assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_012109075.1_ASM1210907v1	NZ_CP050810	Trueperella pyogenes strain jx18 chromosome, complete genome	1	3978-7421	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas7,cas5,cas6e,cas1,cas2	cas7,cas5,cas6e,cas1,cas2,DinG,DEDDh,WYL,cas4,csa3,cas3,cas8e,cse2gr11	Unclear	GTGGTCCCCGCGCAGGCGGGGATGAGCC,GTGGTCCCCGCGCAGGCGGGGATGAGCC,GTGGTCCCCGCGCAGGCGGGGATGAGCC	28,28,28	0	0	NA	NA	I-E:I-E:I-E	55,56,56	56	Unclear	cas7,cas5,cas6e,cas1,cas2,DinG,DEDDh,WYL,cas4,csa3,cas3,cas8e,cse2gr11	NA,NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	cas7|381aa|up_4|NZ_CP050810.1_0_1143_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|235aa|up_3|NZ_CP050810.1_1146_1851_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|223aa|up_2|NZ_CP050810.1_1850_2519_+	pfam08798, CRISPR_assoc, CRISPR associated protein	cas1|311aa|up_1|NZ_CP050810.1_2521_3454_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|115aa|up_0|NZ_CP050810.1_3458_3803_+	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978)	NA|99aa|down_0|NZ_CP050810.1_7591_7888_-	COG3668, ParE, Plasmid stabilization system protein [General function prediction only]	NA|68aa|down_1|NZ_CP050810.1_7915_8119_-	pfam03693, ParD_antitoxin, Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH	NA|288aa|down_2|NZ_CP050810.1_8266_9130_-	pfam07751, Abi_2, Abi-like protein	NA|205aa|down_3|NZ_CP050810.1_9383_9998_-	pfam01381, HTH_3, Helix-turn-helix	NA|566aa|down_4|NZ_CP050810.1_10263_11961_-	cd11332, AmyAc_OligoGlu_TS, Alpha amylase catalytic domain found in oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase), trehalose synthase (also called maltose alpha-D-glucosyltransferase), and related proteins	NA|292aa|down_5|NZ_CP050810.1_12014_12890_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|299aa|down_6|NZ_CP050810.1_12898_13795_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|425aa|down_7|NZ_CP050810.1_13797_15072_-	cd14748, PBP2_UgpB, The periplasmic-binding component of ABC transport system specific for sn-glycerol-3-phosphate; possesses type 2 periplasmic binding fold	NA|434aa|down_8|NZ_CP050810.1_15156_16458_+	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|911aa|down_9|NZ_CP050810.1_17559_20292_+	PRK09279, PRK09279, pyruvate phosphate dikinase; Provisional
GCF_012109075.1_ASM1210907v1	NZ_CP050810	Trueperella pyogenes strain jx18 chromosome, complete genome	2	28425-28523	2	CRISPRCasFinder	no		cas7,cas5,cas6e,cas1,cas2,DinG,DEDDh,WYL,cas4,csa3,cas3,cas8e,cse2gr11	Orphan	GAGAAGGCCGCCCGAGAGGCCGC	23	0	0	NA	NA	NA	1	1	Orphan	cas7,cas5,cas6e,cas1,cas2,DinG,DEDDh,WYL,cas4,csa3,cas3,cas8e,cse2gr11	NA,NA	NA|566aa|up_9|NZ_CP050810.1_10263_11961_-	cd11332, AmyAc_OligoGlu_TS, Alpha amylase catalytic domain found in oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase), trehalose synthase (also called maltose alpha-D-glucosyltransferase), and related proteins	NA|292aa|up_8|NZ_CP050810.1_12014_12890_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|299aa|up_7|NZ_CP050810.1_12898_13795_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|425aa|up_6|NZ_CP050810.1_13797_15072_-	cd14748, PBP2_UgpB, The periplasmic-binding component of ABC transport system specific for sn-glycerol-3-phosphate; possesses type 2 periplasmic binding fold	NA|434aa|up_5|NZ_CP050810.1_15156_16458_+	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|911aa|up_4|NZ_CP050810.1_17559_20292_+	PRK09279, PRK09279, pyruvate phosphate dikinase; Provisional	NA|964aa|up_3|NZ_CP050810.1_20547_23439_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|462aa|up_2|NZ_CP050810.1_23519_24905_+	pfam18755, RAMA, Restriction Enzyme Adenine Methylase Associated	NA|335aa|up_1|NZ_CP050810.1_24951_25956_-	COG2267, PldB, Lysophospholipase [Lipid metabolism]	NA|421aa|up_0|NZ_CP050810.1_25988_27251_-	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|176aa|down_0|NZ_CP050810.1_29240_29768_-	pfam00719, Pyrophosphatase, Inorganic pyrophosphatase	NA|473aa|down_1|NZ_CP050810.1_29836_31255_+	pfam02113, Peptidase_S13, D-Ala-D-Ala carboxypeptidase 3 (S13) family	NA|288aa|down_2|NZ_CP050810.1_31351_32215_+	TIGR03883, DUF2342_F420, uncharacterized protein, coenzyme F420 biosynthesis associated	NA|348aa|down_3|NZ_CP050810.1_32214_33258_+	cd01992, PP-ATPase, N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]	NA|186aa|down_4|NZ_CP050810.1_33254_33812_+	COG0634, Hpt, Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]	NA|713aa|down_5|NZ_CP050810.1_33812_35951_+	TIGR01241, ATP-dependent_zinc_metalloprotease_FtsH, ATP-dependent metalloprotease FtsH	NA|188aa|down_6|NZ_CP050810.1_35947_36511_+	PRK09347, folE, GTP cyclohydrolase I; Provisional	NA|260aa|down_7|NZ_CP050810.1_36529_37309_+	cd00739, DHPS, DHPS subgroup of Pterin binding enzymes	NA|276aa|down_8|NZ_CP050810.1_37320_38148_+	COG0801, FolK, 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]	NA|159aa|down_9|NZ_CP050810.1_38161_38638_+	pfam11377, DUF3180, Protein of unknown function (DUF3180)
GCF_012109075.1_ASM1210907v1	NZ_CP050810	Trueperella pyogenes strain jx18 chromosome, complete genome	3	28623-28801	3	CRISPRCasFinder	no		cas7,cas5,cas6e,cas1,cas2,DinG,DEDDh,WYL,cas4,csa3,cas3,cas8e,cse2gr11	Orphan	GAGAAGGCCGCCCGAGAGGCCGC	23	0	0	NA	NA	NA	3	3	Orphan	cas7,cas5,cas6e,cas1,cas2,DinG,DEDDh,WYL,cas4,csa3,cas3,cas8e,cse2gr11	NA,NA	NA|566aa|up_9|NZ_CP050810.1_10263_11961_-	cd11332, AmyAc_OligoGlu_TS, Alpha amylase catalytic domain found in oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase), trehalose synthase (also called maltose alpha-D-glucosyltransferase), and related proteins	NA|292aa|up_8|NZ_CP050810.1_12014_12890_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|299aa|up_7|NZ_CP050810.1_12898_13795_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|425aa|up_6|NZ_CP050810.1_13797_15072_-	cd14748, PBP2_UgpB, The periplasmic-binding component of ABC transport system specific for sn-glycerol-3-phosphate; possesses type 2 periplasmic binding fold	NA|434aa|up_5|NZ_CP050810.1_15156_16458_+	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|911aa|up_4|NZ_CP050810.1_17559_20292_+	PRK09279, PRK09279, pyruvate phosphate dikinase; Provisional	NA|964aa|up_3|NZ_CP050810.1_20547_23439_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|462aa|up_2|NZ_CP050810.1_23519_24905_+	pfam18755, RAMA, Restriction Enzyme Adenine Methylase Associated	NA|335aa|up_1|NZ_CP050810.1_24951_25956_-	COG2267, PldB, Lysophospholipase [Lipid metabolism]	NA|421aa|up_0|NZ_CP050810.1_25988_27251_-	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|176aa|down_0|NZ_CP050810.1_29240_29768_-	pfam00719, Pyrophosphatase, Inorganic pyrophosphatase	NA|473aa|down_1|NZ_CP050810.1_29836_31255_+	pfam02113, Peptidase_S13, D-Ala-D-Ala carboxypeptidase 3 (S13) family	NA|288aa|down_2|NZ_CP050810.1_31351_32215_+	TIGR03883, DUF2342_F420, uncharacterized protein, coenzyme F420 biosynthesis associated	NA|348aa|down_3|NZ_CP050810.1_32214_33258_+	cd01992, PP-ATPase, N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]	NA|186aa|down_4|NZ_CP050810.1_33254_33812_+	COG0634, Hpt, Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]	NA|713aa|down_5|NZ_CP050810.1_33812_35951_+	TIGR01241, ATP-dependent_zinc_metalloprotease_FtsH, ATP-dependent metalloprotease FtsH	NA|188aa|down_6|NZ_CP050810.1_35947_36511_+	PRK09347, folE, GTP cyclohydrolase I; Provisional	NA|260aa|down_7|NZ_CP050810.1_36529_37309_+	cd00739, DHPS, DHPS subgroup of Pterin binding enzymes	NA|276aa|down_8|NZ_CP050810.1_37320_38148_+	COG0801, FolK, 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]	NA|159aa|down_9|NZ_CP050810.1_38161_38638_+	pfam11377, DUF3180, Protein of unknown function (DUF3180)
GCF_012109075.1_ASM1210907v1	NZ_CP050810	Trueperella pyogenes strain jx18 chromosome, complete genome	4	1610403-1610490	4	CRISPRCasFinder	no		cas7,cas5,cas6e,cas1,cas2,DinG,DEDDh,WYL,cas4,csa3,cas3,cas8e,cse2gr11	Orphan	AGACTGCCGAAAAAGACGCAGCCGA	25	1	3	1610428-1610465|1610428-1610465|1610428-1610465	NZ_CP050810.1_1609321-1609358|NZ_CP050810.1_1609369-1609406|NZ_CP050810.1_1609552-1609589	NA	1	1	Orphan	cas7,cas5,cas6e,cas1,cas2,DinG,DEDDh,WYL,cas4,csa3,cas3,cas8e,cse2gr11	NA,NA|294aa|down_0|NZ_CP050810.1_1611377_1612259_-	NA|522aa|up_9|NZ_CP050810.1_1595781_1597347_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|241aa|up_8|NZ_CP050810.1_1597375_1598098_-	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like	NA|263aa|up_7|NZ_CP050810.1_1598094_1598883_-	COG0300, DltE, Short-chain dehydrogenases of various substrate specificities [General function prediction only]	NA|338aa|up_6|NZ_CP050810.1_1598985_1599999_+	COG4339, COG4339, Uncharacterized protein conserved in bacteria [Function unknown]	NA|542aa|up_5|NZ_CP050810.1_1602072_1603698_-	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|204aa|up_4|NZ_CP050810.1_1603966_1604578_-	pfam13399, LytR_C, LytR cell envelope-related transcriptional attenuator	NA|100aa|up_3|NZ_CP050810.1_1604587_1604887_-	pfam11662, DUF3263, Protein of unknown function (DUF3263)	NA|223aa|up_2|NZ_CP050810.1_1604974_1605643_+	PRK05254, PRK05254, uracil-DNA glycosylase; Provisional	NA|441aa|up_1|NZ_CP050810.1_1605674_1606997_-	pfam07221, GlcNAc_2-epim, N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase)	NA|409aa|up_0|NZ_CP050810.1_1607202_1608429_+	cd06174, MFS, Major Facilitator Superfamily	NA|294aa|down_0|NZ_CP050810.1_1611377_1612259_-	NA	NA|299aa|down_1|NZ_CP050810.1_1612260_1613157_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|275aa|down_2|NZ_CP050810.1_1613983_1614808_-	cd03019, DsbA_DsbA, DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold	NA|513aa|down_3|NZ_CP050810.1_1614880_1616419_-	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|396aa|down_4|NZ_CP050810.1_1616677_1617865_+	PRK11650, ugpC, sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA|424aa|down_5|NZ_CP050810.1_1617999_1619271_+	pfam13224, DUF4032, Domain of unknown function (DUF4032)	NA|368aa|down_6|NZ_CP050810.1_1619267_1620371_-	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|389aa|down_7|NZ_CP050810.1_1620403_1621570_-	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|417aa|down_8|NZ_CP050810.1_1621693_1622944_+	cd13585, PBP2_TMBP_like, The periplasmic-binding component of ABC transport systems specific for trehalose/maltose and similar oligosaccharides; possess type 2 periplasmic binding fold	NA|276aa|down_9|NZ_CP050810.1_1623109_1623937_+	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]
GCF_012109075.1_ASM1210907v1	NZ_CP050810	Trueperella pyogenes strain jx18 chromosome, complete genome	5	1739486-1739567	5	CRISPRCasFinder	no		cas7,cas5,cas6e,cas1,cas2,DinG,DEDDh,WYL,cas4,csa3,cas3,cas8e,cse2gr11	Orphan	CGGGTTTAAGTACCGAGAATCGCG	24	0	0	NA	NA	NA	1	1	Orphan	cas7,cas5,cas6e,cas1,cas2,DinG,DEDDh,WYL,cas4,csa3,cas3,cas8e,cse2gr11	NA|370aa|up_9|NZ_CP050810.1_1730840_1731950_+,NA|149aa|up_5|NZ_CP050810.1_1734930_1735377_+,NA|488aa|down_2|NZ_CP050810.1_1741747_1743211_+	NA|370aa|up_9|NZ_CP050810.1_1730840_1731950_+	NA	NA|273aa|up_8|NZ_CP050810.1_1731855_1732674_-	COG1183, PssA, Phosphatidylserine synthase [Lipid metabolism]	NA|324aa|up_7|NZ_CP050810.1_1732762_1733734_-	pfam00762, Ferrochelatase, Ferrochelatase	NA|320aa|up_6|NZ_CP050810.1_1733797_1734757_-	cd19143, AKR_AKR6C1_2, AKR6C family of aldo-keto reductase (AKR)	NA|149aa|up_5|NZ_CP050810.1_1734930_1735377_+	NA	NA|274aa|up_4|NZ_CP050810.1_1735373_1736195_-	pfam01487, DHquinase_I, Type I 3-dehydroquinase	NA|195aa|up_3|NZ_CP050810.1_1736356_1736941_+	PRK00708, PRK00708, twin-arginine translocase subunit TatB	NA|250aa|up_2|NZ_CP050810.1_1736967_1737717_+	pfam14256, YwiC, YwiC-like protein	NA|350aa|up_1|NZ_CP050810.1_1737847_1738897_-	PRK03321, PRK03321, putative aminotransferase; Provisional	NA|133aa|up_0|NZ_CP050810.1_1738989_1739388_+	COG1950, COG1950, Predicted membrane protein [Function unknown]	NA|467aa|down_0|NZ_CP050810.1_1739659_1741060_+	PRK09285, PRK09285, adenylosuccinate lyase; Provisional	NA|216aa|down_1|NZ_CP050810.1_1741065_1741713_+	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|488aa|down_2|NZ_CP050810.1_1741747_1743211_+	NA	NA|75aa|down_3|NZ_CP050810.1_1743411_1743636_+	COG2608, CopZ, Copper chaperone [Inorganic ion transport and metabolism]	NA|765aa|down_4|NZ_CP050810.1_1743635_1745930_+	cd02094, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B	NA|886aa|down_5|NZ_CP050810.1_1745962_1748620_+	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region	NA|1723aa|down_6|NZ_CP050810.1_1748761_1753930_-	cd15482, Sialidase_non-viral, Non-viral sialidases	NA|560aa|down_7|NZ_CP050810.1_1754166_1755846_+	PRK07564, PRK07564, phosphoglucomutase; Validated	NA|190aa|down_8|NZ_CP050810.1_1756290_1756860_+	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|585aa|down_9|NZ_CP050810.1_1757002_1758757_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
