assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_012045365.1_ASM1204536v1	NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	1	2072811-2072904	1	CRISPRCasFinder	no		cas3,DEDDh,csa3,DinG,cas14j	Orphan	TGAGGAAGAAGGTGTTGTTTCTGCTGCA	28	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,DinG,cas14j	NA|349aa|up_4|NZ_CP050648.1_2067272_2068319_-,NA	NA|403aa|up_9|NZ_CP050648.1_2062670_2063879_-	PRK13299, PRK13299, tRNA CCA-pyrophosphorylase; Provisional	NA|111aa|up_8|NZ_CP050648.1_2063987_2064320_-	cd11531, NTP-PPase_BsYpjD, Nucleoside Triphosphate Pyrophosphohydrolase (EC 3	NA|292aa|up_7|NZ_CP050648.1_2064467_2065343_+	COG1284, COG1284, Uncharacterized conserved protein [Function unknown]	NA|194aa|up_6|NZ_CP050648.1_2065424_2066006_-	PRK03636, PRK03636, hypothetical protein; Provisional	NA|420aa|up_5|NZ_CP050648.1_2066011_2067271_-	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein	NA|349aa|up_4|NZ_CP050648.1_2067272_2068319_-	NA	NA|92aa|up_3|NZ_CP050648.1_2068551_2068827_-	cd13831, HU, histone-like DNA-binding protein HU	NA|437aa|up_2|NZ_CP050648.1_2069069_2070380_-	PRK00093, PRK00093, GTP-binding protein Der; Reviewed	NA|410aa|up_1|NZ_CP050648.1_2070561_2071791_-	PRK06676, rpsA, 30S ribosomal protein S1; Reviewed	NA|227aa|up_0|NZ_CP050648.1_2071925_2072606_-	PRK00023, cmk, (d)CMP kinase	NA|468aa|down_0|NZ_CP050648.1_2073355_2074759_-	COG0514, RecQ, Superfamily II DNA helicase [DNA replication, recombination, and repair]	NA|344aa|down_1|NZ_CP050648.1_2074745_2075777_-	COG4955, COG4955, Uncharacterized protein conserved in bacteria [Function unknown]	NA|74aa|down_2|NZ_CP050648.1_2075807_2076029_+	COG1141, Fer, Ferredoxin [Energy production and conversion]	NA|246aa|down_3|NZ_CP050648.1_2076190_2076928_-	pfam12695, Abhydrolase_5, Alpha/beta hydrolase family	NA|447aa|down_4|NZ_CP050648.1_2077081_2078422_-	PRK07205, PRK07205, hypothetical protein; Provisional	NA|508aa|down_5|NZ_CP050648.1_2078658_2080182_-	COG1288, COG1288, Predicted membrane protein [Function unknown]	NA|204aa|down_6|NZ_CP050648.1_2080559_2081171_-	COG3601, COG3601, Predicted membrane protein [Function unknown]	NA|239aa|down_7|NZ_CP050648.1_2081500_2082217_-	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis]	NA|192aa|down_8|NZ_CP050648.1_2082217_2082793_-	PRK00135, scpB, segregation and condensation protein B; Reviewed	NA|254aa|down_9|NZ_CP050648.1_2082776_2083538_-	PRK00104, scpA, segregation and condensation protein A; Reviewed
GCF_012045365.1_ASM1204536v1	NZ_CP050649	Enterococcus faecium strain BIOPOP-3 ALE plasmid pBIOPOP-3_ALE	1	91336-91464	1	CRISPRCasFinder	no	csa3	csa3	Type I-A	GGTATGATTTTCATACCCTCTTGA	24	0	0	NA	NA	NA	2	2	Orphan	cas3,DEDDh,csa3,DinG,cas14j	NA|155aa|up_9|NZ_CP050649.1_79849_80314_-,NA|87aa|up_7|NZ_CP050649.1_82427_82688_-,NA|252aa|up_6|NZ_CP050649.1_82700_83456_-,NA|65aa|up_2|NZ_CP050649.1_88024_88219_-,NA|80aa|up_1|NZ_CP050649.1_88328_88568_-,NA|111aa|up_0|NZ_CP050649.1_89694_90027_-,NA|65aa|down_0|NZ_CP050649.1_93243_93438_+	NA|155aa|up_9|NZ_CP050649.1_79849_80314_-	NA	NA|697aa|up_8|NZ_CP050649.1_80340_82431_-	pfam17998, AgI_II_C2, Cell surface antigen I/II C2 terminal domain	NA|87aa|up_7|NZ_CP050649.1_82427_82688_-	NA	NA|252aa|up_6|NZ_CP050649.1_82700_83456_-	NA	NA|251aa|up_5|NZ_CP050649.1_83471_84224_-	cd05827, Sortase_C, Sortase domain found in class C sortases	NA|659aa|up_4|NZ_CP050649.1_84238_86215_-	pfam16569, GramPos_pilinBB, Gram-positive pilin backbone subunit 2, Cna-B-like domain	NA|224aa|up_3|NZ_CP050649.1_86267_86939_-	cd06165, Sortase_A, Sortase domain found in class A sortases	NA|65aa|up_2|NZ_CP050649.1_88024_88219_-	NA	NA|80aa|up_1|NZ_CP050649.1_88328_88568_-	NA	NA|111aa|up_0|NZ_CP050649.1_89694_90027_-	NA	NA|65aa|down_0|NZ_CP050649.1_93243_93438_+	NA	NA|303aa|down_1|NZ_CP050649.1_93512_94422_-	pfam13612, DDE_Tnp_1_3, Transposase DDE domain	NA|85aa|down_2|NZ_CP050649.1_95230_95485_+	TIGR02609, hypothetical_protein_XAC1195, putative addiction module antidote	NA|106aa|down_3|NZ_CP050649.1_95485_95803_+	pfam05016, ParE_toxin, ParE toxin of type II toxin-antitoxin system, parDE	NA|227aa|down_4|NZ_CP050649.1_96268_96949_+	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|346aa|down_5|NZ_CP050649.1_98186_99224_-	pfam13303, PTS_EIIC_2, Phosphotransferase system, EIIC	NA|313aa|down_6|NZ_CP050649.1_99249_100188_-	PRK06522, PRK06522, 2-dehydropantoate 2-reductase; Reviewed	NA|191aa|down_7|NZ_CP050649.1_101851_102424_+	cd01043, DPS, DPS protein, ferritin-like diiron-binding domain	NA|206aa|down_8|NZ_CP050649.1_102655_103273_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|97aa|down_9|NZ_CP050649.1_103299_103590_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed
