assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_012050205.1_ASM1205020v1	NZ_CP050709	Salmonella enterica subsp. enterica serovar Enteritidis strain SE109 chromosome, complete genome	1	941002-941641	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAAC,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAAC	27,29,27	0	0	NA	NA	I-E:I-E:I-E	9,10,10	10	TypeI-E	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,cas14j	NA|344aa|up_9|NZ_CP050709.1_928463_929495_-,NA	NA|344aa|up_9|NZ_CP050709.1_928463_929495_-	NA	NA|157aa|up_8|NZ_CP050709.1_930080_930551_-	PRK15276, PRK15276, putative fimbrial subunit SteE; Provisional	NA|169aa|up_7|NZ_CP050709.1_930565_931072_-	PRK15275, PRK15275, putative fimbrial protein SteD; Provisional	NA|258aa|up_6|NZ_CP050709.1_931091_931865_-	PRK15274, PRK15274, putative periplasmic fimbrial chaperone protein SteC; Provisional	NA|900aa|up_5|NZ_CP050709.1_931877_934577_-	PRK15273, PRK15273, fimbrial biogenesis outer membrane usher protein	NA|196aa|up_4|NZ_CP050709.1_934656_935244_-	PRK15261, PRK15261, fimbrial protein SteA; Provisional	NA|267aa|up_3|NZ_CP050709.1_935851_936652_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_2|NZ_CP050709.1_936879_938517_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_1|NZ_CP050709.1_938599_939898_+	PRK00077, eno, enolase; Provisional	NA|224aa|up_0|NZ_CP050709.1_940033_940705_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|266aa|down_0|NZ_CP050709.1_941739_942537_+	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|121aa|down_1|NZ_CP050709.1_942624_942987_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|down_2|NZ_CP050709.1_943410_945210_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|down_3|NZ_CP050709.1_945209_946922_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|down_4|NZ_CP050709.1_947023_947758_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|down_5|NZ_CP050709.1_947845_948799_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|888aa|down_6|NZ_CP050709.1_949242_951906_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|519aa|down_7|NZ_CP050709.1_951917_953474_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|185aa|down_8|NZ_CP050709.1_953470_954025_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|353aa|down_9|NZ_CP050709.1_954038_955097_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI
GCF_012050205.1_ASM1205020v1	NZ_CP050709	Salmonella enterica subsp. enterica serovar Enteritidis strain SE109 chromosome, complete genome	2	957793-958309	2,2	CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29	0	0	NA	NA	I-E:I-E	8,8	8	TypeI-E	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,cas14j	NA,NA	NA|245aa|up_9|NZ_CP050709.1_947023_947758_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|up_8|NZ_CP050709.1_947845_948799_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|888aa|up_7|NZ_CP050709.1_949242_951906_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|519aa|up_6|NZ_CP050709.1_951917_953474_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|185aa|up_5|NZ_CP050709.1_953470_954025_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|353aa|up_4|NZ_CP050709.1_954038_955097_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|NZ_CP050709.1_955107_955854_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|NZ_CP050709.1_955835_956486_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|307aa|up_1|NZ_CP050709.1_956482_957403_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP050709.1_957402_957696_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|349aa|down_0|NZ_CP050709.1_958323_959370_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP050709.1_959620_960529_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|480aa|down_2|NZ_CP050709.1_960538_961978_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP050709.1_961964_962570_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP050709.1_962620_962944_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP050709.1_963134_963446_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP050709.1_963464_964175_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP050709.1_964174_964654_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP050709.1_964650_965700_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP050709.1_965680_966442_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_012050205.1_ASM1205020v1	NZ_CP050710	Salmonella enterica subsp. enterica serovar Enteritidis strain SE109 plasmid pSE109-1, complete sequence	1	15526-15645	1	CRISPRCasFinder	no			Orphan	TGAAAGGTGGATGGGTACGCACTGAAAGGTGGATGGGTACGCA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,cas14j	NA|117aa|up_9|NZ_CP050710.1_6155_6506_-,NA|63aa|up_3|NZ_CP050710.1_12246_12435_+,NA|149aa|down_2|NZ_CP050710.1_17603_18050_+,NA|118aa|down_3|NZ_CP050710.1_18186_18540_+,NA|63aa|down_5|NZ_CP050710.1_20234_20423_-	NA|117aa|up_9|NZ_CP050710.1_6155_6506_-	NA	NA|332aa|up_8|NZ_CP050710.1_7185_8181_+	pfam18144, SMODS, Second Messenger Oligonucleotide or Dinucleotide Synthetase domain	NA|311aa|up_7|NZ_CP050710.1_8184_9117_+	pfam18159, S_4TM, SMODS-associating 4TM effector domain	NA|235aa|up_6|NZ_CP050710.1_9220_9925_+	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|134aa|up_5|NZ_CP050710.1_11235_11637_-	PRK09812, PRK09812, type II toxin-antitoxin system ChpB family toxin	NA|86aa|up_4|NZ_CP050710.1_11569_11827_-	PRK11347, PRK11347, antitoxin ChpS; Provisional	NA|63aa|up_3|NZ_CP050710.1_12246_12435_+	NA	NA|400aa|up_2|NZ_CP050710.1_12444_13644_+	pfam04986, Y2_Tnp, Putative transposase	NA|94aa|up_1|NZ_CP050710.1_14140_14422_-	COG2026, RelE, Cytotoxic translational repressor of toxin-antitoxin stability system [Translation, ribosomal structure and biogenesis / Cell division and chromosome partitioning]	NA|84aa|up_0|NZ_CP050710.1_14411_14663_-	PRK02854, PRK02854, primosomal protein DnaT	NA|280aa|down_0|NZ_CP050710.1_15897_16737_+	pfam01051, Rep_3, Initiator Replication protein	NA|281aa|down_1|NZ_CP050710.1_16757_17600_+	pfam01051, Rep_3, Initiator Replication protein	NA|149aa|down_2|NZ_CP050710.1_17603_18050_+	NA	NA|118aa|down_3|NZ_CP050710.1_18186_18540_+	NA	NA|400aa|down_4|NZ_CP050710.1_19025_20225_-	pfam04986, Y2_Tnp, Putative transposase	NA|63aa|down_5|NZ_CP050710.1_20234_20423_-	NA	NA|265aa|down_6|NZ_CP050710.1_22001_22796_+	cd05150, APH, Aminoglycoside 3'-phosphotransferase	NA|235aa|down_7|NZ_CP050710.1_23102_23807_+	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|160aa|down_8|NZ_CP050710.1_23895_24375_+	pfam02082, Rrf2, Transcriptional regulator	NA|1051aa|down_9|NZ_CP050710.1_24444_27597_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]
