assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_012051385.1_ASM1205138v1	NZ_CP050731	Salmonella enterica subsp. enterica serovar Typhimurium strain ST101 chromosome, complete genome	1	598302-598402	1	CRISPRCasFinder	no		cas3,PD-DExK,WYL,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,cas14j,DEDDh,DinG,RT	Orphan	GCTTCAGTGGCGAACGTCGTGAA	23	0	0	NA	NA	NA	1	1	Orphan	cas3,PD-DExK,WYL,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,cas14j,DEDDh,DinG,RT	NA,NA|177aa|down_1|NZ_CP050731.1_599920_600451_-	NA|448aa|up_9|NZ_CP050731.1_584380_585724_-	PRK05370, PRK05370, argininosuccinate synthase; Validated	NA|151aa|up_8|NZ_CP050731.1_586351_586804_+	PRK00092, PRK00092, ribosome maturation protein RimP; Reviewed	NA|501aa|up_7|NZ_CP050731.1_586831_588334_+	PRK09202, nusA, transcription elongation factor NusA; Validated	NA|893aa|up_6|NZ_CP050731.1_588358_591037_+	PRK05306, infB, translation initiation factor IF-2; Validated	NA|134aa|up_5|NZ_CP050731.1_591257_591659_+	PRK00521, rbfA, 30S ribosome-binding factor RbfA	NA|315aa|up_4|NZ_CP050731.1_591658_592603_+	PRK05033, truB, tRNA pseudouridine synthase B; Provisional	NA|90aa|up_3|NZ_CP050731.1_592753_593023_+	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed	NA|712aa|up_2|NZ_CP050731.1_593264_595400_+	PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase; Provisional	NA|295aa|up_1|NZ_CP050731.1_595509_596394_+	PRK11189, PRK11189, lipoprotein NlpI; Provisional	NA|27aa|up_0|NZ_CP050731.1_596499_596580_+	NF033440, small_YrbN, protein YrbN	NA|415aa|down_0|NZ_CP050731.1_598615_599860_+	PRK10483, PRK10483, tryptophan permease; Provisional	NA|177aa|down_1|NZ_CP050731.1_599920_600451_-	NA	NA|240aa|down_2|NZ_CP050731.1_600609_601329_+	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown]	NA|336aa|down_3|NZ_CP050731.1_601306_602314_-	PRK10508, PRK10508, luciferase-like monooxygenase	NA|299aa|down_4|NZ_CP050731.1_602491_603388_-	PRK15447, PRK15447, putative protease; Provisional	NA|332aa|down_5|NZ_CP050731.1_603378_604374_-	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|175aa|down_6|NZ_CP050731.1_604590_605115_+	COG3154, COG3154, Putative lipid carrier protein [Lipid metabolism]	NA|168aa|down_7|NZ_CP050731.1_605108_605612_+	COG3153, COG3153, Predicted acetyltransferase [General function prediction only]	NA|106aa|down_8|NZ_CP050731.1_605598_605916_-	PRK00329, PRK00329, GIY-YIG nuclease superfamily protein; Validated	NA|148aa|down_9|NZ_CP050731.1_605953_606397_+	PRK03467, PRK03467, hypothetical protein; Provisional
GCF_012051385.1_ASM1205138v1	NZ_CP050731	Salmonella enterica subsp. enterica serovar Typhimurium strain ST101 chromosome, complete genome	2	980733-982226	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,WYL,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,cas14j,DEDDh,DinG,RT	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	23,24,24	24	TypeI-E	cas3,PD-DExK,WYL,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,cas14j,DEDDh,DinG,RT	NA,NA	NA|381aa|up_9|NZ_CP050731.1_966531_967674_+	COG1929, COG1929, Glycerate kinase [Carbohydrate transport and metabolism]	NA|919aa|up_8|NZ_CP050731.1_967717_970474_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|432aa|up_7|NZ_CP050731.1_970531_971827_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_6|NZ_CP050731.1_971878_974113_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|119aa|up_5|NZ_CP050731.1_974196_974553_+	COG3609, COG3609, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription]	NA|99aa|up_4|NZ_CP050731.1_974518_974815_+	COG3668, ParE, Plasmid stabilization system protein [General function prediction only]	NA|267aa|up_3|NZ_CP050731.1_975582_976383_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_2|NZ_CP050731.1_976610_978248_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_1|NZ_CP050731.1_978330_979629_+	PRK00077, eno, enolase; Provisional	NA|224aa|up_0|NZ_CP050731.1_979764_980436_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|266aa|down_0|NZ_CP050731.1_982323_983121_+	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|121aa|down_1|NZ_CP050731.1_983208_983571_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|down_2|NZ_CP050731.1_983994_985794_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|down_3|NZ_CP050731.1_985793_987506_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|down_4|NZ_CP050731.1_987581_988316_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|down_5|NZ_CP050731.1_988403_989357_-	PRK15379, PRK15379, type III secretion system effector SopD	cse2gr11|187aa|down_6|NZ_CP050731.1_994028_994589_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|353aa|down_7|NZ_CP050731.1_994602_995661_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|down_8|NZ_CP050731.1_995671_996418_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|down_9|NZ_CP050731.1_996399_997050_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI
GCF_012051385.1_ASM1205138v1	NZ_CP050731	Salmonella enterica subsp. enterica serovar Typhimurium strain ST101 chromosome, complete genome	3	998357-999602	2,3,2	PILER-CR,CRISPRCasFinder,CRT	no	cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,WYL,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,cas14j,DEDDh,DinG,RT	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACC,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	28,29,29	2	2	998385-998417|998386-998417	NZ_CP050731.1_1872519-1872487|NZ_CP050731.1_1872518-1872487	I-E:I-E:I-E	19,20,20	20	TypeI-E	cas3,PD-DExK,WYL,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,cas14j,DEDDh,DinG,RT	NA,NA	NA|600aa|up_9|NZ_CP050731.1_983994_985794_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|up_8|NZ_CP050731.1_985793_987506_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_7|NZ_CP050731.1_987581_988316_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|up_6|NZ_CP050731.1_988403_989357_-	PRK15379, PRK15379, type III secretion system effector SopD	cse2gr11|187aa|up_5|NZ_CP050731.1_994028_994589_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|353aa|up_4|NZ_CP050731.1_994602_995661_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|NZ_CP050731.1_995671_996418_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|NZ_CP050731.1_996399_997050_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|307aa|up_1|NZ_CP050731.1_997046_997967_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP050731.1_997966_998260_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|349aa|down_0|NZ_CP050731.1_1000267_1001314_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP050731.1_1001564_1002473_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|480aa|down_2|NZ_CP050731.1_1002482_1003922_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP050731.1_1003908_1004514_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP050731.1_1004564_1004888_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP050731.1_1005078_1005390_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP050731.1_1005408_1006119_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP050731.1_1006118_1006598_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP050731.1_1006594_1007644_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP050731.1_1007624_1008386_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_012051385.1_ASM1205138v1	NZ_CP050731	Salmonella enterica subsp. enterica serovar Typhimurium strain ST101 chromosome, complete genome	4	999676-1000253	3,4,3	PILER-CR,CRISPRCasFinder,CRT	no	cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,WYL,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,cas14j,DEDDh,DinG,RT	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	8,9,9	9	TypeI-E	cas3,PD-DExK,WYL,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,cas14j,DEDDh,DinG,RT	NA,NA	NA|600aa|up_9|NZ_CP050731.1_983994_985794_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|up_8|NZ_CP050731.1_985793_987506_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_7|NZ_CP050731.1_987581_988316_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|up_6|NZ_CP050731.1_988403_989357_-	PRK15379, PRK15379, type III secretion system effector SopD	cse2gr11|187aa|up_5|NZ_CP050731.1_994028_994589_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|353aa|up_4|NZ_CP050731.1_994602_995661_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|NZ_CP050731.1_995671_996418_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|NZ_CP050731.1_996399_997050_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|307aa|up_1|NZ_CP050731.1_997046_997967_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP050731.1_997966_998260_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|349aa|down_0|NZ_CP050731.1_1000267_1001314_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP050731.1_1001564_1002473_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|480aa|down_2|NZ_CP050731.1_1002482_1003922_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP050731.1_1003908_1004514_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP050731.1_1004564_1004888_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP050731.1_1005078_1005390_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP050731.1_1005408_1006119_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP050731.1_1006118_1006598_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP050731.1_1006594_1007644_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP050731.1_1007624_1008386_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_012051385.1_ASM1205138v1	NZ_CP050732	Salmonella enterica subsp. enterica serovar Typhimurium strain ST101 plasmid pST101-1, complete sequence	1	71398-71485	1	CRISPRCasFinder	no		DEDDh	Orphan	CTATCTGCGGGCTGAAACTATCACCAGCG	29	1	1	71427-71456	NZ_CP050732.1_139844-139873	NA	1	1	Orphan	cas3,PD-DExK,WYL,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,cas14j,DEDDh,DinG,RT	NA|56aa|up_8|NZ_CP050732.1_61126_61294_+,NA|295aa|up_7|NZ_CP050732.1_61465_62350_-,NA|137aa|down_9|NZ_CP050732.1_84262_84673_-	NA|892aa|up_9|NZ_CP050732.1_58279_60955_+	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	NA|56aa|up_8|NZ_CP050732.1_61126_61294_+	NA	NA|295aa|up_7|NZ_CP050732.1_61465_62350_-	NA	NA|530aa|up_6|NZ_CP050732.1_62418_64008_-	pfam01526, DDE_Tnp_Tn3, Tn3 transposase DDE domain	NA|235aa|up_5|NZ_CP050732.1_63998_64703_+	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|214aa|up_4|NZ_CP050732.1_64846_65488_-	pfam00302, CAT, Chloramphenicol acetyltransferase	NA|235aa|up_3|NZ_CP050732.1_65583_66288_+	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|287aa|up_2|NZ_CP050732.1_66546_67407_+	pfam02522, Antibiotic_NAT, Aminoglycoside 3-N-acetyltransferase	NA|181aa|up_1|NZ_CP050732.1_67419_67962_+	pfam13238, AAA_18, AAA domain	NA|235aa|up_0|NZ_CP050732.1_68676_69381_-	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|219aa|down_0|NZ_CP050732.1_73956_74613_+	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown]	NA|130aa|down_1|NZ_CP050732.1_74931_75321_-	pfam00239, Resolvase, Resolvase, N terminal domain	NA|235aa|down_2|NZ_CP050732.1_75311_76016_+	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|292aa|down_3|NZ_CP050732.1_76263_77139_-	PRK15442, PRK15442, beta-lactamase TEM; Provisional	NA|235aa|down_4|NZ_CP050732.1_77736_78441_-	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|542aa|down_5|NZ_CP050732.1_79428_81054_+	PRK11598, PRK11598, putative metal dependent hydrolase; Provisional	NA|127aa|down_6|NZ_CP050732.1_81171_81552_+	cd14264, DAGK_IM, Integral membrane diacylglycerol kinase	NA|274aa|down_7|NZ_CP050732.1_82055_82877_+	pfam00665, rve, Integrase core domain	NA|235aa|down_8|NZ_CP050732.1_83155_83860_-	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|137aa|down_9|NZ_CP050732.1_84262_84673_-	NA
