The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP050709	Salmonella enterica subsp. enterica serovar Enteritidis strain SE109 chromosome, complete genome	4679799	1414706	1420759	4679799		Salmonella_virus(50.0%)	6	NA	NA
WP_105789229.1|1414706_1414874_+	hypothetical protein	NA	A0A1R3Y5S2	Salmonella_virus	63.5	1.3e-11
WP_105789228.1|1414889_1415033_+	hypothetical protein	NA	A0A1R3Y5S2	Salmonella_virus	82.9	1.7e-12
WP_000400616.1|1416022_1417945_-	acyltransferase	NA	A0A1R3Y5Q6	Salmonella_virus	77.3	5.6e-300
WP_000703599.1|1417962_1418217_-	glycosyltransferase	NA	A8CG95	Salmonella_phage	79.5	3.1e-25
WP_001576268.1|1418185_1418575_-	GtrA family protein	NA	A0A192Y6N5	Salmonella_phage	85.6	1.1e-50
WP_000377779.1|1419817_1420759_-	membrane protein	NA	E7DYY8	Enterobacteria_phage	87.8	1.6e-146
>prophage 2
NZ_CP050709	Salmonella enterica subsp. enterica serovar Enteritidis strain SE109 chromosome, complete genome	4679799	1657192	1666363	4679799	tRNA	Enterobacteria_phage(66.67%)	10	NA	NA
WP_000569168.1|1657192_1658140_+	ABC transporter ATP-binding protein	NA	F2Y1V5	Organic_Lake_phycodnavirus	27.8	2.8e-10
WP_000824854.1|1658123_1658855_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_001261696.1|1658835_1658943_-	protein YohO	NA	NA	NA	NA	NA
WP_001240420.1|1659002_1659734_-	HTH-type transcriptional regulator MlrA	NA	Q9EYF2	Enterobacteria_phage	86.9	2.5e-99
WP_000272845.1|1659956_1661642_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	91.1	6.2e-279
WP_000598637.1|1661638_1662358_+	two-component system response regulator BtsR	NA	NA	NA	NA	NA
WP_000950414.1|1662404_1662872_+	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	89.7	4.3e-73
WP_001197951.1|1662928_1663459_-	YehR family lipoprotein	NA	NA	NA	NA	NA
WP_000703145.1|1663630_1664089_-	YehR family lipoprotein	NA	Q9EYF5	Enterobacteria_phage	72.5	6.4e-53
WP_000195340.1|1664329_1666363_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SDF2	Indivirus	26.9	6.1e-55
>prophage 3
NZ_CP050709	Salmonella enterica subsp. enterica serovar Enteritidis strain SE109 chromosome, complete genome	4679799	1733561	1744068	4679799		Enterobacteria_phage(37.5%)	10	NA	NA
WP_001144948.1|1733561_1734965_+	colanic acid biosynthesis protein WcaM	NA	A0A291LBB9	Klebsiella_phage	26.5	4.0e-21
WP_000981469.1|1735142_1736036_+	GalU regulator GalF	NA	A0A127AW70	Bacillus_phage	42.2	4.8e-44
WP_000697846.1|1736412_1737498_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	53.9	1.6e-102
WP_001023658.1|1737497_1738397_+	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	36.0	5.1e-30
WP_000857535.1|1738444_1739323_+	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	65.5	2.1e-108
WP_000973709.1|1739323_1739875_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	58.0	1.3e-52
WP_000018223.1|1739880_1740855_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_000648783.1|1740870_1741644_+	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_000565913.1|1741648_1742728_+	CDP-glucose 4,6-dehydratase	NA	A0A222YY99	Synechococcus_phage	24.5	1.7e-16
WP_000126349.1|1742754_1744068_+	lipopolysaccharide biosynthesis protein RfbH	NA	H8ZJ36	Ostreococcus_tauri_virus	35.1	7.0e-52
>prophage 4
NZ_CP050709	Salmonella enterica subsp. enterica serovar Enteritidis strain SE109 chromosome, complete genome	4679799	1856991	1904487	4679799	holin,terminase,transposase,portal,capsid,integrase,tail,plate,head,protease	Salmonella_phage(79.25%)	60	1859892:1859906	1908082:1908096
WP_001680077.1|1856991_1858266_-|integrase	integrase arm-type DNA-binding domain-containing protein	integrase	B7SYF8	Stenotrophomonas_phage	39.9	2.4e-73
WP_000598920.1|1859591_1860389_-	DgsA anti-repressor MtfA	NA	NA	NA	NA	NA
1859892:1859906	attL	AGGGATGCCGCTGGC	NA	NA	NA	NA
WP_000532847.1|1860680_1861670_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A192Y7M7	Salmonella_phage	100.0	8.6e-196
WP_001527041.1|1861671_1861899_-	DUF4224 domain-containing protein	NA	Q8HAA9	Salmonella_phage	100.0	3.2e-37
WP_001061370.1|1861938_1862508_-	3'-5' exoribonuclease	NA	A0A192Y6E0	Salmonella_phage	99.5	9.3e-110
WP_000208076.1|1862504_1863368_-	DUF551 domain-containing protein	NA	S4TSR6	Salmonella_phage	49.2	5.2e-64
WP_000267991.1|1863364_1863658_-	hypothetical protein	NA	A0A1V0E5L2	Salmonella_phage	100.0	1.5e-50
WP_000065085.1|1863929_1864289_-	Eaf protein	NA	T1SA95	Salmonella_phage	89.9	1.0e-58
WP_000071068.1|1864285_1864801_-	DUF262 domain-containing protein	NA	A0A2H4FWH2	Salmonella_phage	96.5	1.3e-94
WP_000764235.1|1864797_1865028_-	hypothetical protein	NA	Q8HAA4	Salmonella_phage	100.0	2.0e-34
WP_000008351.1|1865098_1865638_-	hypothetical protein	NA	A0A192Y8M4	Salmonella_phage	100.0	2.6e-98
WP_000551790.1|1865732_1866650_-	recombination-associated protein RdgC	NA	S4TWL4	Salmonella_phage	59.7	1.3e-97
WP_000078504.1|1867219_1867471_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001067433.1|1867546_1867732_-	hypothetical protein	NA	A0A1C9II97	Salmonella_phage	73.3	1.2e-13
WP_001020644.1|1867937_1868633_-	helix-turn-helix transcriptional regulator	NA	Q8HAA0	Salmonella_phage	99.6	2.7e-127
WP_001191666.1|1868730_1868955_+	helix-turn-helix transcriptional regulator	NA	A0A1C9IHV8	Salmonella_phage	100.0	1.9e-34
WP_000509728.1|1868983_1869538_+	hypothetical protein	NA	A0A1C9II13	Salmonella_phage	98.9	3.4e-101
WP_001087406.1|1869534_1870692_+	peptidase	NA	Q8HA97	Salmonella_phage	98.4	2.8e-214
WP_000620702.1|1870688_1870913_+	hypothetical protein	NA	A0A1C9II64	Salmonella_phage	100.0	3.3e-39
WP_000096529.1|1870909_1871884_+	hypothetical protein	NA	A0A1C9IHW0	Salmonella_phage	97.8	1.2e-165
WP_000054227.1|1871880_1872354_+	PerC family transcriptional regulator	NA	A0A1C9IHW0	Salmonella_phage	94.6	3.9e-53
WP_000200166.1|1872350_1873232_+	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA	A0A1C9II58	Salmonella_phage	96.2	8.3e-166
WP_000779149.1|1873240_1873630_+	RusA family crossover junction endodeoxyribonuclease	NA	A0A1C9IIA0	Salmonella_phage	99.2	1.9e-69
WP_001061459.1|1873646_1874507_+	KilA-N domain-containing protein	NA	A0A192Y6F8	Salmonella_phage	98.3	1.5e-159
WP_012543375.1|1874514_1875504_+	DUF968 domain-containing protein	NA	A0A1C9IHZ5	Salmonella_phage	97.6	1.9e-190
WP_001047141.1|1875517_1876270_+	antitermination protein	NA	A0A192Y5X6	Salmonella_phage	92.0	1.9e-134
WP_000357930.1|1876319_1877393_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000765639.1|1877405_1877978_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001294874.1|1878066_1878456_+	membrane protein	NA	K7PHB9	Enterobacterial_phage	71.0	1.8e-40
WP_000226304.1|1878442_1878724_+|holin	phage holin family protein	holin	K7PKN9	Enterobacterial_phage	80.6	3.3e-36
WP_001075993.1|1878723_1879341_+	glycoside hydrolase family 19 protein	NA	Q8HA86	Salmonella_phage	78.9	3.2e-92
WP_000127618.1|1879337_1879877_+	DUF2514 domain-containing protein	NA	A0A0A0P0G7	Enterobacteria_phage	37.2	5.3e-06
WP_001135228.1|1879900_1880251_+	HNH endonuclease	NA	M1FQV2	Enterobacteria_phage	95.7	3.1e-63
WP_000501481.1|1880397_1880835_+|terminase	phage terminase small subunit P27 family	terminase	A0A1J0GV10	Halomonas_phage	63.7	1.6e-32
WP_000257219.1|1880834_1882565_+|terminase	terminase large subunit	terminase	Q8W631	Enterobacteria_phage	58.9	3.2e-198
WP_000838395.1|1882561_1882720_+	hypothetical protein	NA	NA	NA	NA	NA
WP_077905357.1|1882836_1883931_+|portal	phage portal protein	portal	A0A1W6JP33	Morganella_phage	82.7	7.3e-180
WP_000003793.1|1883923_1884526_+|head,protease	HK97 family phage prohead protease	head,protease	Q8SBH9	Shigella_phage	91.5	2.0e-99
WP_000766103.1|1884535_1885765_+|capsid	phage major capsid protein	capsid	Q8SBH8	Shigella_phage	90.9	1.8e-206
WP_000927251.1|1885844_1886168_+|head,tail	phage gp6-like head-tail connector protein	head,tail	Q8SBH7	Shigella_phage	72.0	2.6e-40
WP_000776844.1|1886164_1886569_+|head	phage head closure protein	head	A0A192Y6C2	Salmonella_phage	96.3	1.5e-69
WP_001135695.1|1886540_1887053_+	hypothetical protein	NA	Q8HAC8	Salmonella_phage	93.5	1.4e-85
WP_000779215.1|1887049_1887610_+	hypothetical protein	NA	A0A192Y5U4	Salmonella_phage	99.5	3.0e-105
WP_000497739.1|1887613_1887778_+	DUF2635 domain-containing protein	NA	Q8HAC6	Salmonella_phage	100.0	1.0e-24
WP_001007993.1|1887767_1889264_+|tail	tail sheath protein	tail	Q8HAC5	Salmonella_phage	99.2	3.0e-277
WP_000515952.1|1889263_1889620_+|tail	tail protein	tail	A0A192Y8K0	Salmonella_phage	100.0	2.6e-62
WP_000588852.1|1889616_1889943_+|tail	phage tail assembly protein	tail	Q8HAC3	Salmonella_phage	99.1	2.3e-52
WP_000785387.1|1890027_1891956_+|tail	phage tail tape measure protein	tail	Q8HAC2	Salmonella_phage	99.5	0.0e+00
WP_000863817.1|1891989_1893330_+	DNA circularization protein	NA	A0A192Y5U9	Salmonella_phage	99.1	1.1e-249
WP_001066630.1|1893326_1894385_+|plate	baseplate protein	plate	A0A192Y7L7	Salmonella_phage	100.0	1.3e-202
WP_001273650.1|1894384_1894918_+|plate	phage baseplate assembly protein	plate	Q8HAB9	Salmonella_phage	99.4	2.1e-95
WP_000605050.1|1894922_1895336_+	hypothetical protein	NA	Q8HAB8	Salmonella_phage	100.0	1.1e-75
WP_001699732.1|1895328_1896408_+|plate	baseplate J/gp47 family protein	plate	A0A192Y6E4	Salmonella_phage	99.4	5.5e-204
WP_001207832.1|1896410_1896998_+	DUF2313 domain-containing protein	NA	A0A192Y5V3	Salmonella_phage	100.0	2.9e-114
WP_000554738.1|1896984_1898547_+	hypothetical protein	NA	Q8HAB4	Salmonella_phage	99.8	9.8e-287
WP_015701331.1|1898516_1899116_+|tail	tail fiber assembly protein	tail	Q8HAB3	Salmonella_phage	100.0	5.9e-107
WP_000492926.1|1899400_1900408_-	type III secretion system effector arginine glycosyltransferase	NA	Q8HAB2	Salmonella_phage	100.0	7.9e-197
WP_001526483.1|1900620_1900842_+	helix-turn-helix domain-containing protein	NA	Q8HAB1	Salmonella_phage	100.0	1.2e-36
WP_001176778.1|1902184_1903003_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001028172.1|1903464_1904487_+|transposase	IS110-like element ISSaen1 family transposase	transposase	NA	NA	NA	NA
1908082:1908096	attR	AGGGATGCCGCTGGC	NA	NA	NA	NA
>prophage 5
NZ_CP050709	Salmonella enterica subsp. enterica serovar Enteritidis strain SE109 chromosome, complete genome	4679799	2436673	2452617	4679799	holin,tRNA	Escherichia_phage(64.71%)	23	NA	NA
WP_001082296.1|2436673_2437108_+	universal stress protein UspF	NA	A0A1W6JNV4	Morganella_phage	52.1	9.4e-30
WP_000159240.1|2437157_2437496_-	EamA family transporter	NA	NA	NA	NA	NA
WP_000729249.1|2438135_2438309_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000802786.1|2438341_2438887_-	glycoside hydrolase family 108 protein	NA	A0A0U2S643	Escherichia_phage	83.4	2.3e-89
WP_000445513.1|2438883_2439165_-|holin	phage holin family protein	holin	K7PKN9	Enterobacterial_phage	49.4	1.3e-16
WP_001688615.1|2439154_2439343_-	hypothetical protein	NA	Q8W636	Enterobacteria_phage	57.4	9.4e-11
WP_000900605.1|2439264_2439660_-	tellurite resistance TerB family protein	NA	Q71TK7	Escherichia_phage	88.9	4.7e-44
WP_000640113.1|2441830_2442367_-	DUF1133 family protein	NA	A0A0U2S606	Escherichia_phage	70.9	1.4e-70
WP_000774470.1|2442363_2442654_-	DUF1364 domain-containing protein	NA	A0A0U2KD41	Escherichia_phage	76.0	5.1e-40
WP_000940751.1|2442653_2443253_-	DUF1367 family protein	NA	A0A0U2RT94	Escherichia_phage	82.9	5.5e-97
WP_000734094.1|2443315_2443486_-	hypothetical protein	NA	A0A0U2I1S4	Escherichia_phage	61.8	8.5e-11
WP_000882662.1|2443776_2443989_-	type I toxin-antitoxin system Hok family toxin	NA	A0A0U2QV81	Escherichia_phage	95.7	2.5e-28
WP_000556390.1|2444358_2445291_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001033796.1|2445287_2445842_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001676916.1|2446003_2446333_-	DUF977 family protein	NA	A0A0U2QQN3	Escherichia_phage	51.7	6.5e-23
WP_001227859.1|2446605_2447073_+	helix-turn-helix domain-containing protein	NA	A0A0U2QW76	Escherichia_phage	66.9	1.0e-53
WP_085981757.1|2447457_2447613_+	DUF1391 family protein	NA	M4QQ57	Salicola_phage	48.9	2.6e-06
WP_000004762.1|2447720_2448242_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000560208.1|2448679_2448901_+	cell division protein FtsZ	NA	A0A0U2RTC4	Escherichia_phage	83.6	7.9e-33
WP_000800272.1|2448985_2449303_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001676915.1|2449330_2449948_+	exodeoxyribonuclease	NA	A0A088CD28	Shigella_phage	41.9	2.5e-36
WP_001156217.1|2450264_2451200_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	97.3	7.2e-144
WP_000123686.1|2451243_2452617_-	ATP-dependent RNA helicase DbpA	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.0	2.1e-51
>prophage 6
NZ_CP050709	Salmonella enterica subsp. enterica serovar Enteritidis strain SE109 chromosome, complete genome	4679799	2643907	2693157	4679799	holin,lysis,integrase,tail,protease	Salmonella_phage(27.27%)	48	2673672:2673701	2693293:2693322
WP_000984498.1|2643907_2644789_-|protease	protease HtpX	protease	NA	NA	NA	NA
WP_001091237.1|2644982_2647031_-	carboxy terminal-processing peptidase	NA	A0A0R6PIZ1	Moraxella_phage	33.5	8.0e-87
WP_000431401.1|2647050_2647737_-	RNA chaperone ProQ	NA	NA	NA	NA	NA
WP_001518229.1|2647834_2648332_-	GAF domain-containing protein	NA	NA	NA	NA	NA
WP_001207294.1|2648460_2649744_+	membrane integrity lipid transport subunit YebS	NA	NA	NA	NA	NA
WP_164092565.1|2649712_2652346_+	MCE family protein	NA	NA	NA	NA	NA
WP_001531515.1|2652423_2653863_+	16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF	NA	NA	NA	NA	NA
WP_024131108.1|2653980_2654217_+	DUF1480 family protein	NA	NA	NA	NA	NA
WP_000457838.1|2654327_2654519_+	YebW family protein	NA	NA	NA	NA	NA
WP_000986173.1|2654537_2655188_-	protein-serine/threonine phosphatase	NA	A0A222YWF0	Escherichia_phage	50.9	7.2e-58
WP_001134856.1|2655411_2655576_-	membrane protein	NA	NA	NA	NA	NA
WP_000182071.1|2655860_2656583_-	SPI-1 type III secretion system guanine nucleotide exchange factor SopE2	NA	NA	NA	NA	NA
WP_000422882.1|2657266_2657662_+	DUF1398 domain-containing protein	NA	C6ZCX4	Enterobacteria_phage	32.8	9.2e-16
WP_000030934.1|2657991_2658468_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001025515.1|2658840_2659260_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_001576019.1|2659632_2659902_+	hypothetical protein	NA	B6SCX2	Bacteriophage	47.9	3.1e-07
WP_001576018.1|2660067_2660208_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001233445.1|2663346_2664261_+	DMT family transporter	NA	NA	NA	NA	NA
WP_000480735.1|2664393_2664552_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000848072.1|2664561_2665176_+	disulfide bond formation protein B	NA	NA	NA	NA	NA
WP_000951652.1|2665663_2665810_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000457876.1|2666310_2666436_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012543349.1|2667005_2667206_+	phage encoded PagK	NA	NA	NA	NA	NA
WP_001687735.1|2667302_2667803_-|tail	tail fiber assembly protein	tail	A0A0M4RTP2	Salmonella_phage	77.4	1.5e-63
WP_000348541.1|2669907_2670399_-	DUF1441 family protein	NA	Q9EYD0	Enterobacteria_phage	56.2	7.1e-42
WP_001576014.1|2670453_2670642_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000789530.1|2670706_2670874_+	lytic enzyme	NA	NA	NA	NA	NA
WP_001050883.1|2671130_2671664_-	DUF2514 domain-containing protein	NA	A0A291LBG9	Klebsiella_phage	43.0	5.4e-11
WP_001013467.1|2671717_2671948_-	hypothetical protein	NA	Q8HA86	Salmonella_phage	93.7	6.1e-28
WP_077681935.1|2672137_2672632_+	RecE	NA	A0A0U2I1R6	Escherichia_phage	70.3	3.7e-22
WP_000622159.1|2673275_2673545_+|integrase	tyrosine-type recombinase/integrase	integrase	K7PHK0	Enterobacteria_phage	47.8	2.7e-11
2673672:2673701	attL	AAATAAAAAGAGACCGAATACGATTCCTGT	NA	NA	NA	NA
WP_001536069.1|2674489_2675290_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000161704.1|2675769_2676492_+	SPI-1 type III secretion system guanine nucleotide exchange factor SopE	NA	NA	NA	NA	NA
WP_001152416.1|2680546_2681242_-|tail	phage minor tail protein L	tail	A0A0K2FJ01	Enterobacteria_phage	66.7	1.0e-89
WP_000877926.1|2681331_2681865_+	superoxide dismutase [Cu-Zn]	NA	Q9MC02	Salmonella_phage	54.0	1.8e-46
WP_001541990.1|2682759_2683239_-|lysis	lysis protein	lysis	Q56118	Enterobacteria_phage	77.0	1.4e-55
WP_000984586.1|2683256_2683709_-	lysozyme	NA	A0A0M4R365	Salmonella_phage	97.3	2.3e-79
WP_001574216.1|2683692_2684022_-|holin	phage holin, lambda family	holin	A0A0M3ULK9	Salmonella_phage	100.0	5.8e-56
WP_001574215.1|2684297_2684984_+	PipA/GogA/GtgA family type III secretion system effector	NA	Q9MBM0	Phage_Gifsy-2	99.6	1.8e-131
WP_000798708.1|2685344_2685794_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001574213.1|2686167_2686692_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001097218.1|2686788_2687478_-	antitermination protein	NA	I6PDF8	Cronobacter_phage	54.9	2.1e-60
WP_000784710.1|2687607_2687835_-	DNA breaking-rejoining protein	NA	A0A0M4RU10	Salmonella_phage	66.7	2.2e-14
WP_000940753.1|2687831_2688431_-	DUF1367 family protein	NA	A0A0U2RT94	Escherichia_phage	82.9	4.7e-96
WP_000972675.1|2688494_2688800_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001237395.1|2689431_2691411_-	MBL fold metallo-hydrolase	NA	A0A2P0VMX1	Tetraselmis_virus	46.3	1.9e-162
WP_001575998.1|2691824_2692103_+	excisionase	NA	A0A2H4J5E1	uncultured_Caudovirales_phage	37.5	1.4e-10
WP_000087636.1|2692077_2693157_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	52.5	3.0e-101
2693293:2693322	attR	AAATAAAAAGAGACCGAATACGATTCCTGT	NA	NA	NA	NA
>prophage 7
NZ_CP050709	Salmonella enterica subsp. enterica serovar Enteritidis strain SE109 chromosome, complete genome	4679799	2865548	2906246	4679799	tail,protease	Salmonella_phage(28.57%)	40	NA	NA
WP_000938186.1|2865548_2866229_+|protease	type III secretion system effector protease PipA	protease	Q9MBM0	Phage_Gifsy-2	71.0	2.2e-81
WP_000374046.1|2866847_2867507_+|protease	FtsH protease modulator YccA	protease	A0A2H4JFM9	uncultured_Caudovirales_phage	52.4	2.7e-44
WP_000904449.1|2867593_2867923_+	sulfurtransferase TusE	NA	NA	NA	NA	NA
WP_000072884.1|2867919_2868201_-	acylphosphatase	NA	NA	NA	NA	NA
WP_000548080.1|2868249_2869029_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_000859416.1|2869054_2869603_-	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA	NA
WP_000140478.1|2869817_2871029_+	23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	NA	NA	NA	NA	NA
WP_000561983.1|2871086_2871404_+	heat shock protein HspQ	NA	NA	NA	NA	NA
WP_001676378.1|2871448_2871862_-	CoA-binding protein	NA	NA	NA	NA	NA
WP_000847719.1|2872035_2872698_+	DUF2057 family protein	NA	NA	NA	NA	NA
WP_000424187.1|2872792_2873251_+	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_000420505.1|2873286_2875341_-	DNA helicase IV	NA	A7KV33	Bacillus_phage	27.6	8.5e-20
WP_001261222.1|2875464_2875911_+	YccF domain-containing protein	NA	NA	NA	NA	NA
WP_000950876.1|2875929_2878083_+	TIGR01666 family membrane protein	NA	NA	NA	NA	NA
WP_066038538.1|2878069_2878675_-	TfoX/Sxy family DNA transformation protein	NA	NA	NA	NA	NA
WP_000288733.1|2878891_2879401_+	cell division inhibitor SulA	NA	NA	NA	NA	NA
WP_001674965.1|2879757_2880810_+	porin OmpA	NA	NA	NA	NA	NA
WP_000877172.1|2880881_2881334_-	macrodomain Ter protein MatP	NA	NA	NA	NA	NA
WP_000156448.1|2881519_2883280_+|protease	Lon protease family protein	protease	NA	NA	NA	NA
WP_000227928.1|2883348_2883867_+	bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase	NA	NA	NA	NA	NA
WP_001537784.1|2883966_2884134_-	ribosome modulation factor	NA	NA	NA	NA	NA
WP_000759136.1|2884389_2884953_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_000433414.1|2884949_2886590_-	intermembrane transport protein PqiB	NA	NA	NA	NA	NA
WP_000333139.1|2886594_2887848_-	membrane integrity-associated transporter subunit PqiA	NA	NA	NA	NA	NA
WP_000053044.1|2887862_2889770_-	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	29.8	2.4e-53
WP_001086485.1|2889782_2891891_-	bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	NA	NA	NA	NA	NA
WP_000224079.1|2891989_2893099_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_001574119.1|2893095_2893638_-	cell division protein ZapC	NA	NA	NA	NA	NA
WP_000291723.1|2893803_2894814_-	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_000193790.1|2895021_2897634_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	22.8	6.3e-20
WP_000497441.1|2898060_2898252_+	DinI-like family protein	NA	S4TNM0	Salmonella_phage	95.2	6.2e-26
WP_001525490.1|2898522_2899209_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000334547.1|2899568_2900195_+	SOS response-associated peptidase	NA	A0A2H4J5W2	uncultured_Caudovirales_phage	63.2	1.4e-66
WP_001674638.1|2900842_2901811_-	SPI-2 type III secretion system effector SseI	NA	Q9MBL9	Phage_Gifsy-2	99.4	3.0e-193
WP_072100753.1|2902036_2902285_+|tail	phage tail protein	tail	A0A1B0VCD0	Salmonella_phage	66.2	2.1e-18
WP_000143167.1|2902288_2902870_-|tail	tail fiber assembly protein	tail	A0A0M4RTP2	Salmonella_phage	89.5	1.7e-95
WP_000583382.1|2902869_2904579_-|tail	tail fiber protein	tail	A0A0U2SAV1	Escherichia_phage	66.0	1.5e-91
WP_000729406.1|2904575_2905202_-	hypothetical protein	NA	A0A0U2RK03	Escherichia_phage	71.6	3.3e-92
WP_000274547.1|2905185_2905815_-	hypothetical protein	NA	A0A0U2RJZ0	Escherichia_phage	65.9	1.6e-75
WP_001676370.1|2905835_2906246_+	enterohemolysin	NA	H6WRX0	Salmonella_phage	100.0	5.0e-33
>prophage 8
NZ_CP050709	Salmonella enterica subsp. enterica serovar Enteritidis strain SE109 chromosome, complete genome	4679799	2977525	2984838	4679799	integrase,protease	Ralstonia_phage(16.67%)	7	2972322:2972336	2983574:2983588
2972322:2972336	attL	GGAAAATCAACGCTG	NA	NA	NA	NA
WP_001539594.1|2977525_2977903_+|integrase	integrase	integrase	A0A077KET4	Ralstonia_phage	41.0	1.2e-20
WP_001117984.1|2978064_2978262_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000934064.1|2978474_2980751_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.3	6.2e-165
WP_000520789.1|2980781_2981102_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	45.7	4.5e-13
WP_000447499.1|2981425_2981647_+	cold shock-like protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.2	9.3e-18
WP_000125875.1|2981776_2983723_-	macrolide ABC transporter ATP-binding protein/permease MacB	NA	G9BWD6	Planktothrix_phage	43.1	2.0e-39
2983574:2983588	attR	CAGCGTTGATTTTCC	NA	NA	NA	NA
WP_001201751.1|2983719_2984838_-	macrolide transporter subunit MacA	NA	A0A140XAI1	Dickeya_phage	38.9	1.4e-08
>prophage 1
NZ_CP050710	Salmonella enterica subsp. enterica serovar Enteritidis strain SE109 plasmid pSE109-1, complete sequence	90315	2413	33459	90315	transposase,integrase	Escherichia_phage(50.0%)	31	2242:2301	13757:15445
2242:2301	attL	CACGTATAGGAAATTGAAAAACCAGTCGATACCATTGTCCACGCCTTATGCCACGTGAGC	NA	NA	NA	NA
WP_072648941.1|2413_3613_-|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
WP_000957857.1|3622_3811_-	hypothetical protein	NA	NA	NA	NA	NA
WP_032409716.1|4040_4145_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000764642.1|4273_4531_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000015958.1|4588_5365_-|integrase	phage integrase family protein	integrase	I3WFA4	Macacine_betaherpesvirus	92.9	6.4e-53
WP_000129823.1|5361_6105_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000493378.1|6155_6506_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000246635.1|7185_8181_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000991830.1|8184_9117_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001067855.1|9220_9925_+|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
WP_001398199.1|11235_11637_-	type II toxin-antitoxin system toxin endoribonuclease PemK	NA	NA	NA	NA	NA
WP_000557619.1|11569_11827_-	type II toxin-antitoxin system antitoxin PemI	NA	NA	NA	NA	NA
WP_000957857.1|12246_12435_+	hypothetical protein	NA	NA	NA	NA	NA
WP_072648941.1|12444_13644_+|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
WP_000220561.1|14140_14422_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A2H4JBF4	uncultured_Caudovirales_phage	62.4	2.9e-24
WP_000121743.1|14411_14663_-	plasmid stabilization protein	NA	NA	NA	NA	NA
WP_024129959.1|15897_16737_+	replication initiation protein	NA	NA	NA	NA	NA
13757:15445	attR	GCTCACGTGGCATAAGGCGTGGACAATGGTATCGACTGGTTTTTCAATTTCCTATACGTGCACTACGCAAAGGCCAGGCCTCAGCATTTTATTATGGTGATCCCCTGGGCGAAATGCGCCTGGTAAGCAGAGTTTTTGAAATGTAAGGCCTTTGAATAAGACAAAAGGCTGCCTCATCGCTAACTTTGCAACAGTGCCCGGAAACAAACCAGCTTAATTAAGATCAGGGACATCCCCCCTCCCTGCAAAGCCCATTACCGGACTAACAACACGCAATTAGCCTTTCGCAGTTAGCGCGTAAGCTTGCGAACGGTACGCCGTGACGGTGTGTAGCATCTGCGCGTCTGAGCGGCTGCAGCCGCGAATTACGGGGCGGGTTTCAGTTCAGCGCATATCTGCAATCTGATAAACTTCGCTGCTTTCCCTTCTTCCAACAGCAATAACGAGTAAAACGACTTTCTCATCAATGACTTGATATACAAGTCTGTAGCCAGATGCACGAAGTTTGATTTTATAGCGATCAGCATGACCATGTAACCGGGCTGCGGGTACGCGTGGATTTTCCAGCCGTTCTGCCAGCTTCTTTTTGAATTGTTCACGGATGGTGTGGCCGAGTTTCTGCCATTCCTTCAGTGCTCTGCGGTCAAAAGCCAGTTCATAGGTCATCCAGGTTAACCTTCACAATTTCCGGGTTTTTCATGCGCTCATCAGCAACAGCGTTTAACTCAGCATCTTCAGCGAGTTCCCGATAGTAGGCGTAAAGTTTTGGTGGAACGCAATAGAACGCCGGTTCGTTTCGGTTCAGGATCGCAACAGCGTCCCCTTCACCTTCAGCTACGGTTCCCATAGGATTTTTTTTCAGGTCAGTAATACTGGCCGCTGTGGTTGTCAGAATTTGATAGCTCATAAGTCCTCCGCTTGTCTTATTGGCATAATAGCATCTTTAAAAGTACTCTTAAAAGTGCTTGTGTTGAGAAAAACATCAGAACAGGTGAGGTATGGCTCTTTCCGACATCGCCTTAAAACGCTCTGTAACGCGTTCTGAGCGTTTTTTCCCGTTTCGTTATAGTCAGCTACGGTTTAACGGTTTTTAACGCCGCTCAACGCTTTTTAGCGGCCTTGTTGCTGTGATCTGTTGCCATGATCCGGATAGGAGTTCAATCTTGATCAAAATTTCCTCAAGGCAACGACTGTTTTGTAAATACCCTCTAAAACGCGCTGTATCGCATTCTGAGCGATTTTTTCGATTTCACATGGTTTTCCTCATGGTTACATCGAACAAAGCGTTAGAAAGCGATTCAGGGCTTCTCAGTGAAAGATCCAAAAAGGATCAATCAACGGATCGTATGATCTGAACTCTTCTGGTTTTGAGAAAGGAGACACCGCTCGCCGCAGCCGAACGACCGAGTGTAGCGAGTTAGTGAGCGAGGAAGCGGAACAGCACAGGGATAACATCAGGCAATTACGCGCAGTGGTTAAAAAGCGAGCATATTGTTTTTATGTGTGGTTGTCTTGGTTCAGAGTGATCTGTCCTCTGGGTTTACGCAAAGTTATCCACAGGTAGTGTGAATTTTTTGTTTTGAGCAAAGTTATCCACAGATTTTTTGTGTTTTTTTGCTTATTAAACTTCTTGTTTTTAAGATCTTAAATGTAGATCGGTAGATCTACTTTAAGATCTTTAACTTACTC	NA	NA	NA	NA
WP_000435064.1|16757_17600_+	replication initiation protein	NA	NA	NA	NA	NA
WP_001074384.1|17603_18050_+	hypothetical protein	NA	NA	NA	NA	NA
WP_024129958.1|18186_18540_+	DNA distortion protein 3	NA	NA	NA	NA	NA
WP_072648941.1|19025_20225_-|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
WP_000957857.1|20234_20423_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000572405.1|22001_22796_+	aminoglycoside O-phosphotransferase APH(3')-IIa	NA	Q75ZG1	Hepacivirus	100.0	9.5e-153
WP_001067858.1|23102_23807_+|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	99.6	1.2e-138
WP_000888203.1|23895_24375_+	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_058914901.1|24444_27597_-	multidrug efflux RND transporter permease subunit OqxB	NA	NA	NA	NA	NA
WP_063865358.1|27620_28796_-	multidrug efflux RND transporter periplasmic adaptor subunit OqxA2	NA	NA	NA	NA	NA
WP_001067855.1|29178_29883_+|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
WP_013023839.1|30934_31411_+	WbuC family cupin fold metalloprotein	NA	NA	NA	NA	NA
WP_015387340.1|31457_32333_-	class A extended-spectrum beta-lactamase CTX-M-55	NA	A0A1B0VBP7	Salmonella_phage	82.1	2.4e-125
WP_001067858.1|32754_33459_-|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	99.6	1.2e-138
>prophage 1
NZ_CP050711	Salmonella enterica subsp. enterica serovar Enteritidis strain SE109 plasmid pSE109-2, complete sequence	59372	0	1905	59372		Stx_converting_phage(100.0%)	2	NA	NA
WP_015059604.1|1304_1466_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000751876.1|1518_1905_-	YgiW/YdeI family stress tolerance OB fold protein	NA	A0A1I9LJU6	Stx_converting_phage	46.9	3.0e-27
>prophage 2
NZ_CP050711	Salmonella enterica subsp. enterica serovar Enteritidis strain SE109 plasmid pSE109-2, complete sequence	59372	11473	12031	59372		Enterobacteria_phage(100.0%)	1	NA	NA
WP_000725064.1|11473_12031_+	Ail/Lom family outer membrane beta-barrel protein	NA	Q9EV15	Enterobacteria_phage	37.4	5.8e-24
>prophage 3
NZ_CP050711	Salmonella enterica subsp. enterica serovar Enteritidis strain SE109 plasmid pSE109-2, complete sequence	59372	29215	36123	59372	transposase	Escherichia_phage(33.33%)	8	NA	NA
WP_000925628.1|29215_29638_+	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A1W6JNS2	Morganella_phage	52.4	2.0e-29
WP_000457542.1|29637_30912_+	Y-family DNA polymerase	NA	F1C5A5	Cronobacter_phage	64.5	3.9e-156
WP_000064277.1|30993_31968_-	ParB/RepB/Spo0J family partition protein	NA	A0A1B0V750	Salmonella_phage	53.5	5.1e-84
WP_000427676.1|31967_33173_-	ParA family protein	NA	A0A077SL49	Escherichia_phage	69.3	1.5e-162
WP_000728919.1|33587_34529_+|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	Q2A0A7	Sodalis_phage	54.7	4.7e-74
WP_000176303.1|34525_35131_-	DUF2913 family protein	NA	NA	NA	NA	NA
WP_001527010.1|35187_35523_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001541564.1|35706_36123_-	hypothetical protein	NA	O64348	Escherichia_phage	42.9	8.2e-07
>prophage 4
NZ_CP050711	Salmonella enterica subsp. enterica serovar Enteritidis strain SE109 plasmid pSE109-2, complete sequence	59372	39671	40232	59372		Ralstonia_phage(100.0%)	1	NA	NA
WP_001240330.1|39671_40232_+	recombinase family protein	NA	A0A1W5LU24	Ralstonia_phage	43.2	1.5e-32
>prophage 5
NZ_CP050711	Salmonella enterica subsp. enterica serovar Enteritidis strain SE109 plasmid pSE109-2, complete sequence	59372	45738	45903	59372		Salmonella_phage(100.0%)	1	NA	NA
WP_001576629.1|45738_45903_+	glycoside hydrolase family protein	NA	A0A0M4R365	Salmonella_phage	63.0	3.3e-12
>prophage 6
NZ_CP050711	Salmonella enterica subsp. enterica serovar Enteritidis strain SE109 plasmid pSE109-2, complete sequence	59372	50845	51678	59372	transposase	Helicobacter_phage(50.0%)	2	NA	NA
WP_000064919.1|50845_51271_-|transposase	IS200/IS605 family transposase	transposase	A0A1S5RHE3	Helicobacter_phage	50.4	3.4e-24
WP_001541541.1|51327_51678_+	helix-turn-helix domain-containing protein	NA	A0A077SLN2	Escherichia_phage	80.5	1.9e-44
>prophage 7
NZ_CP050711	Salmonella enterica subsp. enterica serovar Enteritidis strain SE109 plasmid pSE109-2, complete sequence	59372	54738	55521	59372	integrase	Macacine_betaherpesvirus(100.0%)	1	51013:51024	57721:57732
51013:51024	attL	TATTTACCATCA	NA	NA	NA	NA
WP_000082169.1|54738_55521_-|integrase	phage integrase family protein	integrase	I3WFA4	Macacine_betaherpesvirus	91.1	1.6e-51
WP_000082169.1|54738_55521_-|integrase	phage integrase family protein	integrase	I3WFA4	Macacine_betaherpesvirus	91.1	1.6e-51
57721:57732	attR	TGATGGTAAATA	NA	NA	NA	NA
