Arr-2	NA	NA	NA	NA	NA
WP_004201280.1|217853_218327_-	trimethoprim-resistant dihydrofolate reductase DfrA14	NA	G3MBI7	Bacillus_virus	28.9	8.4e-16
WP_001067855.1|218979_219684_-|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
>prophage 4
NZ_CP048776	Salmonella enterica subsp. enterica serovar Agona strain SG17-135 plasmid pSG17-135-HI2, complete sequence	311615	299777	308055	311615	transposase	Salmonella_phage(57.14%)	8	NA	NA
WP_000654806.1|299777_300746_+|transposase	IS5 family transposase	transposase	A0A1B0VFY5	Salmonella_phage	94.1	4.4e-176
WP_001000406.1|301062_302598_-|transposase	IS66 family transposase	transposase	A0A0P0ZBS5	Stx2-converting_phage	88.1	4.8e-262
WP_000609174.1|302647_302995_-	IS66 family insertion sequence element accessory protein TnpB	NA	A0A0P0ZDM8	Stx2-converting_phage	95.7	2.7e-59
WP_001201739.1|302991_303375_-	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZCV4	Stx2-converting_phage	36.3	4.1e-13
WP_000070863.1|303597_303774_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000096324.1|303770_305462_-	DUF4942 domain-containing protein	NA	J9Q747	Salmonella_phage	31.0	2.6e-67
WP_000114859.1|305709_306873_-	hypothetical protein	NA	A0A1P8DTT7	Salmonella_phage	32.1	1.3e-17
WP_001121575.1|307242_308055_+	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA	A0A1C9II58	Salmonella_phage	38.5	3.0e-45
