assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_012054045.1_ASM1205404v1	NZ_CP050779	Salmonella enterica subsp. enterica serovar Indiana strain SI85 chromosome, complete genome	1	585016-585116	1	CRISPRCasFinder	no		cas3,PD-DExK,DEDDh,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DinG	Orphan	GCTTCAGTGGCGAGCGTCGTGAA	23	0	0	NA	NA	NA	1	1	Orphan	cas3,PD-DExK,DEDDh,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DinG	NA,NA|177aa|down_1|NZ_CP050779.1_586634_587165_-	NA|448aa|up_9|NZ_CP050779.1_571093_572437_-	PRK05370, PRK05370, argininosuccinate synthase; Validated	NA|151aa|up_8|NZ_CP050779.1_573064_573517_+	PRK00092, PRK00092, ribosome maturation protein RimP; Reviewed	NA|501aa|up_7|NZ_CP050779.1_573544_575047_+	PRK09202, nusA, transcription elongation factor NusA; Validated	NA|893aa|up_6|NZ_CP050779.1_575071_577750_+	PRK05306, infB, translation initiation factor IF-2; Validated	NA|134aa|up_5|NZ_CP050779.1_577971_578373_+	PRK00521, rbfA, 30S ribosome-binding factor RbfA	NA|315aa|up_4|NZ_CP050779.1_578372_579317_+	PRK05033, truB, tRNA pseudouridine synthase B; Provisional	NA|90aa|up_3|NZ_CP050779.1_579467_579737_+	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed	NA|712aa|up_2|NZ_CP050779.1_579978_582114_+	PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase; Provisional	NA|295aa|up_1|NZ_CP050779.1_582223_583108_+	PRK11189, PRK11189, lipoprotein NlpI; Provisional	NA|27aa|up_0|NZ_CP050779.1_583213_583294_+	NF033440, small_YrbN, protein YrbN	NA|415aa|down_0|NZ_CP050779.1_585329_586574_+	PRK10483, PRK10483, tryptophan permease; Provisional	NA|177aa|down_1|NZ_CP050779.1_586634_587165_-	NA	NA|240aa|down_2|NZ_CP050779.1_587323_588043_+	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown]	NA|336aa|down_3|NZ_CP050779.1_588020_589028_-	PRK10508, PRK10508, luciferase-like monooxygenase	NA|299aa|down_4|NZ_CP050779.1_589205_590102_-	PRK15447, PRK15447, putative protease; Provisional	NA|332aa|down_5|NZ_CP050779.1_590092_591088_-	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|175aa|down_6|NZ_CP050779.1_591304_591829_+	COG3154, COG3154, Putative lipid carrier protein [Lipid metabolism]	NA|168aa|down_7|NZ_CP050779.1_591822_592326_+	COG3153, COG3153, Predicted acetyltransferase [General function prediction only]	NA|106aa|down_8|NZ_CP050779.1_592312_592630_-	PRK00329, PRK00329, GIY-YIG nuclease superfamily protein; Validated	NA|148aa|down_9|NZ_CP050779.1_592667_593111_+	PRK03467, PRK03467, hypothetical protein; Provisional
GCF_012054045.1_ASM1205404v1	NZ_CP050779	Salmonella enterica subsp. enterica serovar Indiana strain SI85 chromosome, complete genome	2	960893-961959	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,DEDDh,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DinG	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACC,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	28,29,29	0	0	NA	NA	I-E:I-E:I-E	16,17,17	17	TypeI-E	cas3,PD-DExK,DEDDh,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DinG	NA,NA	NA|179aa|up_9|NZ_CP050779.1_949436_949973_-	PRK15260, PRK15260, fimbrial protein SteF; Provisional	NA|157aa|up_8|NZ_CP050779.1_949969_950440_-	PRK15276, PRK15276, putative fimbrial subunit SteE; Provisional	NA|169aa|up_7|NZ_CP050779.1_950454_950961_-	PRK15275, PRK15275, putative fimbrial protein SteD; Provisional	NA|258aa|up_6|NZ_CP050779.1_950980_951754_-	PRK15274, PRK15274, putative periplasmic fimbrial chaperone protein SteC; Provisional	NA|900aa|up_5|NZ_CP050779.1_951766_954466_-	PRK15273, PRK15273, fimbrial biogenesis outer membrane usher protein	NA|196aa|up_4|NZ_CP050779.1_954545_955133_-	PRK15261, PRK15261, fimbrial protein SteA; Provisional	NA|267aa|up_3|NZ_CP050779.1_955742_956543_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_2|NZ_CP050779.1_956770_958408_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_1|NZ_CP050779.1_958490_959789_+	PRK00077, eno, enolase; Provisional	NA|224aa|up_0|NZ_CP050779.1_959924_960596_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|266aa|down_0|NZ_CP050779.1_962056_962854_+	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|121aa|down_1|NZ_CP050779.1_962941_963304_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|down_2|NZ_CP050779.1_963727_965527_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|down_3|NZ_CP050779.1_965526_967239_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|down_4|NZ_CP050779.1_967314_968049_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|down_5|NZ_CP050779.1_968136_969090_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|900aa|down_6|NZ_CP050779.1_969470_972170_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|512aa|down_7|NZ_CP050779.1_972527_974063_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|201aa|down_8|NZ_CP050779.1_974079_974682_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas7|353aa|down_9|NZ_CP050779.1_974704_975763_+	pfam09344, Cas_CT1975, CT1975-like protein
GCF_012054045.1_ASM1205404v1	NZ_CP050779	Salmonella enterica subsp. enterica serovar Indiana strain SI85 chromosome, complete genome	3	978500-979565	2,3,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,DEDDh,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DinG	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	17,17,17	17	TypeI-E	cas3,PD-DExK,DEDDh,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DinG	NA,NA	NA|245aa|up_9|NZ_CP050779.1_967314_968049_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|up_8|NZ_CP050779.1_968136_969090_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|900aa|up_7|NZ_CP050779.1_969470_972170_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|512aa|up_6|NZ_CP050779.1_972527_974063_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|201aa|up_5|NZ_CP050779.1_974079_974682_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas7|353aa|up_4|NZ_CP050779.1_974704_975763_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|242aa|up_3|NZ_CP050779.1_975772_976498_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|235aa|up_2|NZ_CP050779.1_976497_977202_+	cd09664, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cas1|306aa|up_1|NZ_CP050779.1_977201_978119_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP050779.1_978121_978415_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|349aa|down_0|NZ_CP050779.1_979579_980626_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP050779.1_980876_981785_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|480aa|down_2|NZ_CP050779.1_981794_983234_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP050779.1_983220_983826_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP050779.1_983876_984200_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP050779.1_984390_984702_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP050779.1_984720_985431_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP050779.1_985430_985910_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP050779.1_985906_986956_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP050779.1_986936_987698_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_012054045.1_ASM1205404v1	NZ_CP050779	Salmonella enterica subsp. enterica serovar Indiana strain SI85 chromosome, complete genome	4	3580796-3580878	4	CRISPRCasFinder	no		cas3,PD-DExK,DEDDh,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DinG	Orphan	TGGACACTGGCTGGACATCGGCTGGACA	28	0	0	NA	NA	NA	1	1	Orphan	cas3,PD-DExK,DEDDh,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DinG	NA|146aa|up_6|NZ_CP050779.1_3576786_3577224_+,NA|67aa|up_4|NZ_CP050779.1_3577842_3578043_-,NA|66aa|up_2|NZ_CP050779.1_3578421_3578619_-,NA|49aa|down_0|NZ_CP050779.1_3581274_3581421_-,NA|78aa|down_2|NZ_CP050779.1_3582094_3582328_-,NA|114aa|down_4|NZ_CP050779.1_3583477_3583819_+,NA|92aa|down_5|NZ_CP050779.1_3584245_3584521_+,NA|90aa|down_6|NZ_CP050779.1_3584682_3584952_+,NA|53aa|down_7|NZ_CP050779.1_3584948_3585107_+	NA|204aa|up_9|NZ_CP050779.1_3575188_3575800_-	pfam05766, NinG, Bacteriophage Lambda NinG protein	NA|57aa|up_8|NZ_CP050779.1_3575792_3575963_-	PRK09689, PRK09689, prophage protein NinE; Provisional	NA|152aa|up_7|NZ_CP050779.1_3575962_3576418_-	PRK09741, PRK09741, hypothetical protein; Provisional	NA|146aa|up_6|NZ_CP050779.1_3576786_3577224_+	NA	NA|206aa|up_5|NZ_CP050779.1_3577225_3577843_-	pfam04448, DUF551, Protein of unknown function (DUF551)	NA|67aa|up_4|NZ_CP050779.1_3577842_3578043_-	NA	NA|130aa|up_3|NZ_CP050779.1_3578035_3578425_-	pfam13935, Ead_Ea22, Ead/Ea22-like protein	NA|66aa|up_2|NZ_CP050779.1_3578421_3578619_-	NA	NA|115aa|up_1|NZ_CP050779.1_3578615_3578960_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|478aa|up_0|NZ_CP050779.1_3578959_3580393_-	TIGR03600, phage_DnaB, phage replicative helicase, DnaB family, HK022 subfamily	NA|49aa|down_0|NZ_CP050779.1_3581274_3581421_-	NA	NA|189aa|down_1|NZ_CP050779.1_3581510_3582077_-	pfam06254, YdaT_toxin, Putative bacterial toxin ydaT	NA|78aa|down_2|NZ_CP050779.1_3582094_3582328_-	NA	NA|251aa|down_3|NZ_CP050779.1_3582369_3583122_+	COG1974, LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Transcription / Signal transduction mechanisms]	NA|114aa|down_4|NZ_CP050779.1_3583477_3583819_+	NA	NA|92aa|down_5|NZ_CP050779.1_3584245_3584521_+	NA	NA|90aa|down_6|NZ_CP050779.1_3584682_3584952_+	NA	NA|53aa|down_7|NZ_CP050779.1_3584948_3585107_+	NA	NA|70aa|down_8|NZ_CP050779.1_3585103_3585313_+	PRK11354, kil, FtsZ inhibitor protein; Reviewed	NA|324aa|down_9|NZ_CP050779.1_3585383_3586355_+	PTZ00121, PTZ00121, MAEBL; Provisional
