assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_012050905.1_ASM1205090v1	NZ_CP050723	Salmonella enterica subsp. enterica serovar Enteritidis strain SE74 chromosome, complete genome	1	940674-941313	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAAC,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAAC	27,29,27	0	0	NA	NA	I-E:I-E:I-E	9,10,10	10	TypeI-E	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,cas14j	NA,NA	NA|179aa|up_9|NZ_CP050723.1_929219_929756_-	PRK15260, PRK15260, fimbrial protein SteF; Provisional	NA|157aa|up_8|NZ_CP050723.1_929752_930223_-	PRK15276, PRK15276, putative fimbrial subunit SteE; Provisional	NA|169aa|up_7|NZ_CP050723.1_930237_930744_-	PRK15275, PRK15275, putative fimbrial protein SteD; Provisional	NA|258aa|up_6|NZ_CP050723.1_930763_931537_-	PRK15274, PRK15274, putative periplasmic fimbrial chaperone protein SteC; Provisional	NA|900aa|up_5|NZ_CP050723.1_931549_934249_-	PRK15273, PRK15273, fimbrial biogenesis outer membrane usher protein	NA|196aa|up_4|NZ_CP050723.1_934328_934916_-	PRK15261, PRK15261, fimbrial protein SteA; Provisional	NA|267aa|up_3|NZ_CP050723.1_935523_936324_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_2|NZ_CP050723.1_936551_938189_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_1|NZ_CP050723.1_938271_939570_+	PRK00077, eno, enolase; Provisional	NA|224aa|up_0|NZ_CP050723.1_939705_940377_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|266aa|down_0|NZ_CP050723.1_941411_942209_+	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|121aa|down_1|NZ_CP050723.1_942296_942659_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|down_2|NZ_CP050723.1_943082_944882_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|down_3|NZ_CP050723.1_944881_946594_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|down_4|NZ_CP050723.1_946695_947430_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|down_5|NZ_CP050723.1_947517_948471_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|888aa|down_6|NZ_CP050723.1_948914_951578_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|519aa|down_7|NZ_CP050723.1_951589_953146_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|185aa|down_8|NZ_CP050723.1_953142_953697_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|353aa|down_9|NZ_CP050723.1_953710_954769_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI
GCF_012050905.1_ASM1205090v1	NZ_CP050723	Salmonella enterica subsp. enterica serovar Enteritidis strain SE74 chromosome, complete genome	2	957465-957981	2,2	CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29	0	0	NA	NA	I-E:I-E	8,8	8	TypeI-E	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,cas14j	NA,NA	NA|245aa|up_9|NZ_CP050723.1_946695_947430_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|up_8|NZ_CP050723.1_947517_948471_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|888aa|up_7|NZ_CP050723.1_948914_951578_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|519aa|up_6|NZ_CP050723.1_951589_953146_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|185aa|up_5|NZ_CP050723.1_953142_953697_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|353aa|up_4|NZ_CP050723.1_953710_954769_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|NZ_CP050723.1_954779_955526_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|NZ_CP050723.1_955507_956158_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|307aa|up_1|NZ_CP050723.1_956154_957075_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP050723.1_957074_957368_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|349aa|down_0|NZ_CP050723.1_957995_959042_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP050723.1_959292_960201_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|480aa|down_2|NZ_CP050723.1_960210_961650_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP050723.1_961636_962242_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP050723.1_962292_962616_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP050723.1_962806_963118_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP050723.1_963136_963847_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP050723.1_963846_964326_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP050723.1_964322_965372_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP050723.1_965352_966114_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_012050905.1_ASM1205090v1	NZ_CP050724	Salmonella enterica subsp. enterica serovar Enteritidis strain SE74 plasmid pSE74-1, complete sequence	1	41906-42025	1	CRISPRCasFinder	no		csa3	Orphan	TGCGTACCCATCCACCTTTCAGTGCGTACCCATCCACCTTTCA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,cas14j	NA|248aa|up_9|NZ_CP050724.1_34833_35577_+,NA|86aa|up_7|NZ_CP050724.1_36407_36665_-,NA|35aa|up_6|NZ_CP050724.1_36793_36898_-,NA|63aa|up_5|NZ_CP050724.1_37127_37316_+,NA|118aa|up_3|NZ_CP050724.1_39010_39364_-,NA|149aa|up_2|NZ_CP050724.1_39500_39947_-,NA|63aa|down_3|NZ_CP050724.1_45115_45304_-	NA|248aa|up_9|NZ_CP050724.1_34833_35577_+	NA	NA|259aa|up_8|NZ_CP050724.1_35573_36350_+	pfam00589, Phage_integrase, Phage integrase family	NA|86aa|up_7|NZ_CP050724.1_36407_36665_-	NA	NA|35aa|up_6|NZ_CP050724.1_36793_36898_-	NA	NA|63aa|up_5|NZ_CP050724.1_37127_37316_+	NA	NA|400aa|up_4|NZ_CP050724.1_37325_38525_+	pfam04986, Y2_Tnp, Putative transposase	NA|118aa|up_3|NZ_CP050724.1_39010_39364_-	NA	NA|149aa|up_2|NZ_CP050724.1_39500_39947_-	NA	NA|281aa|up_1|NZ_CP050724.1_39950_40793_-	pfam01051, Rep_3, Initiator Replication protein	NA|280aa|up_0|NZ_CP050724.1_40813_41653_-	pfam01051, Rep_3, Initiator Replication protein	NA|84aa|down_0|NZ_CP050724.1_42887_43139_+	PRK02854, PRK02854, primosomal protein DnaT	NA|94aa|down_1|NZ_CP050724.1_43128_43410_+	COG2026, RelE, Cytotoxic translational repressor of toxin-antitoxin stability system [Translation, ribosomal structure and biogenesis / Cell division and chromosome partitioning]	NA|400aa|down_2|NZ_CP050724.1_43906_45106_-	pfam04986, Y2_Tnp, Putative transposase	NA|63aa|down_3|NZ_CP050724.1_45115_45304_-	NA	NA|265aa|down_4|NZ_CP050724.1_46882_47677_+	cd05150, APH, Aminoglycoside 3'-phosphotransferase	NA|235aa|down_5|NZ_CP050724.1_47983_48688_+	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|160aa|down_6|NZ_CP050724.1_48776_49256_+	pfam02082, Rrf2, Transcriptional regulator	NA|1051aa|down_7|NZ_CP050724.1_49325_52478_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|392aa|down_8|NZ_CP050724.1_52501_53677_-	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit	NA|235aa|down_9|NZ_CP050724.1_53996_54701_+	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
