The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP050650	Enterococcus faecium strain BIOPOP-3 WT chromosome, complete genome	2633054	1277342	1313906	2633054	plate,transposase,holin,tRNA,integrase	Enterococcus_phage(35.29%)	40	1277460:1277474	1306967:1306981
WP_002313567.1|1277342_1278104_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
1277460:1277474	attL	GACTATTCAGATAAT	NA	NA	NA	NA
WP_002290284.1|1278239_1278587_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_002313569.1|1279428_1281093_+	acetolactate synthase AlsS	NA	NA	NA	NA	NA
WP_002313570.1|1281105_1281816_+	acetolactate decarboxylase	NA	NA	NA	NA	NA
WP_002293167.1|1281945_1282443_+	GAF domain-containing protein	NA	NA	NA	NA	NA
WP_002289617.1|1282628_1282889_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002313574.1|1283808_1284924_+|plate	BppU family phage baseplate upper protein	plate	A0A288TYH2	Enterococcus_phage	41.8	1.3e-22
WP_002313575.1|1285050_1286001_+	hypothetical protein	NA	A0A249XZH9	Enterococcus_phage	45.8	4.2e-30
WP_167779224.1|1286014_1286455_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002314480.1|1286456_1286594_+	XkdX family protein	NA	NA	NA	NA	NA
WP_167779225.1|1286631_1286925_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002314481.1|1286948_1287146_+|holin	holin	holin	A0A0S2MYF6	Enterococcus_phage	87.5	3.5e-24
WP_123856884.1|1287156_1288170_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A1G5SA77	Enterococcus_phage	63.7	4.6e-59
WP_002313578.1|1288202_1289204_-	Abi family protein	NA	M1PS09	Streptococcus_phage	36.9	2.0e-27
WP_002313579.1|1290170_1290473_-	hypothetical protein	NA	NA	NA	NA	NA
WP_081186009.1|1291229_1292003_-	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
WP_002290403.1|1292146_1292497_+	SdpI family protein	NA	NA	NA	NA	NA
WP_002290404.1|1292477_1293194_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	36.2	6.1e-34
WP_002290405.1|1293193_1294642_+	HAMP domain-containing histidine kinase	NA	A0A1V0SGX0	Hokovirus	29.3	1.0e-19
WP_002329381.1|1294714_1295224_-	hypothetical protein	NA	NA	NA	NA	NA
WP_123856784.1|1295213_1295939_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002308821.1|1296110_1298231_-	LTA synthase family protein	NA	W6LM83	Streptococcus_phage	58.4	7.5e-221
WP_167779226.1|1298459_1299638_+	class I SAM-dependent rRNA methyltransferase	NA	W6LLI2	Streptococcus_phage	48.9	1.7e-102
WP_167779227.1|1299653_1300406_+	type I 3-dehydroquinate dehydratase	NA	W6LP76	Streptococcus_phage	35.5	2.9e-26
WP_002290411.1|1300428_1300914_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_167779228.1|1300984_1302238_-	NAD(P)/FAD-dependent oxidoreductase	NA	A0A2H4PQX1	Staphylococcus_phage	55.3	1.7e-23
WP_002308828.1|1302354_1303704_+	NADP-specific glutamate dehydrogenase	NA	NA	NA	NA	NA
WP_002290415.1|1303815_1305162_+	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_002320150.1|1305265_1306489_-|integrase	site-specific integrase	integrase	A0A0P0I3D2	Lactobacillus_phage	43.0	1.5e-80
WP_002320149.1|1306645_1307314_-	hypothetical protein	NA	Q9AZW5	Lactococcus_phage	49.7	1.7e-38
1306967:1306981	attR	ATTATCTGAATAGTC	NA	NA	NA	NA
WP_002320148.1|1307379_1307808_-	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA	NA
WP_002320147.1|1307814_1308186_-	helix-turn-helix transcriptional regulator	NA	O03970	Lactobacillus_phage	42.3	1.1e-21
WP_002308837.1|1308337_1308565_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_167779229.1|1308685_1309180_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002314480.1|1309181_1309319_+	XkdX family protein	NA	NA	NA	NA	NA
WP_002308840.1|1309356_1309650_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002314481.1|1309673_1309871_+|holin	holin	holin	A0A0S2MYF6	Enterococcus_phage	87.5	3.5e-24
WP_167779230.1|1309881_1310895_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A1G5SA77	Enterococcus_phage	63.7	4.6e-59
WP_094850654.1|1311437_1312563_+|transposase	IS3 family transposase	transposase	A0A1P8CWQ3	Bacillus_phage	54.1	2.3e-75
WP_002346735.1|1312946_1313906_-|transposase	IS30-like element IS6770 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP050650	Enterococcus faecium strain BIOPOP-3 WT chromosome, complete genome	2633054	1856848	1865887	2633054		Synechococcus_phage(16.67%)	9	NA	NA
WP_002309479.1|1856848_1857427_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	36.9	1.3e-26
WP_033627216.1|1857423_1858467_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	A0A1D7SE90	Cyanophage	43.9	2.9e-61
WP_073490706.1|1858498_1859938_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	33.1	9.1e-53
WP_167779356.1|1859922_1862145_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	41.3	6.5e-151
WP_002335014.1|1862145_1862817_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
WP_002309490.1|1862818_1863073_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_002313847.1|1863072_1863801_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	E3SPA9	Prochlorococcus_phage	40.9	1.1e-41
WP_002309492.1|1864056_1864434_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002306865.1|1864591_1865887_-	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	33.1	1.0e-18
>prophage 3
NZ_CP050650	Enterococcus faecium strain BIOPOP-3 WT chromosome, complete genome	2633054	2240779	2249741	2633054		Streptococcus_phage(66.67%)	9	NA	NA
WP_002292349.1|2240779_2242969_+	anaerobic ribonucleoside-triphosphate reductase	NA	A0A0C5KKX3	Enterococcus_phage	66.7	6.8e-286
WP_002292348.1|2243773_2244376_+	anaerobic ribonucleoside-triphosphate reductase activating protein	NA	A0A288TZV3	Enterococcus_phage	58.0	4.9e-53
WP_167779420.1|2244429_2245551_-	DNA polymerase IV	NA	NA	NA	NA	NA
WP_002292345.1|2245659_2246532_-	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	60.1	2.1e-89
WP_002288076.1|2246600_2246948_-	DNA replication initiation control protein YabA	NA	M1PFV3	Streptococcus_phage	41.1	5.1e-18
WP_002292343.1|2246940_2247765_-	stage 0 sporulation family protein	NA	NA	NA	NA	NA
WP_002292342.1|2247800_2248739_-	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	33.8	6.1e-34
WP_002292340.1|2248752_2249082_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002292339.1|2249096_2249741_-	dTMP kinase	NA	M1PSC7	Streptococcus_phage	52.6	4.2e-58
>prophage 4
NZ_CP050650	Enterococcus faecium strain BIOPOP-3 WT chromosome, complete genome	2633054	2481306	2568590	2633054	portal,plate,tail,holin,head,terminase,protease,integrase,capsid	Enterococcus_phage(37.33%)	126	2529827:2529886	2568722:2568782
WP_002334690.1|2481306_2481504_-|holin	holin	holin	A0A0S2MYF6	Enterococcus_phage	82.8	8.6e-23
WP_167779455.1|2481521_2481821_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002290625.1|2481858_2481996_-	XkdX family protein	NA	NA	NA	NA	NA
WP_167779456.1|2481997_2482444_-	hypothetical protein	NA	NA	NA	NA	NA
WP_167779457.1|2482455_2484627_-|plate	BppU family phage baseplate upper protein	plate	A0A060AI60	Enterococcus_phage	38.6	6.4e-50
WP_167779458.1|2484642_2485401_-	hypothetical protein	NA	NA	NA	NA	NA
WP_167779459.1|2485414_2487199_-|plate	BppU family phage baseplate upper protein	plate	Q9AZX4	Lactococcus_phage	43.6	8.3e-40
WP_167779460.1|2487173_2490020_-	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A1P8BMB8	Lactococcus_phage	61.3	0.0e+00
WP_094889492.1|2490016_2490784_-|tail	phage tail protein	tail	D7RWD9	Brochothrix_phage	45.1	6.9e-60
WP_167779461.1|2490816_2493639_-|tail	phage tail tape measure protein	tail	Q9G097	Lactococcus_phage	71.0	4.0e-169
WP_002332769.1|2493655_2493916_-	hypothetical protein	NA	A0A2P1JTY6	Anoxybacillus_phage	50.0	1.6e-05
WP_002293018.1|2493996_2494365_-	hypothetical protein	NA	Q77RZ7	Lactococcus_phage	54.8	8.6e-24
WP_002293017.1|2494410_2494923_-|tail	phage major tail protein, TP901-1 family	tail	D7RWD5	Brochothrix_phage	66.3	2.2e-57
WP_167779462.1|2494933_2495326_-|capsid	phage capsid protein	capsid	Q77K20	Lactococcus_phage	75.4	1.8e-48
WP_167779463.1|2495322_2495694_-	HK97 gp10 family phage protein	NA	Q77K21	Lactococcus_phage	51.2	1.2e-28
WP_002321075.1|2495690_2496005_-	hypothetical protein	NA	A0A097BYB2	Enterococcus_phage	56.9	3.2e-27
WP_029485331.1|2496001_2496331_-	hypothetical protein	NA	A0A097BY55	Enterococcus_phage	64.2	1.5e-32
WP_002321720.1|2496346_2496508_-	hypothetical protein	NA	C9E2K1	Enterococcus_phage	66.0	8.9e-10
WP_073490201.1|2496624_2497512_-|capsid	phage major capsid protein	capsid	A0A1B1V000	Enterococcus_phage	77.0	2.3e-131
WP_167779464.1|2497526_2498111_-	DUF4355 domain-containing protein	NA	A0A0S2MYF0	Enterococcus_phage	55.6	2.2e-26
WP_167779465.1|2498249_2498663_-	hypothetical protein	NA	NA	NA	NA	NA
WP_167779466.1|2498667_2499621_-|capsid	minor capsid protein	capsid	A0A1L2JXH2	Streptococcus_phage	61.3	9.7e-104
WP_142432306.1|2499625_2501125_-|portal	phage portal protein	portal	A0A097BY86	Enterococcus_phage	79.1	2.8e-222
WP_167779467.1|2501137_2502436_-|terminase	PBSX family phage terminase large subunit	terminase	A0A1B1UZZ1	Enterococcus_phage	88.4	1.4e-230
WP_002311445.1|2502428_2502884_-|terminase	terminase small subunit	terminase	D7RWC4	Brochothrix_phage	41.4	2.7e-19
WP_167779468.1|2502909_2503134_-	hypothetical protein	NA	NA	NA	NA	NA
WP_047937481.1|2503140_2503353_-	hypothetical protein	NA	D2IZF7	Enterococcus_phage	61.7	1.3e-08
WP_002318889.1|2503405_2504113_-	hypothetical protein	NA	NA	NA	NA	NA
WP_162831952.1|2504783_2504954_+	hypothetical protein	NA	D2IZX0	Enterococcus_phage	88.7	5.0e-19
WP_086283875.1|2505074_2505488_-	hypothetical protein	NA	NA	NA	NA	NA
WP_167779469.1|2505746_2506133_-	hypothetical protein	NA	O34053	Streptococcus_phage	53.4	7.1e-29
WP_010726209.1|2506145_2506559_-	ArpU family phage transcriptional regulator	NA	C9E2P5	Enterococcus_phage	79.6	3.6e-55
WP_167779470.1|2506635_2506932_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080344811.1|2506928_2507423_-	hypothetical protein	NA	A0A0D3MVS9	Staphylococcus_phage	57.0	3.2e-26
WP_047937477.1|2507419_2507722_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002290675.1|2507724_2507886_-	hypothetical protein	NA	NA	NA	NA	NA
WP_167779471.1|2507882_2508185_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002301521.1|2508177_2508342_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002293146.1|2508346_2508616_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002340818.1|2508627_2509374_-	helix-turn-helix domain-containing protein	NA	F8J194	Lactobacillus_virus	59.6	1.9e-30
WP_167779472.1|2509377_2510064_-	hypothetical protein	NA	C9E2N1	Enterococcus_phage	69.5	2.4e-88
WP_002390666.1|2510069_2510816_-	DUF1071 domain-containing protein	NA	A0A1X9IGE5	Lactococcus_phage	47.5	6.4e-42
WP_104889543.1|2510808_2511150_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002301528.1|2511299_2511473_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002305400.1|2511469_2511658_-	hypothetical protein	NA	D2IZW5	Enterococcus_phage	60.3	7.4e-08
WP_167779473.1|2511678_2511963_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002318516.1|2512010_2512310_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002326799.1|2512269_2513025_-	hypothetical protein	NA	A0A1S5SE89	Streptococcus_phage	70.1	1.8e-92
WP_002321800.1|2513039_2513231_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002326798.1|2513522_2513846_+	helix-turn-helix transcriptional regulator	NA	A0A2P0ZLA1	Lactobacillus_phage	40.2	1.3e-15
WP_167779474.1|2513863_2514295_+	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA	NA
WP_010722186.1|2514427_2514937_+	hypothetical protein	NA	A0A0D4DCT6	Staphylococcus_phage	45.6	8.2e-33
WP_167779475.1|2515064_2515766_+	hypothetical protein	NA	NA	NA	NA	NA
WP_029743868.1|2515860_2517009_+|integrase	site-specific integrase	integrase	A0A1B1IMP1	Lactococcus_phage	48.4	5.1e-91
WP_002290607.1|2517097_2518723_-	chaperonin GroEL	NA	A0A219YK78	uncultured_virus	56.8	4.9e-156
WP_002288862.1|2518774_2519059_-	co-chaperone GroES	NA	A0A221S4M3	uncultured_virus	40.2	2.0e-12
WP_002310041.1|2519282_2519945_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_002310040.1|2520021_2521320_-	PTS sugar transporter subunit IIC	NA	NA	NA	NA	NA
WP_167778899.1|2521489_2522119_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_073490565.1|2522219_2523029_-	MBL fold metallo-hydrolase	NA	A0A0C5AJ83	Bacteriophage	33.6	1.2e-33
WP_065772687.1|2523083_2523953_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002310035.1|2523953_2525270_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002310033.1|2525266_2527102_-	cell wall metabolism sensor histidine kinase WalK	NA	W8CYF6	Bacillus_phage	37.7	5.2e-37
WP_002288850.1|2527106_2527811_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	41.6	5.8e-45
WP_073490564.1|2527999_2528860_-	DegV family protein	NA	A0A1X9I5J4	Streptococcus_phage	24.5	4.6e-12
WP_002310031.1|2528849_2529416_-	DUF1836 domain-containing protein	NA	NA	NA	NA	NA
2529827:2529886	attL	ACTCTTAATCAGCGGGTCGCGGGTTCGAGCCCCTCACGGCCCATTGGGTGCCAAACCCAC	NA	NA	NA	NA
WP_167778900.1|2530072_2531092_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A1G5SA77	Enterococcus_phage	66.1	3.2e-60
WP_002319084.1|2531102_2531300_-|holin	holin	holin	A0A0S2MYF6	Enterococcus_phage	87.5	5.9e-24
WP_047937747.1|2531322_2531616_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002290625.1|2531653_2531791_-	XkdX family protein	NA	NA	NA	NA	NA
WP_167778901.1|2532252_2534430_-|plate	BppU family phage baseplate upper protein	plate	A0A060AI60	Enterococcus_phage	46.6	1.3e-74
WP_167778902.1|2534429_2535479_-	hypothetical protein	NA	A0A059T661	Listeria_phage	32.9	3.7e-19
WP_167778903.1|2535478_2536498_-	hypothetical protein	NA	Q9T1A5	Listeria_phage	55.0	6.5e-106
WP_167778904.1|2536506_2537337_-|tail	phage tail family protein	tail	A8ASK7	Listeria_phage	40.8	3.7e-51
WP_167778905.1|2537347_2541343_-	tape measure protein	NA	A0A0M5M3L4	Enterococcus_phage	59.3	1.9e-310
WP_002339947.1|2541342_2541534_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002335843.1|2541557_2541869_-	hypothetical protein	NA	A0A0M4R2F4	Enterococcus_phage	46.7	2.3e-14
WP_167778906.1|2542021_2542591_-|tail	phage tail protein	tail	V5UQL2	Enterococcus_phage	45.7	2.0e-40
WP_167778907.1|2542606_2542978_-	hypothetical protein	NA	A0A060ANH4	Enterococcus_phage	45.3	3.3e-23
WP_002290643.1|2542974_2543370_-	hypothetical protein	NA	A0A0M5M1E5	Enterococcus_phage	41.7	5.8e-18
WP_167778908.1|2543366_2543702_-|head	phage head closure protein	head	A0A249XUC8	Enterococcus_phage	43.2	6.4e-18
WP_167778909.1|2543705_2544032_-|head,tail	phage gp6-like head-tail connector protein	head,tail	NA	NA	NA	NA
WP_167778910.1|2544046_2545252_-|capsid	phage major capsid protein	capsid	E9LUQ3	Lactobacillus_phage	55.4	1.6e-114
WP_081129436.1|2545248_2545926_-|protease	Clp protease ClpP	protease	E9LUQ2	Lactobacillus_phage	51.0	2.9e-49
WP_167778911.1|2545960_2547181_-|portal	phage portal protein	portal	A0A0U3SQF0	Bacillus_phage	38.5	1.2e-61
WP_167778912.1|2547196_2548789_-|terminase	terminase large subunit	terminase	A0A1B1P7R3	Bacillus_phage	52.7	1.1e-173
WP_002290653.1|2548775_2549297_-|terminase	phage terminase small subunit P27 family	terminase	A6M947	Geobacillus_virus	34.2	1.1e-16
WP_002290655.1|2549398_2549563_+	YjzC family protein	NA	A0A0A7RTS6	Clostridium_phage	71.7	1.2e-14
WP_025477451.1|2549719_2550037_-	HNH endonuclease	NA	A0A1B1P8D2	Bacillus_phage	39.8	2.0e-13
WP_167778913.1|2550037_2550556_-	hypothetical protein	NA	NA	NA	NA	NA
WP_167778914.1|2550555_2550783_-	hypothetical protein	NA	NA	NA	NA	NA
WP_048340715.1|2550789_2551002_-	hypothetical protein	NA	D2IZF7	Enterococcus_phage	61.7	1.3e-08
WP_104674691.1|2551626_2551839_+	KTSC domain-containing protein	NA	NA	NA	NA	NA
WP_020944850.1|2552074_2552254_+	YegP family protein	NA	NA	NA	NA	NA
WP_167778915.1|2552246_2552681_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002332450.1|2552940_2553354_-	ArpU family phage transcriptional regulator	NA	C9E2P5	Enterococcus_phage	80.3	5.6e-56
WP_167778916.1|2553429_2553726_-	hypothetical protein	NA	NA	NA	NA	NA
WP_108426006.1|2553722_2553920_-	hypothetical protein	NA	NA	NA	NA	NA
WP_167778917.1|2553916_2554252_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033647184.1|2554248_2554527_-	hypothetical protein	NA	R4JMM4	Bacillus_phage	54.4	1.4e-18
WP_167778918.1|2554523_2555135_-	DUF1642 domain-containing protein	NA	A0A059T7S4	Listeria_phage	42.1	3.8e-16
WP_167778919.1|2555206_2555641_-	hypothetical protein	NA	A0A126GGP5	Streptococcus_phage	39.0	3.4e-11
WP_167778920.1|2555637_2555811_-	hypothetical protein	NA	NA	NA	NA	NA
WP_109114408.1|2555807_2556125_-	DUF1140 family protein	NA	A0A2H4JAZ4	uncultured_Caudovirales_phage	35.4	3.0e-09
WP_167778921.1|2556124_2556430_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002301517.1|2556426_2556588_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002330299.1|2556602_2556962_-	DUF1064 domain-containing protein	NA	A0A1P8BKR1	Lactococcus_phage	48.3	1.8e-18
WP_025478041.1|2556958_2557810_-	ATP-binding protein	NA	A0A0P0I3L9	Lactobacillus_phage	28.7	4.7e-25
WP_167778922.1|2557827_2558658_-	replication protein	NA	C9E2N2	Enterococcus_phage	44.2	8.9e-53
WP_167778923.1|2558660_2559347_-	hypothetical protein	NA	C9E2N1	Enterococcus_phage	69.5	4.1e-88
WP_002286557.1|2559352_2560024_-	DUF1071 domain-containing protein	NA	A0A1B1P7F0	Bacillus_phage	47.4	4.2e-29
WP_167778924.1|2560016_2560358_-	hypothetical protein	NA	NA	NA	NA	NA
WP_167778925.1|2560536_2561262_-	phage regulatory protein	NA	D2IYT0	Enterococcus_phage	35.4	8.7e-28
WP_002323904.1|2561314_2561722_+	hypothetical protein	NA	NA	NA	NA	NA
WP_167778926.1|2561835_2562009_-	hypothetical protein	NA	NA	NA	NA	NA
WP_148780534.1|2561984_2562236_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_167778927.1|2562249_2562441_-	hypothetical protein	NA	Q9T1I7	Lactobacillus_phage	35.5	1.4e-06
WP_002323900.1|2562732_2563053_+	helix-turn-helix transcriptional regulator	NA	A0A182BQC8	Lactococcus_phage	48.2	2.7e-18
WP_167778928.1|2563070_2563493_+	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA	NA
WP_167778929.1|2563576_2564236_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	51.9	1.5e-31
WP_167778930.1|2564343_2564574_+	hypothetical protein	NA	NA	NA	NA	NA
WP_167778931.1|2564637_2564844_+	DUF4177 domain-containing protein	NA	NA	NA	NA	NA
WP_048340699.1|2564952_2565606_+	hypothetical protein	NA	NA	NA	NA	NA
WP_065763641.1|2565738_2566158_+	hypothetical protein	NA	NA	NA	NA	NA
WP_167778932.1|2566269_2567271_+	Abi family protein	NA	A0A2H4JB40	uncultured_Caudovirales_phage	26.7	9.2e-28
WP_137278053.1|2567378_2568590_+|integrase	site-specific integrase	integrase	A0A0B5CTW8	Listeria_phage	30.3	5.5e-35
2568722:2568782	attR	ACTCTTAATCAGCGGGTCGCGGGTTCGAGCCCCTCACGGCCCATTGGGTGCCAAACCCACG	NA	NA	NA	NA
>prophage 1
NZ_CP050651	Enterococcus faecium strain BIOPOP-3 WT plasmid pBIOPOP-3_WT	141022	7176	46233	141022	bacteriocin,protease,integrase,transposase	Bacillus_phage(33.33%)	34	11415:11440	29883:29908
WP_002295743.1|7176_8085_-|transposase	IS982-like element ISEfm1 family transposase	transposase	NA	NA	NA	NA
WP_002290399.1|8451_9750_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
11415:11440	attL	GGGAGCGTCAATAATTTTGTGTAAAT	NA	NA	NA	NA
WP_167779504.1|11465_12635_-|transposase	IS256 family transposase	transposase	NA	NA	NA	NA
WP_002295761.1|14103_14658_+|integrase	tyrosine-type recombinase/integrase	integrase	W8CYP1	Bacillus_phage	46.1	8.6e-36
WP_002295762.1|14720_15806_-	tyrosine recombinase XerS	NA	NA	NA	NA	NA
WP_002295764.1|16127_16361_+	addiction module antitoxin	NA	NA	NA	NA	NA
WP_002307501.1|16357_16765_+	type II toxin-antitoxin system death-on-curing family toxin	NA	A0A0N9SKD8	Staphylococcus_phage	39.8	8.0e-15
WP_002295345.1|17215_17725_-	hypothetical protein	NA	NA	NA	NA	NA
WP_167779505.1|17840_19002_+|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	50.5	8.6e-78
WP_002342366.1|19108_19351_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_002318453.1|19564_19678_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002311027.1|19752_20517_-	iron export ABC transporter permease subunit FetB	NA	NA	NA	NA	NA
WP_002307505.1|20513_21167_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.0	5.8e-23
WP_002307506.1|21250_21673_-	cupin domain-containing protein	NA	Q2I8C5	Bacillus_phage	58.5	2.4e-38
WP_167779506.1|22263_23433_+|transposase	IS256 family transposase	transposase	NA	NA	NA	NA
WP_002293180.1|23491_23788_-|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
WP_100067862.1|23847_24390_-	ATP-binding cassette domain-containing protein	NA	W8CYL7	Bacillus_phage	42.0	2.2e-23
WP_128440552.1|24472_25598_+|transposase	IS3 family transposase	transposase	A0A1P8CWQ3	Bacillus_phage	53.7	8.6e-75
WP_002292906.1|25968_26382_+	Hsp20/alpha crystallin family protein	NA	NA	NA	NA	NA
WP_080001472.1|26518_26779_+	hypothetical protein	NA	NA	NA	NA	NA
WP_025479026.1|26896_27202_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002362389.1|27275_28235_+|transposase	IS30-like element IS6770 family transposase	transposase	W5R8L2	Staphylococcus_phage	36.1	1.2e-37
WP_002329891.1|28671_29856_+|transposase	IS256 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	24.5	2.9e-28
WP_002292444.1|30017_31448_+	hypothetical protein	NA	NA	NA	NA	NA
29883:29908	attR	ATTTACACAAAATTATTGACGCTCCC	NA	NA	NA	NA
WP_167779507.1|31444_32041_-	recombinase family protein	NA	A0A1J1J8Z4	Escherichia_phage	32.1	4.3e-09
WP_167779508.1|32057_33184_-|transposase	IS3 family transposase	transposase	A0A1P8CWQ3	Bacillus_phage	54.1	5.0e-75
WP_167779509.1|33461_35729_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	30.7	1.4e-124
WP_132981516.1|35838_36069_+|transposase	transposase	transposase	Q6J1X3	Lactobacillus_phage	34.6	3.2e-05
WP_167779510.1|36189_36768_-	DUF536 domain-containing protein	NA	NA	NA	NA	NA
WP_167779511.1|36760_37696_-	replication initiation protein	NA	NA	NA	NA	NA
WP_167779512.1|38019_39182_-|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	50.5	9.5e-77
WP_167779526.1|39840_40104_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002314345.1|42904_43096_-	hypothetical protein	NA	NA	NA	NA	NA
WP_167779513.1|44118_46233_-|protease	ATP-dependent Clp protease ATP-binding subunit	protease	K4FB40	Cronobacter_phage	39.0	1.4e-118
