The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP050760	Salmonella enterica subsp. enterica serovar Indiana strain SI170 chromosome, complete genome	4813873	646399	710134	4813873	integrase,plate,head,capsid,holin,portal,tail,terminase,lysis	Salmonella_phage(46.67%)	84	690395:690409	712017:712031
WP_001748617.1|646399_647437_-|integrase	tyrosine-type recombinase/integrase	integrase	F1BUS9	Erwinia_phage	65.6	7.1e-124
WP_167811028.1|648442_649093_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001748620.1|649121_649700_-	phage repressor protein	NA	A0A218M4J1	Erwinia_phage	39.5	1.5e-27
WP_001247709.1|649819_650041_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000460877.1|650071_650575_+	hypothetical protein	NA	F1BUN6	Cronobacter_phage	72.5	3.5e-60
WP_000643375.1|650584_650812_+	DUF2724 domain-containing protein	NA	NA	NA	NA	NA
WP_024139063.1|650801_651227_+	hypothetical protein	NA	F1BUN5	Cronobacter_phage	49.6	2.9e-23
WP_001748623.1|651226_651628_+	hypothetical protein	NA	F1BUN2	Cronobacter_phage	66.9	1.9e-48
WP_071592686.1|651774_651951_+	DUF2732 family protein	NA	NA	NA	NA	NA
WP_000422609.1|651941_652538_+	3'-5' exonuclease	NA	A0A1S6L012	Salmonella_phage	72.3	3.8e-74
WP_000153512.1|652534_652864_+	DUF3850 domain-containing protein	NA	Q2P9X4	Enterobacteria_phage	45.2	3.0e-12
WP_001748626.1|652853_653714_+	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA	F1BUN1	Cronobacter_phage	82.4	4.9e-131
WP_064441649.1|653710_655732_+	replication endonuclease	NA	F1BUM9	Cronobacter_phage	74.6	7.9e-297
WP_001748628.1|655851_656058_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001552031.1|656031_656355_-	ogr/Delta-like zinc finger family protein	NA	F1BUM8	Cronobacter_phage	92.3	8.0e-50
WP_001650413.1|656351_657413_-|portal	phage portal protein	portal	F1BUM7	Cronobacter_phage	77.3	3.0e-162
WP_051129117.1|657409_659185_-|terminase	terminase	terminase	F1BUM5	Cronobacter_phage	83.3	7.5e-291
WP_000018798.1|659345_660146_+|capsid	phage capsid scaffolding protein	capsid	F1BUM4	Cronobacter_phage	54.8	3.2e-76
WP_000550496.1|660207_661230_+|capsid	phage major capsid protein, P2 family	capsid	F1BUM2	Cronobacter_phage	81.2	1.1e-158
WP_001218534.1|661233_661938_+|terminase	terminase	terminase	F1BUM0	Cronobacter_phage	67.4	1.0e-86
WP_000398492.1|661941_662136_+	hypothetical protein	NA	Q8W634	Enterobacteria_phage	58.6	3.3e-11
WP_000447490.1|662196_662685_+|head	head completion/stabilization protein	head	F1BUL8	Cronobacter_phage	81.3	4.3e-63
WP_000084220.1|662681_663188_+|tail	phage tail protein	tail	F1BUL7	Cronobacter_phage	69.8	5.2e-64
WP_000560081.1|663184_663892_+	hypothetical protein	NA	F1BUL6	Cronobacter_phage	76.5	3.4e-101
WP_000220205.1|663888_665016_+	DUF2586 domain-containing protein	NA	F1BUL5	Cronobacter_phage	83.7	3.3e-175
WP_000166743.1|665012_665468_+	DUF2597 family protein	NA	F1BUL4	Cronobacter_phage	72.2	1.5e-57
WP_001154425.1|665477_665771_+|holin	holin	holin	C7BGD7	Burkholderia_phage	46.2	1.3e-14
WP_000175560.1|665767_666109_+	M15 family metallopeptidase	NA	F1BUL3	Cronobacter_phage	91.1	2.2e-50
WP_000376374.1|666108_666441_+	hypothetical protein	NA	F1BUL2	Cronobacter_phage	70.0	2.0e-35
WP_000411340.1|666587_666845_+	hypothetical protein	NA	A5X9I7	Aeromonas_virus	63.4	3.6e-21
WP_167803027.1|667032_669000_+|tail	phage tail tape measure protein	tail	F1BUK9	Cronobacter_phage	69.8	4.0e-269
WP_001002797.1|668996_669326_+	DUF2590 family protein	NA	F1BUK8	Cronobacter_phage	72.4	3.8e-39
WP_054175278.1|669322_670507_+	hypothetical protein	NA	F1BUK6	Cronobacter_phage	78.4	1.1e-178
WP_001001824.1|670499_671087_+	hypothetical protein	NA	F1BUK5	Cronobacter_phage	82.1	1.1e-89
WP_054175279.1|671096_673109_+|tail	phage tail protein	tail	F1BUK3	Cronobacter_phage	81.2	2.1e-148
WP_001215677.1|673111_673642_+|tail	tail fiber assembly protein	tail	A0A1S6KZZ1	Salmonella_phage	32.4	4.4e-13
WP_054175280.1|673631_674357_+	hypothetical protein	NA	F1BUK1	Cronobacter_phage	56.4	6.6e-68
WP_000200789.1|674328_674874_+	hypothetical protein	NA	F1BUJ9	Cronobacter_phage	72.0	3.2e-59
WP_001747522.1|674876_676577_+	hypothetical protein	NA	F1BUJ7	Cronobacter_phage	81.3	1.7e-223
WP_001128281.1|677164_677326_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015386347.1|677706_678720_-|integrase	tyrosine-type recombinase/integrase	integrase	F1BUS9	Erwinia_phage	60.2	4.8e-117
WP_015386349.1|678946_679561_-	phage repressor protein CI	NA	A0A1S6KZZ7	Salmonella_phage	43.6	7.8e-38
WP_015386350.1|679662_679899_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015386351.1|679933_680443_+	phage regulatory CII family protein	NA	A0A1S6L008	Salmonella_phage	93.5	1.0e-83
WP_015386352.1|680450_680651_+	DUF2724 domain-containing protein	NA	E5G6L4	Salmonella_phage	90.9	8.7e-31
WP_000963477.1|680614_680956_+	DUF5347 domain-containing protein	NA	E5G6L5	Salmonella_phage	86.7	2.6e-51
WP_001744223.1|681023_681257_+	DUF2732 domain-containing protein	NA	E5G6L6	Salmonella_phage	80.5	5.4e-24
WP_039505139.1|681256_681484_+	TraR/DksA family transcriptional regulator	NA	A0A1S6L007	Salmonella_phage	92.0	1.9e-34
WP_079792110.1|681480_682332_+	DNA adenine methylase	NA	E5G6L8	Salmonella_phage	71.9	8.1e-118
WP_039505137.1|682328_684722_+	replication endonuclease	NA	A0A1S6L028	Salmonella_phage	90.3	0.0e+00
WP_001154443.1|684883_685072_+	hypothetical protein	NA	A0A1S6L006	Salmonella_phage	98.4	6.1e-26
WP_001217561.1|685083_685317_+	DinI family protein	NA	A0A1S6L014	Salmonella_phage	92.2	2.2e-33
WP_053216779.1|685941_686436_+	hypothetical protein	NA	K7PKJ4	Enterobacteria_phage	41.3	1.2e-28
WP_053216775.1|686515_686695_+	hypothetical protein	NA	NA	NA	NA	NA
WP_053216774.1|686748_687798_-|portal	phage portal protein	portal	A0A1S6KZW5	Salmonella_phage	80.6	7.1e-156
WP_017382378.1|687797_689561_-|terminase	terminase ATPase subunit family protein	terminase	A0A1S6KZW3	Salmonella_phage	87.7	3.2e-312
WP_053216773.1|689710_690538_+|capsid	GPO family capsid scaffolding protein	capsid	A0A1S6KZW9	Salmonella_phage	56.0	1.3e-72
690395:690409	attL	CTGAGCAATATGCAA	NA	NA	NA	NA
WP_053216772.1|690553_691702_+|capsid	phage major capsid protein, P2 family	capsid	E5G6M6	Salmonella_phage	69.1	1.6e-132
WP_006777754.1|691705_692359_+|terminase	Small terminase subunit	terminase	E5G6M7	Salmonella_phage	56.1	5.2e-56
WP_047746799.1|692457_692925_+|head	head completion/stabilization protein	head	A0A1S6KZW8	Salmonella_phage	58.7	1.3e-48
WP_000868184.1|692924_693128_+|tail	tail protein X	tail	E5G6M9	Salmonella_phage	100.0	3.8e-34
WP_000171565.1|693131_693347_+	hypothetical protein	NA	E5G6N0	Salmonella_phage	100.0	5.9e-33
WP_032266129.1|693327_693837_+	lysozyme	NA	E5G6N1	Salmonella_phage	79.9	1.7e-75
WP_032266128.1|693841_694219_+	hypothetical protein	NA	A0A1S6KZZ2	Salmonella_phage	95.2	2.4e-58
WP_164848160.1|694215_694644_+|lysis	LysB family phage lysis regulatory protein	lysis	A0A1S6KZX8	Salmonella_phage	97.9	2.5e-67
WP_001039961.1|694739_695171_+|tail	phage tail protein	tail	A0A1S6KZY0	Salmonella_phage	99.3	1.1e-75
WP_039505111.1|695163_695610_+	phage virion morphogenesis protein	NA	A0A1S6L001	Salmonella_phage	90.4	1.7e-66
WP_023223445.1|695678_696257_+|plate	phage baseplate assembly protein V	plate	E5G6N6	Salmonella_phage	97.9	2.6e-107
WP_023223444.1|696253_696613_+|plate	phage baseplate assembly protein	plate	A0A1S6KZZ4	Salmonella_phage	92.4	1.4e-55
WP_023223443.1|696599_697508_+|plate	baseplate assembly protein	plate	E5G6N8	Salmonella_phage	92.1	8.3e-145
WP_039505106.1|697500_698028_+|tail	phage tail protein I	tail	Q37841	Escherichia_phage	84.1	8.1e-84
WP_053216770.1|698035_699937_+	hypothetical protein	NA	Q37842	Escherichia_phage	76.8	5.1e-96
WP_023223490.1|699962_700373_+|tail	phage tail fiber assembly protein	tail	A0A291LAV4	Bordetella_phage	28.6	2.6e-05
WP_039505102.1|700506_701679_+|tail	phage tail sheath protein	tail	A0A1S6KZY7	Salmonella_phage	95.1	1.1e-213
WP_039505100.1|701688_702204_+|tail	phage major tail tube protein	tail	E5G6P8	Salmonella_phage	98.2	6.7e-91
WP_032233623.1|702258_702561_+|tail	phage tail assembly protein	tail	E5G6P9	Salmonella_phage	94.9	1.5e-42
WP_000763315.1|702575_702695_+|tail	GpE family phage tail protein	tail	E5G6Q0	Salmonella_phage	94.9	1.2e-14
WP_164848159.1|702921_705465_+|tail	phage tail tape measure protein	tail	E5FFG5	Burkholderia_phage	45.0	1.3e-107
WP_058800071.1|705461_705947_+|tail	phage tail protein	tail	E5G6Q2	Salmonella_phage	93.2	1.5e-71
WP_058800072.1|705943_707044_+	phage late control D family protein	NA	A0A1S6KZZ5	Salmonella_phage	92.6	3.4e-185
WP_039505088.1|707112_707331_+	levansucrase regulator	NA	Q53ZE7	Salmonella_virus	80.6	5.2e-29
WP_039505087.1|707346_707721_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000290293.1|708091_709408_+|integrase	site-specific integrase	integrase	A0A248SL35	Klebsiella_phage	28.4	5.0e-34
WP_000268404.1|709537_710134_+	hypothetical protein	NA	A0A1B0VBK8	Salmonella_phage	87.4	9.4e-97
712017:712031	attR	TTGCATATTGCTCAG	NA	NA	NA	NA
>prophage 2
NZ_CP050760	Salmonella enterica subsp. enterica serovar Indiana strain SI170 chromosome, complete genome	4813873	1207613	1319796	4813873	integrase,head,capsid,holin,portal,tail,transposase,terminase,tRNA	Cronobacter_phage(50.0%)	92	1202870:1202888	1287998:1288016
1202870:1202888	attL	TGGCAATAACGTATTGTTT	NA	NA	NA	NA
WP_089541817.1|1207613_1208842_-|transposase	IS3 family transposase	transposase	Q9ZXG3	Shigella_phage	95.7	2.7e-170
WP_049823386.1|1209353_1211534_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_023226808.1|1211575_1212511_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_023226809.1|1212542_1213787_-	esterase family protein	NA	NA	NA	NA	NA
WP_023226810.1|1213896_1217550_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	29.2	7.9e-45
WP_023226811.1|1217630_1218746_-	salmochelin biosynthesis C-glycosyltransferase IroB	NA	NA	NA	NA	NA
WP_000190920.1|1219708_1220281_-	flagellar phase variation DNA invertase Hin	NA	A0A0A7NPV4	Enterobacteria_phage	72.1	2.0e-67
WP_000079792.1|1220372_1221893_+	flagellin FliC	NA	NA	NA	NA	NA
WP_023226812.1|1221960_1222500_+	phase 1 flagellin gene repressor FljA	NA	NA	NA	NA	NA
WP_023226815.1|1223319_1225197_+	KAP family P-loop domain-containing protein	NA	NA	NA	NA	NA
WP_023193100.1|1225196_1226006_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023226816.1|1226002_1227268_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023193101.1|1227264_1228023_+	TatD-related deoxyribonuclease	NA	NA	NA	NA	NA
WP_020839148.1|1228270_1229185_+	hypothetical protein	NA	NA	NA	NA	NA
WP_020839149.1|1229342_1229573_-	hypothetical protein	NA	NA	NA	NA	NA
WP_072101449.1|1230196_1231360_-	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_023226827.1|1231367_1233548_-	type I secretion system permease/ATPase	NA	F2Y302	Organic_Lake_phycodnavirus	34.5	7.6e-19
WP_023226828.1|1233544_1234954_-	TolC family outer membrane protein	NA	NA	NA	NA	NA
WP_023226829.1|1235018_1246493_-	biofilm-associated protein BapA	NA	NA	NA	NA	NA
WP_001518569.1|1247107_1247590_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	47.4	5.2e-29
WP_000242603.1|1247739_1248216_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_001112990.1|1248205_1248496_+	RnfH family protein	NA	NA	NA	NA	NA
WP_001203445.1|1248661_1249000_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA	NA
WP_000880965.1|1249148_1250810_-	DNA repair protein RecN	NA	NA	NA	NA	NA
WP_023227264.1|1250895_1251774_-	NAD(+) kinase	NA	NA	NA	NA	NA
WP_001518875.1|1251897_1252488_+	nucleotide exchange factor GrpE	NA	NA	NA	NA	NA
WP_001287924.1|1252522_1253128_-	hypothetical protein	NA	NA	NA	NA	NA
WP_127172650.1|1253248_1254535_-	HlyC/CorC family transporter	NA	NA	NA	NA	NA
WP_001537507.1|1254554_1255346_-	inner membrane protein YpjD	NA	NA	NA	NA	NA
WP_023227265.1|1255511_1256873_+	signal recognition particle protein	NA	NA	NA	NA	NA
WP_000256453.1|1257186_1257435_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_000043266.1|1257453_1258002_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_000469807.1|1258046_1258814_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_000065257.1|1258854_1259202_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_001030985.1|1259357_1260578_-	diguanylate cyclase DgcN	NA	A0A2K8I9Y5	Pseudomonas_phage	36.2	5.8e-08
WP_001212379.1|1260570_1261089_-	YfiR family protein	NA	NA	NA	NA	NA
WP_001168062.1|1261528_1262599_+	3-deoxy-7-phosphoheptulonate synthase AroF	NA	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	51.8	2.4e-90
WP_023227266.1|1262608_1263730_+	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA	NA
WP_000210991.1|1263787_1264696_+	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA	NA
WP_000200077.1|1264656_1265817_-	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA	NA
WP_010989056.1|1265916_1265964_-	hypothetical protein	NA	NA	NA	NA	NA
WP_054175282.1|1266127_1267120_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A0F7LBR0	Escherichia_phage	58.5	6.1e-109
WP_000085723.1|1267186_1267486_-	helix-turn-helix domain-containing protein	NA	Q1JS21	Enterobacteria_phage	53.2	3.8e-22
WP_002954289.1|1267594_1267933_+	phage regulatory protein	NA	NA	NA	NA	NA
WP_000645096.1|1267958_1268291_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000681786.1|1268300_1268870_+	3'-5' exoribonuclease	NA	K7PLW7	Enterobacteria_phage	46.8	1.2e-43
WP_000922120.1|1268872_1269091_+	hypothetical protein	NA	NA	NA	NA	NA
WP_054175272.1|1269129_1271787_+	toprim domain protein	NA	A0A077K8T2	Ralstonia_phage	47.6	7.1e-245
WP_000088096.1|1271814_1272138_-	ogr/Delta-like zinc finger family protein	NA	F1BUM8	Cronobacter_phage	73.1	1.3e-36
WP_054175273.1|1272137_1273157_-|portal	phage portal protein	portal	F1BUM7	Cronobacter_phage	67.8	2.5e-134
WP_054175274.1|1273153_1274938_-|terminase	terminase	terminase	F1BUM5	Cronobacter_phage	69.5	1.9e-246
WP_023375469.1|1275148_1275985_+|capsid	capsid scaffolding protein	capsid	F1BUM4	Cronobacter_phage	52.3	3.6e-46
WP_001176503.1|1276019_1277048_+|capsid	phage major capsid protein, P2 family	capsid	F1BUM2	Cronobacter_phage	71.6	3.7e-133
WP_001177276.1|1277059_1277758_+|terminase	terminase	terminase	F1BUM0	Cronobacter_phage	52.6	3.6e-63
WP_031602415.1|1277817_1278309_+|head	head completion/stabilization protein	head	F1BUL8	Cronobacter_phage	64.7	1.3e-48
WP_000080871.1|1278305_1278788_+|tail	phage tail protein	tail	F1BUL7	Cronobacter_phage	48.7	2.3e-37
WP_001534848.1|1278784_1279489_+	hypothetical protein	NA	F1BUL6	Cronobacter_phage	59.9	1.8e-70
WP_001748058.1|1279485_1280613_+	DUF2586 domain-containing protein	NA	F1BUL5	Cronobacter_phage	83.5	2.1e-174
WP_054175275.1|1280609_1281065_+	DUF2597 family protein	NA	F1BUL4	Cronobacter_phage	70.9	2.3e-58
WP_001154426.1|1281077_1281374_+|holin	holin	holin	C7BGD7	Burkholderia_phage	48.2	2.4e-16
WP_054175276.1|1281370_1281712_+	M15 family metallopeptidase	NA	F1BUL3	Cronobacter_phage	93.1	7.6e-51
WP_054175277.1|1281711_1282044_+	hypothetical protein	NA	F1BUL2	Cronobacter_phage	69.1	9.7e-35
WP_000411500.1|1282190_1282448_+	hypothetical protein	NA	A5X9I7	Aeromonas_virus	61.0	2.3e-20
WP_000811098.1|1282635_1284603_+|tail	phage tail tape measure protein	tail	F1BUK9	Cronobacter_phage	70.7	4.3e-271
WP_001002797.1|1284599_1284929_+	DUF2590 family protein	NA	F1BUK8	Cronobacter_phage	72.4	3.8e-39
WP_054175278.1|1284925_1286110_+	hypothetical protein	NA	F1BUK6	Cronobacter_phage	78.4	1.1e-178
WP_001001824.1|1286102_1286690_+	hypothetical protein	NA	F1BUK5	Cronobacter_phage	82.1	1.1e-89
WP_054175279.1|1286699_1288712_+|tail	phage tail protein	tail	F1BUK3	Cronobacter_phage	81.2	2.1e-148
1287998:1288016	attR	TGGCAATAACGTATTGTTT	NA	NA	NA	NA
WP_001215677.1|1288714_1289245_+|tail	tail fiber assembly protein	tail	A0A1S6KZZ1	Salmonella_phage	32.4	4.4e-13
WP_054175280.1|1289234_1289960_+	hypothetical protein	NA	F1BUK1	Cronobacter_phage	56.4	6.6e-68
WP_000200789.1|1289931_1290477_+	hypothetical protein	NA	F1BUJ9	Cronobacter_phage	72.0	3.2e-59
WP_001747522.1|1290479_1292180_+	hypothetical protein	NA	F1BUJ7	Cronobacter_phage	81.3	1.7e-223
WP_001748131.1|1293213_1293600_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000178449.1|1293757_1294096_-	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA	NA
WP_000197660.1|1294367_1295105_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_000079130.1|1295236_1296217_+	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA	NA
WP_000992640.1|1296213_1296945_+	polyphenol oxidase	NA	NA	NA	NA	NA
WP_001235094.1|1297074_1299648_+	ATP-dependent chaperone ClpB	NA	H6X3M6	Enterobacteria_phage	35.6	9.0e-128
WP_023227274.1|1305596_1306052_+	DUF4385 domain-containing protein	NA	E3SMI8	Prochlorococcus_phage	50.0	3.9e-34
WP_000807818.1|1306155_1307457_+	MFS transporter	NA	Q6JIH2	Burkholderia_virus	30.4	1.2e-43
WP_001264473.1|1307453_1307777_-	YfiM family lipoprotein	NA	NA	NA	NA	NA
WP_000949286.1|1307821_1309177_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_000082642.1|1309291_1311952_-	protein lysine acetyltransferase	NA	NA	NA	NA	NA
WP_023227275.1|1312005_1312686_-	DTW domain-containing protein	NA	NA	NA	NA	NA
WP_023227276.1|1312758_1313178_-	thioredoxin TrxC	NA	A0A0K2FIM3	Achromobacter_phage	40.6	1.2e-16
WP_000997368.1|1313381_1314419_+|tRNA	tRNA/rRNA methyltransferase	tRNA	NA	NA	NA	NA
WP_000179978.1|1314534_1315224_-	uracil-DNA glycosylase	NA	A0A172DS90	Canid_alphaherpesvirus	49.5	4.6e-55
WP_000627811.1|1315542_1315926_+	autonomous glycyl radical cofactor GrcA	NA	Q7Y524	Enterobacteria_phage	74.0	6.1e-33
WP_023227277.1|1315987_1316575_-	cysteine/O-acetylserine transporter	NA	NA	NA	NA	NA
WP_023227278.1|1316677_1317577_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023227279.1|1317594_1318929_-	ATP-dependent RNA helicase SrmB	NA	A0A1B1IS59	uncultured_Mediterranean_phage	29.7	1.6e-43
WP_000083338.1|1319058_1319796_+|tRNA	tRNA(1)(Val) (adenine(37)-N(6))-methyltransferase TrmN	tRNA	NA	NA	NA	NA
>prophage 3
NZ_CP050760	Salmonella enterica subsp. enterica serovar Indiana strain SI170 chromosome, complete genome	4813873	1551086	1557947	4813873	transposase	Salmonella_virus(42.86%)	7	NA	NA
WP_106417237.1|1551086_1551233_+	hypothetical protein	NA	A0A1R3Y5S2	Salmonella_virus	73.9	1.1e-14
WP_109166850.1|1551248_1551392_+	hypothetical protein	NA	A0A1R3Y5S2	Salmonella_virus	85.4	2.6e-13
WP_023226601.1|1552381_1554304_-	acyltransferase	NA	A0A1R3Y5Q6	Salmonella_virus	77.8	3.9e-301
WP_000703601.1|1554310_1554577_-	glycosyltransferase	NA	A8CG95	Salmonella_phage	79.5	3.3e-25
WP_023226602.1|1554545_1554935_-	GtrA family protein	NA	A0A192Y6N5	Salmonella_phage	97.5	1.3e-59
WP_001067855.1|1555046_1555751_+|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
WP_001590337.1|1557005_1557947_-	transporter protein	NA	E7DYY8	Enterobacteria_phage	87.8	4.1e-147
>prophage 4
NZ_CP050760	Salmonella enterica subsp. enterica serovar Indiana strain SI170 chromosome, complete genome	4813873	1789479	1798650	4813873	tRNA	Enterobacteria_phage(66.67%)	10	NA	NA
WP_000569166.1|1789479_1790427_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.2	1.7e-23
WP_000824854.1|1790410_1791142_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_001261696.1|1791122_1791230_-	protein YohO	NA	NA	NA	NA	NA
WP_001240418.1|1791289_1792021_-	HTH-type transcriptional regulator MlrA	NA	Q9EYF2	Enterobacteria_phage	87.9	4.5e-101
WP_000272850.1|1792243_1793929_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	91.3	4.8e-279
WP_000598637.1|1793925_1794645_+	two-component system response regulator BtsR	NA	NA	NA	NA	NA
WP_000950415.1|1794691_1795159_+	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	89.7	6.7e-74
WP_023226723.1|1795215_1795746_-	YehR family lipoprotein	NA	NA	NA	NA	NA
WP_000703137.1|1795917_1796376_-	YehR family lipoprotein	NA	Q9EYF5	Enterobacteria_phage	72.5	8.4e-53
WP_023226722.1|1796616_1798650_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SDF2	Indivirus	26.9	6.1e-55
>prophage 5
NZ_CP050760	Salmonella enterica subsp. enterica serovar Indiana strain SI170 chromosome, complete genome	4813873	1912526	1923033	4813873		Enterobacteria_phage(37.5%)	10	NA	NA
WP_023226691.1|1912526_1913930_+	colanic acid biosynthesis protein WcaM	NA	A0A291LBB9	Klebsiella_phage	26.5	3.1e-21
WP_000981469.1|1914107_1915001_+	GalU regulator GalF	NA	A0A127AW70	Bacillus_phage	42.2	4.8e-44
WP_000697846.1|1915377_1916463_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	53.9	1.6e-102
WP_023226690.1|1916462_1917362_+	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	36.3	1.8e-30
WP_023226689.1|1917409_1918288_+	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	65.5	2.1e-108
WP_000973709.1|1918288_1918840_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	58.0	1.3e-52
WP_023200991.1|1918845_1919820_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_000648783.1|1919835_1920609_+	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_000565903.1|1920613_1921693_+	CDP-glucose 4,6-dehydratase	NA	A0A222YY99	Synechococcus_phage	24.5	1.7e-16
WP_000126349.1|1921719_1923033_+	lipopolysaccharide biosynthesis protein RfbH	NA	H8ZJ36	Ostreococcus_tauri_virus	35.1	7.0e-52
>prophage 6
NZ_CP050760	Salmonella enterica subsp. enterica serovar Indiana strain SI170 chromosome, complete genome	4813873	2033152	2044442	4813873	integrase	Burkholderia_phage(25.0%)	12	2027406:2027421	2041753:2041768
2027406:2027421	attL	GAACAGGTGGATAAGG	NA	NA	NA	NA
WP_023226634.1|2033152_2034334_+	AAA family ATPase	NA	C7BGE8	Burkholderia_phage	26.9	2.4e-35
WP_023226633.1|2034334_2035081_+	HNH endonuclease	NA	NA	NA	NA	NA
WP_023226632.1|2035182_2036439_-|integrase	site-specific integrase	integrase	A0A077KET4	Ralstonia_phage	41.3	3.4e-80
WP_023226631.1|2036919_2037081_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000394197.1|2037207_2037627_+	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A1W6JNS2	Morganella_phage	60.5	8.5e-36
WP_023194544.1|2037629_2038898_+	Y-family DNA polymerase	NA	I6RSM4	Salmonella_phage	92.7	3.8e-228
WP_000208509.1|2039352_2039565_+	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	70.0	3.9e-21
WP_024131109.1|2039575_2039764_+	hypothetical protein	NA	NA	NA	NA	NA
WP_024154957.1|2040022_2041201_-	porin OmpS1	NA	Q1MVN1	Enterobacteria_phage	57.2	8.6e-110
WP_023227458.1|2041851_2042163_+	hypothetical protein	NA	NA	NA	NA	NA
2041753:2041768	attR	GAACAGGTGGATAAGG	NA	NA	NA	NA
WP_023227459.1|2042242_2042938_+	phosphohydrolase	NA	A0A1D6Y7U0	Golden_Marseillevirus	27.1	1.6e-07
WP_001157305.1|2043011_2044442_+	DNA cytosine methyltransferase	NA	E5E3X6	Burkholderia_phage	57.4	1.0e-104
>prophage 7
NZ_CP050760	Salmonella enterica subsp. enterica serovar Indiana strain SI170 chromosome, complete genome	4813873	2225191	2264344	4813873	protease,integrase,transposase	Shigella_phage(37.5%)	30	2241628:2241644	2256212:2256228
WP_023227614.1|2225191_2225788_-|protease	hydrogenase 1 maturation protease	protease	NA	NA	NA	NA
WP_000147031.1|2225784_2226516_-	Ni/Fe-hydrogenase b-type cytochrome subunit	NA	NA	NA	NA	NA
WP_000070982.1|2226534_2228328_-	Ni/Fe-hydrogenase large subunit	NA	NA	NA	NA	NA
WP_023227615.1|2228324_2229443_-	hydrogenase 1 small subunit	NA	NA	NA	NA	NA
WP_023227616.1|2229936_2231202_+	DUF4427 domain-containing protein	NA	NA	NA	NA	NA
WP_089541817.1|2233764_2234992_+|transposase	IS3 family transposase	transposase	Q9ZXG3	Shigella_phage	95.7	2.7e-170
WP_000136607.1|2236430_2238941_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001442952.1|2238944_2241509_+	hypothetical protein	NA	NA	NA	NA	NA
2241628:2241644	attL	TCAAACTGTTTTATTGA	NA	NA	NA	NA
WP_000716184.1|2241815_2242130_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001232453.1|2242141_2242660_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000108266.1|2242713_2243241_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001442951.1|2243253_2243523_-	transcriptional regulator	NA	M1PVU4	Vibrio_phage	61.9	4.1e-15
WP_000093666.1|2243643_2244024_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000174655.1|2244181_2244724_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000142750.1|2244746_2245235_+	DNA repair protein RadC	NA	NA	NA	NA	NA
WP_050516501.1|2245362_2245758_+	DUF2787 family protein	NA	NA	NA	NA	NA
WP_019841938.1|2245818_2246178_+	antitoxin	NA	NA	NA	NA	NA
WP_000744655.1|2246287_2246905_+	DUF905 family protein	NA	NA	NA	NA	NA
WP_050516502.1|2247017_2247929_+|integrase	site-specific integrase	integrase	A0A1B1P7C7	Bacillus_phage	31.3	6.0e-10
WP_000870315.1|2248142_2248589_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000999224.1|2248853_2249048_+	AlpA family transcriptional regulator	NA	NA	NA	NA	NA
WP_000468111.1|2249049_2249922_+	hypothetical protein	NA	NA	NA	NA	NA
WP_088895425.1|2250131_2251360_-|transposase	IS3-like element IS2 family transposase	transposase	Q9ZXG3	Shigella_phage	99.3	1.3e-177
WP_167811033.1|2251616_2255516_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001087212.1|2255837_2257523_-	hypothetical protein	NA	NA	NA	NA	NA
2256212:2256228	attR	TCAATAAAACAGTTTGA	NA	NA	NA	NA
WP_000151475.1|2257532_2258198_-	DUF4433 domain-containing protein	NA	NA	NA	NA	NA
WP_000699006.1|2258198_2259596_-	hypothetical protein	NA	A0A2H4UW05	Bodo_saltans_virus	24.8	6.6e-08
WP_080229793.1|2261513_2262293_+	AAA family ATPase	NA	A0A2L1IVB6	Escherichia_phage	98.8	1.1e-137
WP_069067343.1|2262934_2263273_+|transposase	IS3 family transposase	transposase	U5P4I9	Shigella_phage	92.5	2.4e-33
WP_001443045.1|2263192_2264344_-|transposase	IS30-like element IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	35.0	4.1e-40
>prophage 8
NZ_CP050760	Salmonella enterica subsp. enterica serovar Indiana strain SI170 chromosome, complete genome	4813873	2358676	2364488	4813873		Escherichia_phage(33.33%)	8	NA	NA
WP_000230462.1|2358676_2359483_-	peptide ABC transporter ATP-binding protein SapF	NA	G3M9Y6	Bacillus_virus	27.4	4.6e-14
WP_001128869.1|2359484_2360477_-	peptide ABC transporter ATP-binding protein SapD	NA	NA	NA	NA	NA
WP_001146150.1|2360476_2361367_-	peptide ABC transporter permease SapC	NA	NA	NA	NA	NA
WP_023227163.1|2361490_2361892_+	DUF4102 domain-containing protein	NA	K7PGY1	Enterobacteria_phage	58.4	3.8e-33
WP_051129228.1|2362191_2363079_-	hypothetical protein	NA	A0A0P0ZCT1	Stx2-converting_phage	38.5	5.6e-37
WP_023227161.1|2363385_2363655_+	hypothetical protein	NA	S4TSR3	Salmonella_phage	92.1	1.8e-26
WP_071525147.1|2364009_2364150_+	pertussis toxin subunit	NA	A0A0U2KD26	Escherichia_phage	74.3	1.1e-08
WP_071601154.1|2364188_2364488_+	pertussis toxin subunit	NA	A0A0U2KD26	Escherichia_phage	57.1	2.2e-14
>prophage 9
NZ_CP050760	Salmonella enterica subsp. enterica serovar Indiana strain SI170 chromosome, complete genome	4813873	2831456	2838919	4813873	transposase	Escherichia_phage(42.86%)	8	NA	NA
WP_000497451.1|2831456_2831696_+	virulence protein MsgA	NA	K7P6H1	Enterobacteria_phage	88.6	8.5e-33
WP_023226907.1|2832569_2833379_+	cytolethal distending toxin S-CDT	NA	A5LH53	Enterobacteria_phage	50.0	9.2e-63
WP_001277616.1|2833451_2833829_+	DUF1353 domain-containing protein	NA	I1TQ41	Pseudomonas_phage	38.4	2.2e-14
WP_023226906.1|2833976_2834519_-	glycoside hydrolase family 108 protein	NA	A0A0U2S643	Escherichia_phage	66.5	1.1e-70
WP_023218771.1|2834710_2835439_-	pertussis-like toxin subunit ArtA	NA	A0A0U2KD26	Escherichia_phage	53.3	1.4e-62
WP_023226904.1|2835455_2835869_-	subtilase cytotoxin subunit B	NA	A0A0U2KD34	Escherichia_phage	38.6	1.4e-19
WP_023226903.1|2836819_2837944_-	type III secretion system effector SopF	NA	NA	NA	NA	NA
WP_000502119.1|2838460_2838919_-|transposase	IS200/IS605-like element IS200F family transposase	transposase	I4AZI8	Saccharomonospora_phage	31.5	1.0e-13
>prophage 1
NZ_CP050761	Salmonella enterica subsp. enterica serovar Indiana strain SI170 plasmid pSI170-1, complete sequence	214820	125112	149931	214820	transposase	Escherichia_phage(45.45%)	22	NA	NA
WP_001067855.1|125112_125817_-|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
WP_001199192.1|125930_126707_+	aminoglycoside N-acetyltransferase AAC(3)-IVa	NA	NA	NA	NA	NA
WP_000742814.1|126935_127961_+	aminoglycoside O-phosphotransferase APH(4)-Ia	NA	NA	NA	NA	NA
WP_000602738.1|128382_129135_-|transposase	IS6 family transposase	transposase	A0A077SL39	Escherichia_phage	44.7	2.4e-41
WP_167811043.1|130716_131991_-|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
WP_001053381.1|132065_132839_-	AAA family ATPase	NA	A0A2L1IVB6	Escherichia_phage	55.4	5.5e-73
WP_021545039.1|132838_133864_-|transposase	IS21-like element ISEc57 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	44.1	6.6e-74
WP_001255015.1|134225_134531_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_058100717.1|134558_135773_-	chloramphenicol/florfenicol efflux MFS transporter FloR	NA	S4TR35	Salmonella_phage	28.7	5.5e-19
WP_001447541.1|135989_136874_-	DUF3363 domain-containing protein	NA	NA	NA	NA	NA
WP_167811044.1|137868_138393_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000743213.1|138603_138828_-	hypothetical protein	NA	NA	NA	NA	NA
WP_167811045.1|139886_140306_+	recombinase family protein	NA	Q1MVP4	Enterobacteria_phage	100.0	2.9e-60
WP_049824851.1|141065_141536_+	TetR family transcriptional regulator	NA	A0A0R6PIB6	Moraxella_phage	32.7	5.3e-10
WP_014839978.1|141555_142344_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_014839979.1|142343_142862_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014839980.1|142866_143283_-	fosfomycin resistance glutathione transferase FosA3	NA	Q2LI91	Bacillus_phage	35.6	2.0e-08
WP_013362812.1|146120_147089_-|transposase	IS5-like element IS903B family transposase	transposase	A0A1B0VFY5	Salmonella_phage	100.0	1.6e-186
WP_013188475.1|147123_147999_-	class A extended-spectrum beta-lactamase CTX-M-65	NA	A0A1B0VBP7	Salmonella_phage	98.9	6.8e-152
WP_014342101.1|147978_148101_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000434930.1|148503_149130_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001067855.1|149226_149931_-|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
