The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	0	54732	2633058	tail,portal,integrase,terminase,protease,head,plate,capsid,holin	Enterococcus_phage(33.33%)	73	12709:12768	51604:51664
WP_002288862.1|1656_1941_-	co-chaperone GroES	NA	A0A221S4M3	uncultured_virus	40.2	2.0e-12
WP_002310041.1|2164_2827_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_002310040.1|2903_4202_-	PTS sugar transporter subunit IIC	NA	NA	NA	NA	NA
WP_167778899.1|4371_5001_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_073490565.1|5101_5911_-	MBL fold metallo-hydrolase	NA	A0A0C5AJ83	Bacteriophage	33.6	1.2e-33
WP_065772687.1|5965_6835_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002310035.1|6835_8152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002310033.1|8148_9984_-	cell wall metabolism sensor histidine kinase WalK	NA	W8CYF6	Bacillus_phage	37.7	5.2e-37
WP_002288850.1|9988_10693_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	41.6	5.8e-45
WP_073490564.1|10881_11742_-	DegV family protein	NA	A0A1X9I5J4	Streptococcus_phage	24.5	4.6e-12
WP_002310031.1|11731_12298_-	DUF1836 domain-containing protein	NA	NA	NA	NA	NA
12709:12768	attL	ACTCTTAATCAGCGGGTCGCGGGTTCGAGCCCCTCACGGCCCATTGGGTGCCAAACCCAC	NA	NA	NA	NA
WP_167778900.1|12954_13974_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A1G5SA77	Enterococcus_phage	66.1	3.2e-60
WP_002319084.1|13984_14182_-|holin	holin	holin	A0A0S2MYF6	Enterococcus_phage	87.5	5.9e-24
WP_047937747.1|14204_14498_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002290625.1|14535_14673_-	XkdX family protein	NA	NA	NA	NA	NA
WP_167778901.1|15134_17312_-|plate	BppU family phage baseplate upper protein	plate	A0A060AI60	Enterococcus_phage	46.6	1.3e-74
WP_167778902.1|17311_18361_-	hypothetical protein	NA	A0A059T661	Listeria_phage	32.9	3.7e-19
WP_167778903.1|18360_19380_-	hypothetical protein	NA	Q9T1A5	Listeria_phage	55.0	6.5e-106
WP_167778904.1|19388_20219_-|tail	phage tail family protein	tail	A8ASK7	Listeria_phage	40.8	3.7e-51
WP_167778905.1|20229_24225_-	tape measure protein	NA	A0A0M5M3L4	Enterococcus_phage	59.3	1.9e-310
WP_002339947.1|24224_24416_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002335843.1|24439_24751_-	hypothetical protein	NA	A0A0M4R2F4	Enterococcus_phage	46.7	2.3e-14
WP_167778906.1|24903_25473_-|tail	phage tail protein	tail	V5UQL2	Enterococcus_phage	45.7	2.0e-40
WP_167778907.1|25488_25860_-	hypothetical protein	NA	A0A060ANH4	Enterococcus_phage	45.3	3.3e-23
WP_002290643.1|25856_26252_-	hypothetical protein	NA	A0A0M5M1E5	Enterococcus_phage	41.7	5.8e-18
WP_167778908.1|26248_26584_-|head	phage head closure protein	head	A0A249XUC8	Enterococcus_phage	43.2	6.4e-18
WP_167778909.1|26587_26914_-|head,tail	phage gp6-like head-tail connector protein	head,tail	NA	NA	NA	NA
WP_167778910.1|26928_28134_-|capsid	phage major capsid protein	capsid	E9LUQ3	Lactobacillus_phage	55.4	1.6e-114
WP_081129436.1|28130_28808_-|protease	Clp protease ClpP	protease	E9LUQ2	Lactobacillus_phage	51.0	2.9e-49
WP_167778911.1|28842_30063_-|portal	phage portal protein	portal	A0A0U3SQF0	Bacillus_phage	38.5	1.2e-61
WP_167778912.1|30078_31671_-|terminase	terminase large subunit	terminase	A0A1B1P7R3	Bacillus_phage	52.7	1.1e-173
WP_002290653.1|31657_32179_-|terminase	phage terminase small subunit P27 family	terminase	A6M947	Geobacillus_virus	34.2	1.1e-16
WP_002290655.1|32280_32445_+	YjzC family protein	NA	A0A0A7RTS6	Clostridium_phage	71.7	1.2e-14
WP_025477451.1|32601_32919_-	HNH endonuclease	NA	A0A1B1P8D2	Bacillus_phage	39.8	2.0e-13
WP_167778913.1|32919_33438_-	hypothetical protein	NA	NA	NA	NA	NA
WP_167778914.1|33437_33665_-	hypothetical protein	NA	NA	NA	NA	NA
WP_048340715.1|33671_33884_-	hypothetical protein	NA	D2IZF7	Enterococcus_phage	61.7	1.3e-08
WP_104674691.1|34508_34721_+	KTSC domain-containing protein	NA	NA	NA	NA	NA
WP_020944850.1|34956_35136_+	YegP family protein	NA	NA	NA	NA	NA
WP_167778915.1|35128_35563_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002332450.1|35822_36236_-	ArpU family phage transcriptional regulator	NA	C9E2P5	Enterococcus_phage	80.3	5.6e-56
WP_167778916.1|36311_36608_-	hypothetical protein	NA	NA	NA	NA	NA
WP_108426006.1|36604_36802_-	hypothetical protein	NA	NA	NA	NA	NA
WP_167778917.1|36798_37134_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033647184.1|37130_37409_-	hypothetical protein	NA	R4JMM4	Bacillus_phage	54.4	1.4e-18
WP_167778918.1|37405_38017_-	DUF1642 domain-containing protein	NA	A0A059T7S4	Listeria_phage	42.1	3.8e-16
WP_167778919.1|38088_38523_-	hypothetical protein	NA	A0A126GGP5	Streptococcus_phage	39.0	3.4e-11
WP_167778920.1|38519_38693_-	hypothetical protein	NA	NA	NA	NA	NA
WP_109114408.1|38689_39007_-	DUF1140 family protein	NA	A0A2H4JAZ4	uncultured_Caudovirales_phage	35.4	3.0e-09
WP_167778921.1|39006_39312_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002301517.1|39308_39470_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002330299.1|39484_39844_-	DUF1064 domain-containing protein	NA	A0A1P8BKR1	Lactococcus_phage	48.3	1.8e-18
WP_025478041.1|39840_40692_-	ATP-binding protein	NA	A0A0P0I3L9	Lactobacillus_phage	28.7	4.7e-25
WP_167778922.1|40709_41540_-	replication protein	NA	C9E2N2	Enterococcus_phage	44.2	8.9e-53
WP_167778923.1|41542_42229_-	hypothetical protein	NA	C9E2N1	Enterococcus_phage	69.5	4.1e-88
WP_002286557.1|42234_42906_-	DUF1071 domain-containing protein	NA	A0A1B1P7F0	Bacillus_phage	47.4	4.2e-29
WP_167778924.1|42898_43240_-	hypothetical protein	NA	NA	NA	NA	NA
WP_167778925.1|43418_44144_-	phage regulatory protein	NA	D2IYT0	Enterococcus_phage	35.4	8.7e-28
WP_002323904.1|44196_44604_+	hypothetical protein	NA	NA	NA	NA	NA
WP_167778926.1|44717_44891_-	hypothetical protein	NA	NA	NA	NA	NA
WP_148780534.1|44866_45118_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_167778927.1|45131_45323_-	hypothetical protein	NA	Q9T1I7	Lactobacillus_phage	35.5	1.4e-06
WP_002323900.1|45614_45935_+	helix-turn-helix transcriptional regulator	NA	A0A182BQC8	Lactococcus_phage	48.2	2.7e-18
WP_167778928.1|45952_46375_+	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA	NA
WP_167778929.1|46458_47118_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	51.9	1.5e-31
WP_167778930.1|47225_47456_+	hypothetical protein	NA	NA	NA	NA	NA
WP_167778931.1|47519_47726_+	DUF4177 domain-containing protein	NA	NA	NA	NA	NA
WP_048340699.1|47834_48488_+	hypothetical protein	NA	NA	NA	NA	NA
WP_065763641.1|48620_49040_+	hypothetical protein	NA	NA	NA	NA	NA
WP_167778932.1|49151_50153_+	Abi family protein	NA	A0A2H4JB40	uncultured_Caudovirales_phage	26.7	9.2e-28
WP_137278053.1|50260_51472_+|integrase	site-specific integrase	integrase	A0A0B5CTW8	Listeria_phage	30.3	5.5e-35
WP_123830807.1|51818_53546_-	ABC transporter permease/substrate binding protein	NA	NA	NA	NA	NA
51604:51664	attR	ACTCTTAATCAGCGGGTCGCGGGTTCGAGCCCCTCACGGCCCATTGGGTGCCAAACCCACG	NA	NA	NA	NA
WP_002310029.1|53538_54732_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	37.0	8.9e-30
>prophage 2
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	58796	62354	2633058		Enterococcus_phage(66.67%)	3	NA	NA
WP_002287795.1|58796_59021_+	glutaredoxin-like protein NrdH	NA	A0A0M7REK7	Lactobacillus_phage	42.7	1.7e-11
WP_167778933.1|59179_61339_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A8E2R1	Enterococcus_phage	63.6	2.4e-267
WP_002287792.1|61388_62354_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A096XT60	Enterococcus_phage	70.4	3.4e-128
>prophage 3
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	80909	84349	2633058		Bacillus_virus(50.0%)	3	NA	NA
WP_002290559.1|80909_81623_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	43.7	8.5e-20
WP_002287787.1|81881_82583_-	glucosamine-6-phosphate deaminase	NA	NA	NA	NA	NA
WP_002320501.1|82816_84349_+	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	28.3	1.9e-45
>prophage 4
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	97229	99800	2633058		Bacillus_phage(100.0%)	1	NA	NA
WP_002314140.1|97229_99800_-	ATP-dependent RecD-like DNA helicase	NA	A0A218KCE8	Bacillus_phage	28.9	4.2e-61
>prophage 5
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	114343	117538	2633058		Gordonia_phage(100.0%)	1	NA	NA
WP_002335221.1|114343_117538_-	DEAD/DEAH box helicase family protein	NA	A0A2L1IWL4	Gordonia_phage	28.1	1.2e-36
>prophage 6
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	123832	130042	2633058	tRNA	Pseudomonas_phage(33.33%)	4	NA	NA
WP_002335224.1|123832_125716_-	acetyltransferase	NA	B5WZU0	Pseudomonas_phage	29.6	1.0e-27
WP_002291388.1|125982_126858_-	YitT family protein	NA	NA	NA	NA	NA
WP_167778947.1|126966_128736_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SJ84	Klosneuvirus	24.9	1.1e-12
WP_002291383.1|128749_130042_-|tRNA	histidine--tRNA ligase	tRNA	A0A2I2L577	Orpheovirus	26.0	8.5e-26
>prophage 7
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	133359	135573	2633058		Orpheovirus(100.0%)	1	NA	NA
WP_065772716.1|133359_135573_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A2I2L310	Orpheovirus	35.8	2.9e-10
>prophage 8
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	138792	140079	2633058		Bacillus_phage(100.0%)	1	NA	NA
WP_002314154.1|138792_140079_+	replication-associated recombination protein A	NA	A0A127AWE7	Bacillus_phage	49.8	3.6e-109
>prophage 9
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	152473	153783	2633058		Staphylococcus_phage(50.0%)	2	NA	NA
WP_002309930.1|152473_153211_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.7	1.4e-25
WP_002309928.1|153348_153783_+	HIT family protein	NA	D7NW73	Streptomyces_phage	34.1	9.2e-09
>prophage 10
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	183540	184533	2633058		Enterobacteria_phage(100.0%)	1	NA	NA
WP_002310850.1|183540_184533_+	LacI family transcriptional regulator	NA	C6ZCU4	Enterobacteria_phage	29.7	1.7e-26
>prophage 11
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	190629	192999	2633058		Bacillus_phage(50.0%)	2	NA	NA
WP_167778960.1|190629_192384_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.7	1.3e-40
WP_002285994.1|192657_192999_-	YlbF family regulator	NA	A0A1X9I5Y8	Streptococcus_phage	34.9	1.3e-10
>prophage 12
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	225243	236289	2633058	tRNA	Staphylococcus_phage(50.0%)	7	NA	NA
WP_002310817.1|225243_227658_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	72.7	0.0e+00
WP_167778971.1|228078_230052_-	LysM peptidoglycan-binding domain-containing protein	NA	A0A0A7NU10	Lactobacillus_phage	34.1	9.3e-16
WP_104760376.1|230421_231078_+	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_002314449.1|231077_232034_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	56.6	1.6e-42
WP_002320153.1|232033_232600_+	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	43.3	7.4e-35
WP_002292737.1|232804_234574_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	29.4	9.1e-55
WP_167778972.1|234576_236289_-	ABC transporter ATP-binding protein	NA	F2Y302	Organic_Lake_phycodnavirus	25.4	8.9e-15
>prophage 13
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	239612	240806	2633058		Staphylococcus_phage(100.0%)	1	NA	NA
WP_002292731.1|239612_240806_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	71.2	1.6e-148
>prophage 14
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	249001	256909	2633058	protease,tRNA	Tupanvirus(25.0%)	6	NA	NA
WP_167778974.1|249001_250498_-|tRNA	lysine--tRNA ligase	tRNA	A0A2K9KZX5	Tupanvirus	40.9	1.1e-90
WP_002373642.1|250608_251613_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_002310401.1|251613_252501_-	Hsp33 family molecular chaperone HslO	NA	NA	NA	NA	NA
WP_002310402.1|252717_254829_-|protease	ATP-dependent zinc metalloprotease FtsH	protease	C7U047	Ostreococcus_tauri_virus	50.3	2.0e-109
WP_002310403.1|254918_255464_-	hypoxanthine phosphoribosyltransferase	NA	A0A1V0SEQ1	Hokovirus	25.3	4.1e-06
WP_167778975.1|255463_256909_-|tRNA	tRNA lysidine(34) synthetase TilS	tRNA	E3T4I1	Cafeteria_roenbergensis_virus	25.1	1.2e-07
>prophage 15
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	270297	271854	2633058		Mycobacterium_phage(100.0%)	1	NA	NA
WP_167778979.1|270297_271854_-	hypothetical protein	NA	B5LJD6	Mycobacterium_phage	51.5	1.0e-17
>prophage 16
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	276116	285316	2633058	tRNA	Indivirus(25.0%)	8	NA	NA
WP_002344843.1|276116_278186_-	Stk1 family PASTA domain-containing Ser/Thr kinase	NA	A0A1V0SDC3	Indivirus	27.9	1.0e-20
WP_002310425.1|278182_278923_-	Stp1/IreP family PP2C-type Ser/Thr phosphatase	NA	NA	NA	NA	NA
WP_002314334.1|278935_280294_-	16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB	NA	NA	NA	NA	NA
WP_002344841.1|280293_281232_-|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	31.0	1.4e-09
WP_002310429.1|281224_281716_-	peptide deformylase	NA	E3SLL2	Synechococcus_phage	42.4	1.4e-16
WP_002310430.1|281730_284139_-	primosomal protein N'	NA	NA	NA	NA	NA
WP_002287365.1|284391_284697_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_002293062.1|284701_285316_-	guanylate kinase	NA	A0A143DIC6	Abalone_herpesvirus	36.7	2.2e-24
>prophage 17
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	290635	296009	2633058		Hokovirus(25.0%)	5	NA	NA
WP_002287347.1|290635_291607_-	ribose-phosphate diphosphokinase	NA	A0A1V0SHF7	Hokovirus	32.6	4.9e-42
WP_002298200.1|291700_293074_-	bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	NA	A0A2K9L277	Tupanvirus	35.8	3.4e-33
WP_002287345.1|293546_294365_-	pur operon repressor	NA	A0A1V0SKE5	Klosneuvirus	27.1	2.1e-06
WP_002287344.1|294531_295356_-	metal ABC transporter permease	NA	NA	NA	NA	NA
WP_002287343.1|295328_296009_-	metal ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	30.4	5.1e-14
>prophage 18
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	300933	304840	2633058		Streptococcus_phage(50.0%)	3	NA	NA
WP_167778983.1|300933_301740_+	pyrroline-5-carboxylate reductase	NA	A0A1X9I6T5	Streptococcus_phage	33.7	3.8e-32
WP_002287336.1|301818_303375_-	ribonuclease Y	NA	NA	NA	NA	NA
WP_002310440.1|303793_304840_-	recombinase RecA	NA	A0A0S2MVG1	Bacillus_phage	68.6	4.5e-126
>prophage 19
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	308437	310985	2633058		Bodo_saltans_virus(50.0%)	2	NA	NA
WP_167778984.1|308437_309724_-	insulinase family protein	NA	A0A2H4UVM3	Bodo_saltans_virus	28.0	1.8e-07
WP_002310447.1|309716_310985_-	insulinase family protein	NA	A0A1X9I714	Streptococcus_phage	37.6	3.1e-65
>prophage 20
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	315089	316502	2633058	tRNA	Catovirus(100.0%)	1	NA	NA
WP_002310455.1|315089_316502_-|tRNA	cysteine--tRNA ligase	tRNA	A0A1V0SAQ2	Catovirus	31.5	2.0e-52
>prophage 21
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	321608	324416	2633058		Streptococcus_phage(66.67%)	3	NA	NA
WP_002345653.1|321608_322136_-	dUTP diphosphatase	NA	J9PV85	Bacillus_phage	55.7	4.8e-44
WP_002344833.1|322365_323172_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	40.4	5.1e-45
WP_002310461.1|323168_324416_+	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	57.7	2.1e-114
>prophage 22
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	328302	329781	2633058		Streptococcus_phage(100.0%)	1	NA	NA
WP_167778986.1|328302_329781_-	Msr family ABC-F type ribosomal protection protein	NA	A0A1B0RXA0	Streptococcus_phage	42.0	4.1e-85
>prophage 23
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	353787	354120	2633058		Streptococcus_phage(100.0%)	1	NA	NA
WP_002320458.1|353787_354120_-	DUF4176 domain-containing protein	NA	A0A1X9I6T6	Streptococcus_phage	52.7	4.5e-24
>prophage 24
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	358466	362891	2633058		Mycobacterium_phage(100.0%)	1	NA	NA
WP_167779480.1|358466_362891_-	type VII secretion protein EssC	NA	V5UPA0	Mycobacterium_phage	24.1	6.7e-38
>prophage 25
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	369337	370657	2633058	transposase	Streptococcus_phage(100.0%)	1	NA	NA
WP_104886029.1|369337_370657_-|transposase	IS1380 family transposase	transposase	A0A1X9I6F6	Streptococcus_phage	83.1	5.7e-211
>prophage 26
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	376869	379689	2633058		Anomala_cuprea_entomopoxvirus(50.0%)	2	NA	NA
WP_002310523.1|376869_377805_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	35.1	8.0e-26
WP_167778999.1|378120_379689_-	DNA mismatch repair protein MutS	NA	A0A0N9R0S5	Chrysochromulina_ericina_virus	27.4	1.5e-16
>prophage 27
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	391107	401870	2633058		Phaeocystis_globosa_virus(33.33%)	5	NA	NA
WP_167779003.1|391107_394752_-	DNA-directed RNA polymerase subunit beta'	NA	R4TQM7	Phaeocystis_globosa_virus	24.8	1.4e-62
WP_002310550.1|394830_398448_-	DNA-directed RNA polymerase subunit beta	NA	A0A1B1ISA9	uncultured_Mediterranean_phage	24.7	1.5e-48
WP_167779004.1|399175_400144_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_002318799.1|400161_401067_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_002318798.1|401063_401870_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	25.1	2.2e-08
>prophage 28
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	405081	413263	2633058	transposase,protease	Bacillus_phage(33.33%)	5	NA	NA
WP_094850654.1|405081_406208_-|transposase	IS3 family transposase	transposase	A0A1P8CWQ3	Bacillus_phage	54.1	2.3e-75
WP_002318792.1|406887_408234_-	glutathione-disulfide reductase	NA	NA	NA	NA	NA
WP_033582018.1|408367_409609_-	U32 family peptidase	NA	Q6DW11	Phage_TP	32.9	7.3e-43
WP_002318793.1|409626_410550_-	U32 family peptidase	NA	NA	NA	NA	NA
WP_002318794.1|410770_413263_-|protease	ATP-dependent Clp protease ATP-binding subunit	protease	A0A0A8J958	Klebsiella_phage	38.3	4.0e-125
>prophage 29
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	420478	430071	2633058	tRNA	Bacillus_phage(33.33%)	9	NA	NA
WP_002295268.1|420478_421168_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	38.1	1.8e-38
WP_002295267.1|421154_422363_+	HAMP domain-containing histidine kinase	NA	W8CYF6	Bacillus_phage	27.3	2.7e-26
WP_002307286.1|422656_423928_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	53.4	1.5e-88
WP_002318785.1|424333_425818_-	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.8	7.3e-98
WP_002299780.1|426320_427016_-	DUF1129 domain-containing protein	NA	NA	NA	NA	NA
WP_002318786.1|427105_428206_-	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_002293106.1|428214_428406_-	DUF951 domain-containing protein	NA	NA	NA	NA	NA
WP_002288806.1|428426_429317_-	ParB/RepB/Spo0J family partition protein	NA	I3NLC2	Bifidobacterium_phage	33.5	1.1e-16
WP_002293108.1|429303_430071_-	ParA family protein	NA	Q8JL10	Natrialba_phage	33.2	8.3e-29
>prophage 30
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	439451	447695	2633058		Bacillus_virus(50.0%)	7	NA	NA
WP_002293124.1|439451_440582_+	DNA polymerase III subunit beta	NA	A0A0A8IL17	Aurantimonas_phage	25.3	4.2e-29
WP_002293125.1|440809_441052_+	S4 domain-containing protein YaaA	NA	NA	NA	NA	NA
WP_002293126.1|441038_442163_+	DNA replication/repair protein RecF	NA	NA	NA	NA	NA
WP_002336166.1|442159_444106_+	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	43.6	2.0e-140
WP_104885922.1|444125_446597_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.1	5.5e-98
WP_002293129.1|446832_447132_+	30S ribosomal protein S6	NA	NA	NA	NA	NA
WP_002288368.1|447182_447695_+	single-stranded DNA-binding protein	NA	Q938M7	Temperate_phage	60.0	1.3e-46
>prophage 31
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	450805	459097	2633058	transposase	Streptococcus_phage(40.0%)	5	NA	NA
WP_002288373.1|450805_452173_+	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	54.8	3.0e-130
WP_104886029.1|452917_454237_-|transposase	IS1380 family transposase	transposase	A0A1X9I6F6	Streptococcus_phage	83.1	5.7e-211
WP_002309895.1|454523_455816_+	adenylosuccinate synthase	NA	G5CQQ4	Megavirus	35.8	2.4e-68
WP_002316532.1|456482_457346_+	DegV family protein	NA	A0A0N9SI50	Staphylococcus_phage	29.9	2.0e-10
WP_002319326.1|457474_459097_-	ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	26.5	3.4e-48
>prophage 32
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	466016	469650	2633058	transposase	unidentified_phage(50.0%)	4	NA	NA
WP_002301399.1|466016_466976_+|transposase	IS30 family transposase	transposase	H7BW61	unidentified_phage	26.8	2.2e-10
WP_002319332.1|467092_467314_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_002288644.1|467889_468006_+	putative metal homeostasis protein	NA	NA	NA	NA	NA
WP_002298578.1|468084_469650_-	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	30.6	3.5e-18
>prophage 33
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	472898	478248	2633058		Geobacillus_virus(33.33%)	5	NA	NA
WP_002291105.1|472898_474200_+	pyrimidine-nucleoside phosphorylase	NA	A0A0H3UZD4	Geobacillus_virus	58.5	1.8e-124
WP_167779006.1|474246_474909_+	deoxyribose-phosphate aldolase	NA	NA	NA	NA	NA
WP_002291109.1|474927_475326_+	cytidine deaminase	NA	NA	NA	NA	NA
WP_002319336.1|475391_476474_+	BMP family ABC transporter substrate-binding protein	NA	A0A0A7DN02	Lactobacillus_phage	41.1	1.2e-57
WP_002319337.1|476685_478248_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	32.4	1.7e-20
>prophage 34
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	481619	482438	2633058		Grouper_iridovirus(100.0%)	1	NA	NA
WP_002319339.1|481619_482438_+	purine-nucleoside phosphorylase	NA	Q5YBA4	Grouper_iridovirus	45.8	1.2e-57
>prophage 35
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	485834	492058	2633058		Aeromonas_phage(33.33%)	6	NA	NA
WP_002315503.1|485834_486416_-	recombinase family protein	NA	A0A219Y9V9	Aeromonas_phage	33.5	1.1e-17
WP_002309842.1|486548_487232_-	ribose-5-phosphate isomerase RpiA	NA	NA	NA	NA	NA
WP_002294318.1|487550_487964_+	30S ribosomal protein S12	NA	NA	NA	NA	NA
WP_002290440.1|488047_488518_+	30S ribosomal protein S7	NA	NA	NA	NA	NA
WP_002309841.1|488611_490699_+	elongation factor G	NA	E4ZFJ7	Streptococcus_phage	28.9	1.1e-64
WP_002290442.1|490870_492058_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	24.4	6.4e-12
>prophage 36
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	506830	508515	2633058		Planktothrix_phage(50.0%)	2	NA	NA
WP_167779007.1|506830_507670_+	energy-coupling factor ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.3	2.2e-19
WP_002290457.1|507645_508515_+	energy-coupling factor ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	2.9e-14
>prophage 37
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	516159	521826	2633058		uncultured_Caudovirales_phage(33.33%)	5	NA	NA
WP_104869341.1|516159_518196_+	ATP-dependent DNA helicase RecG	NA	A0A2H4JBQ0	uncultured_Caudovirales_phage	22.0	1.8e-06
WP_002290467.1|518244_519246_+	phosphate acyltransferase PlsX	NA	NA	NA	NA	NA
WP_002290470.1|519366_519609_+	acyl carrier protein	NA	NA	NA	NA	NA
WP_002309832.1|519876_520881_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.6	3.9e-18
WP_002309831.1|520881_521826_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.1	3.9e-20
>prophage 38
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	529175	529862	2633058		Megavirus(100.0%)	1	NA	NA
WP_002287896.1|529175_529862_+	ribonuclease III	NA	K7YH73	Megavirus	32.3	9.1e-27
>prophage 39
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	538434	541089	2633058		uncultured_Caudovirales_phage(50.0%)	3	NA	NA
WP_002309823.1|538434_539385_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4IY97	uncultured_Caudovirales_phage	40.5	5.6e-67
WP_002309822.1|539377_540337_+	iron chelate uptake ABC transporter family permease subunit	NA	NA	NA	NA	NA
WP_167779009.1|540333_541089_+	ATP-binding cassette domain-containing protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	27.4	5.7e-14
>prophage 40
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	547748	549152	2633058		Pandoravirus(100.0%)	1	NA	NA
WP_002312373.1|547748_549152_+	6-phospho-beta-galactosidase	NA	A0A0B5JD41	Pandoravirus	29.6	3.5e-49
>prophage 41
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	558523	559258	2633058		Paramecium_bursaria_Chlorella_virus(100.0%)	1	NA	NA
WP_002290500.1|558523_559258_-	aquaporin family protein	NA	M1HWZ0	Paramecium_bursaria_Chlorella_virus	31.4	1.4e-25
>prophage 42
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	562293	564116	2633058		Bacillus_phage(33.33%)	3	NA	NA
WP_002290506.1|562293_562515_+	DUF2829 domain-containing protein	NA	A0A0S2MV93	Bacillus_phage	33.3	1.1e-05
WP_002290507.1|562511_563273_+	3-oxoacyl-ACP reductase	NA	F2NZ40	Diadromus_pulchellus_ascovirus	32.1	1.2e-16
WP_167779015.1|563606_564116_+	QueT transporter family protein	NA	E7DN70	Pneumococcus_phage	31.3	2.2e-09
>prophage 43
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	569631	580301	2633058		Catovirus(25.0%)	8	NA	NA
WP_002290522.1|569631_572277_+	DNA mismatch repair protein MutS	NA	A0A1V0SC35	Catovirus	26.1	8.0e-39
WP_002336151.1|572294_574403_+	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	40.3	1.2e-56
WP_002290524.1|574423_574984_+	septum formation inhibitor Maf	NA	NA	NA	NA	NA
WP_167779016.1|575068_577057_-	PTS system trehalose-specific EIIBC component	NA	NA	NA	NA	NA
WP_002290526.1|577279_577993_+	trehalose operon repressor	NA	A0A291LID1	Streptomyces_phage	39.7	1.2e-05
WP_002309788.1|578069_578516_+	peptide-methionine (R)-S-oxide reductase MsrB	NA	NA	NA	NA	NA
WP_002290528.1|578684_579287_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_002290529.1|579299_580301_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.8	1.8e-07
>prophage 44
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	588908	589649	2633058		Planktothrix_phage(100.0%)	1	NA	NA
WP_002293446.1|588908_589649_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	1.2e-29
>prophage 45
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	596158	596722	2633058		Synechococcus_phage(100.0%)	1	NA	NA
WP_002293455.1|596158_596722_-	peptide deformylase	NA	E3SLL2	Synechococcus_phage	37.1	2.3e-12
>prophage 46
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	600597	602589	2633058		Acanthocystis_turfacea_Chlorella_virus(100.0%)	1	NA	NA
WP_167779020.1|600597_602589_+	potassium transporter Kup	NA	M1HZV6	Acanthocystis_turfacea_Chlorella_virus	34.1	2.2e-65
>prophage 47
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	608878	615157	2633058		Catovirus(33.33%)	6	NA	NA
WP_002289751.1|608878_609508_+	uridine kinase	NA	A0A1V0SAA3	Catovirus	40.2	3.1e-34
WP_002293431.1|609969_610572_+	TVP38/TMEM64 family protein	NA	M1Q152	Streptococcus_phage	30.6	2.1e-19
WP_002293430.1|610593_611082_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_167779023.1|611404_612778_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002293427.1|612761_613229_+	YaiI/YqxD family protein	NA	NA	NA	NA	NA
WP_002336146.1|613411_615157_-	AarF/ABC1/UbiB kinase family protein	NA	M4R0M8	Ostreococcus_lucimarinus_virus	28.0	2.8e-40
>prophage 48
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	618255	621757	2633058		Diachasmimorpha_longicaudata_entomopoxvirus(50.0%)	4	NA	NA
WP_002293419.1|618255_619767_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	36.2	1.1e-61
WP_002293418.1|619896_620247_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_002329725.1|620262_621384_+	alanine racemase	NA	NA	NA	NA	NA
WP_002289874.1|621394_621757_+	type II toxin-antitoxin system PemK/MazF family toxin	NA	A0A291I9M9	Lactobacillus_phage	37.8	7.6e-09
>prophage 49
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	630917	639134	2633058	tRNA,holin	Mycoplasma_phage(33.33%)	5	NA	NA
WP_002329721.1|630917_632093_-|holin	betaine/proline/choline family ABC transporter ATP-binding protein	holin	Q6GZ03	Mycoplasma_phage	32.9	1.0e-17
WP_167779024.1|632310_633342_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_167779025.1|634207_636847_+	cation-translocating P-type ATPase	NA	A0A1J0FA34	Only_Syngen_Nebraska_virus	30.5	1.6e-84
WP_002293400.1|637074_637773_-	DUF975 family protein	NA	NA	NA	NA	NA
WP_002294183.1|637988_639134_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	40.9	2.5e-82
>prophage 50
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	652015	655136	2633058		Lactobacillus_virus(50.0%)	4	NA	NA
WP_002315605.1|652015_652669_+	deoxynucleoside kinase	NA	C1KFI3	Lactobacillus_virus	52.3	1.1e-58
WP_002313988.1|652752_653658_+	magnesium transporter CorA family protein	NA	NA	NA	NA	NA
WP_167779031.1|653659_654292_-	pentapeptide repeat-containing protein	NA	NA	NA	NA	NA
WP_167779032.1|654611_655136_+	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	33.3	1.4e-14
>prophage 51
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	679356	680646	2633058		uncultured_Mediterranean_phage(100.0%)	1	NA	NA
WP_002290101.1|679356_680646_-	PDZ domain-containing protein	NA	A0A1B1IT49	uncultured_Mediterranean_phage	30.2	5.7e-22
>prophage 52
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	691405	691759	2633058		Leptospira_phage(100.0%)	1	NA	NA
WP_167779038.1|691405_691759_-	IS66 family insertion sequence element accessory protein TnpB	NA	S5VXZ8	Leptospira_phage	44.2	4.8e-16
>prophage 53
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	698606	705702	2633058		Anoxybacillus_phage(40.0%)	6	NA	NA
WP_167779041.1|698606_700022_+	peptidase	NA	A0A1B2AQ05	Phage_Wrath	24.6	2.5e-23
WP_002334089.1|700452_700692_+	hypothetical protein	NA	NA	NA	NA	NA
WP_113844549.1|700707_702081_+	recombinase family protein	NA	A0A2P1JU08	Anoxybacillus_phage	24.5	7.9e-14
WP_113844550.1|702084_703722_+	recombinase family protein	NA	A0A2P1JU08	Anoxybacillus_phage	27.9	3.1e-41
WP_100970585.1|703914_704811_+	site-specific DNA-methyltransferase	NA	M1PWW9	Cyanophage	37.6	9.6e-45
WP_100970613.1|704913_705702_+	site-specific DNA-methyltransferase	NA	A0A0N9PB81	Sulfolobus_monocaudavirus	46.8	1.8e-15
>prophage 54
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	716936	718415	2633058		Bacillus_phage(100.0%)	1	NA	NA
WP_002341063.1|716936_718415_-	sucrose-6-phosphate hydrolase	NA	S6ATV4	Bacillus_phage	24.3	2.6e-18
>prophage 55
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	746770	747904	2633058		Synechococcus_phage(100.0%)	1	NA	NA
WP_002329664.1|746770_747904_-	alcohol dehydrogenase catalytic domain-containing protein	NA	E3SJ82	Synechococcus_phage	24.2	1.2e-12
>prophage 56
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	759591	762144	2633058		Acanthocystis_turfacea_Chlorella_virus(100.0%)	1	NA	NA
WP_002329658.1|759591_762144_+	HAD-IC family P-type ATPase	NA	M1I547	Acanthocystis_turfacea_Chlorella_virus	28.6	3.8e-62
>prophage 57
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	773860	774202	2633058		Streptococcus_phage(100.0%)	1	NA	NA
WP_002341043.1|773860_774202_+	type II toxin-antitoxin system PemK/MazF family toxin	NA	A0A1S5SEX8	Streptococcus_phage	42.6	5.0e-18
>prophage 58
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	784313	785627	2633058		Moraxella_phage(100.0%)	1	NA	NA
WP_002292548.1|784313_785627_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	32.1	4.4e-46
>prophage 59
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	796631	799582	2633058		Acanthocystis_turfacea_Chlorella_virus(50.0%)	2	NA	NA
WP_002329636.1|796631_797348_+	aquaporin family protein	NA	M1HVL5	Acanthocystis_turfacea_Chlorella_virus	36.5	7.7e-29
WP_002341029.1|797653_799582_+	DNA mismatch repair protein MutS2	NA	F2Y0V3	Organic_Lake_phycodnavirus	24.6	5.1e-19
>prophage 60
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	818122	823055	2633058	tRNA	Staphylococcus_phage(50.0%)	4	NA	NA
WP_024635417.1|818122_819004_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	31.4	2.5e-21
WP_167779067.1|819256_819856_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_167779485.1|819925_821227_-	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_167779068.1|821798_823055_+|tRNA	tyrosine--tRNA ligase	tRNA	A0A1L2CUL7	Pectobacterium_phage	42.7	5.3e-81
>prophage 61
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	835081	840458	2633058		Acanthocystis_turfacea_Chlorella_virus(50.0%)	3	NA	NA
WP_123837601.1|835081_835747_-	beta-phosphoglucomutase	NA	M1I5S4	Acanthocystis_turfacea_Chlorella_virus	28.3	4.0e-11
WP_167779074.1|835739_838034_-	glycoside hydrolase family 65 protein	NA	NA	NA	NA	NA
WP_167779075.1|838292_840458_+	PTS transporter subunit EIIC	NA	A0A2I7SAJ6	Vibrio_phage	32.7	7.3e-06
>prophage 62
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	854307	858500	2633058		Bacillus_phage(66.67%)	3	NA	NA
WP_167779085.1|854307_856644_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.4	4.0e-34
WP_167779086.1|856785_857454_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	45.9	3.7e-49
WP_167779087.1|857456_858500_+	HAMP domain-containing histidine kinase	NA	W8CYF6	Bacillus_phage	38.2	6.6e-53
>prophage 63
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	864512	865265	2633058		Planktothrix_phage(100.0%)	1	NA	NA
WP_167779091.1|864512_865265_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	38.1	2.4e-33
>prophage 64
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	868411	870568	2633058		Clostridium_phage(100.0%)	1	NA	NA
WP_002310775.1|868411_870568_-	hypothetical protein	NA	A0A0A8WF62	Clostridium_phage	45.6	2.6e-19
>prophage 65
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	875631	876333	2633058		Planktothrix_phage(100.0%)	1	NA	NA
WP_002293249.1|875631_876333_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.0	1.2e-34
>prophage 66
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	887600	891477	2633058		Lactobacillus_virus(50.0%)	3	NA	NA
WP_167779100.1|887600_888308_+	deoxynucleoside kinase	NA	C1KFI3	Lactobacillus_virus	48.2	1.3e-49
WP_070770617.1|888387_889071_-	DUF1275 domain-containing protein	NA	NA	NA	NA	NA
WP_167779101.1|889290_891477_+	ATP-dependent helicase	NA	G3MA40	Bacillus_virus	26.1	7.8e-40
>prophage 67
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	898358	903650	2633058		Molluscum_contagiosum_virus(33.33%)	6	NA	NA
WP_024635446.1|898358_898829_-	glutathione peroxidase	NA	A0A1S7DLQ4	Molluscum_contagiosum_virus	27.5	1.2e-06
WP_002289439.1|898989_899448_-	S-ribosylhomocysteine lyase	NA	NA	NA	NA	NA
WP_167779103.1|899619_900765_-	cystathionine gamma-synthase	NA	NA	NA	NA	NA
WP_167779104.1|900777_901695_-	cysteine synthase family protein	NA	A0A1W6JHY1	Lactococcus_phage	41.9	4.0e-62
WP_002289434.1|902121_902685_+	elongation factor P	NA	NA	NA	NA	NA
WP_167779105.1|902882_903650_+	DnaJ domain-containing protein	NA	A0A1V0SCV5	Indivirus	54.9	2.6e-06
>prophage 68
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	918156	919539	2633058		Streptococcus_phage(100.0%)	1	NA	NA
WP_002291409.1|918156_919539_-	Y-family DNA polymerase	NA	M1Q231	Streptococcus_phage	40.8	6.2e-91
>prophage 69
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	928072	928819	2633058		Staphylococcus_phage(100.0%)	1	NA	NA
WP_002336048.1|928072_928819_+	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	24.3	2.8e-13
>prophage 70
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	933051	933660	2633058		Enterococcus_phage(100.0%)	1	NA	NA
WP_167779115.1|933051_933660_+	LysM peptidoglycan-binding domain-containing protein	NA	A0A249XZV3	Enterococcus_phage	54.1	4.7e-35
>prophage 71
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	962374	970205	2633058		Ectocarpus_siliculosus_virus(33.33%)	9	NA	NA
WP_167779122.1|962374_963400_+	HAMP domain-containing histidine kinase	NA	Q8QNA2	Ectocarpus_siliculosus_virus	33.8	1.4e-07
WP_002291228.1|963488_964355_+	glucose transporter GlcU	NA	NA	NA	NA	NA
WP_167779123.1|964391_965768_+	amino acid permease	NA	NA	NA	NA	NA
WP_002374970.1|965867_967064_-	toxic anion resistance protein	NA	A0A2K9VCT6	Lactobacillus_phage	28.7	3.9e-33
WP_002374972.1|967186_967849_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002329574.1|968076_968640_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_002286760.1|968652_968937_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002308200.1|968955_969648_+	5'-methylthioadenosine/adenosylhomocysteine nucleosidase	NA	NA	NA	NA	NA
WP_167779124.1|969659_970205_+	cysteine hydrolase	NA	G3MA16	Bacillus_virus	37.4	3.3e-24
>prophage 72
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	974037	982878	2633058		Cafeteria_roenbergensis_virus(25.0%)	8	NA	NA
WP_167779126.1|974037_975945_-	M13 family peptidase	NA	E3T4I7	Cafeteria_roenbergensis_virus	31.1	8.0e-81
WP_167779127.1|976076_976952_+	dihydrolipoamide dehydrogenase	NA	NA	NA	NA	NA
WP_002286741.1|977031_978006_+	ribose-phosphate diphosphokinase	NA	A0A1V0SHF7	Hokovirus	32.2	2.0e-40
WP_002329568.1|978184_979321_+	cysteine desulfurase	NA	NA	NA	NA	NA
WP_002286736.1|979457_979802_+	DUF1831 domain-containing protein	NA	NA	NA	NA	NA
WP_167779128.1|979910_980693_-	hypothetical protein	NA	NA	NA	NA	NA
WP_167779129.1|980883_982161_+	MFS transporter	NA	A0A2K5B2B5	Erysipelothrix_phage	37.8	1.3e-66
WP_002312057.1|982290_982878_+	metallophosphatase	NA	A0A288TXW7	Enterococcus_phage	41.5	3.8e-34
>prophage 73
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	997156	998814	2633058		Oenococcus_phage(50.0%)	2	NA	NA
WP_002308234.1|997156_998104_-	glycosyltransferase family 2 protein	NA	V5USA4	Oenococcus_phage	51.3	5.0e-84
WP_002308236.1|998349_998814_+	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	A0A0G2Y1B6	Acanthamoeba_polyphaga_mimivirus	37.8	4.0e-18
>prophage 74
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	1003721	1010899	2633058		Streptococcus_phage(25.0%)	8	NA	NA
WP_002308244.1|1003721_1004078_+	arsenate reductase family protein	NA	M1PLC0	Streptococcus_phage	43.2	9.1e-23
WP_167779136.1|1004079_1004418_+	glycine cleavage system protein H	NA	NA	NA	NA	NA
WP_167779137.1|1004812_1005847_+	ATP-binding cassette domain-containing protein	NA	G3M9Y6	Bacillus_virus	36.1	3.3e-28
WP_167779138.1|1005839_1006526_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_002345358.1|1006549_1007398_+	methionine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_167779139.1|1007594_1008368_+	Fe-S cluster assembly ATPase SufC	NA	A0A2R8FG22	Brazilian_cedratvirus	29.3	7.3e-09
WP_167779140.1|1008380_1009667_+	Fe-S cluster assembly protein SufD	NA	NA	NA	NA	NA
WP_002313371.1|1009663_1010899_+	cysteine desulfurase	NA	Q2XUY6	environmental_halophage	47.5	1.9e-112
>prophage 75
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	1018703	1022173	2633058		Paenibacillus_phage(50.0%)	3	NA	NA
WP_002345347.1|1018703_1019369_-	helix-turn-helix domain-containing protein	NA	A0A2I7SCV6	Paenibacillus_phage	42.0	8.5e-06
WP_167779146.1|1019494_1021531_+	DUF1430 domain-containing protein	NA	NA	NA	NA	NA
WP_104760417.1|1021534_1022173_+	ABC transporter ATP-binding protein	NA	W5SAS9	Pithovirus	32.1	4.5e-12
>prophage 76
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	1032089	1033307	2633058	transposase	Streptococcus_phage(100.0%)	1	NA	NA
WP_002335439.1|1032089_1033307_-|transposase	IS110 family transposase	transposase	A0A1X9I619	Streptococcus_phage	37.4	8.4e-68
>prophage 77
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	1041037	1041964	2633058		Anomala_cuprea_entomopoxvirus(100.0%)	1	NA	NA
WP_167779152.1|1041037_1041964_+	ATP-binding cassette domain-containing protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	32.8	2.0e-29
>prophage 78
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	1053487	1055220	2633058		Enterococcus_phage(33.33%)	3	NA	NA
WP_167779156.1|1053487_1054063_+	TIGR00730 family Rossman fold protein	NA	A0A1D3SNB7	Enterococcus_phage	44.9	2.0e-35
WP_002308312.1|1054062_1054503_+	nucleoside 2-deoxyribosyltransferase	NA	A0A2P0ZL88	Lactobacillus_phage	50.7	5.2e-36
WP_002293604.1|1054518_1055220_+	deoxynucleoside kinase	NA	C1KFI3	Lactobacillus_virus	48.2	2.3e-49
>prophage 79
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	1063632	1074800	2633058	transposase	Streptococcus_phage(40.0%)	7	NA	NA
WP_002334789.1|1063632_1064850_-|transposase	IS110 family transposase	transposase	A0A1X9I619	Streptococcus_phage	37.4	2.9e-68
WP_002346112.1|1065343_1067437_+	LTA synthase family protein	NA	W6LM83	Streptococcus_phage	47.1	5.9e-162
WP_002308327.1|1067655_1068522_+	Rgg/GadR/MutR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002308328.1|1068543_1068981_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	45.5	9.2e-25
WP_167779490.1|1069639_1072318_+	magnesium-translocating P-type ATPase	NA	M1HXH2	Paramecium_bursaria_Chlorella_virus	25.3	4.3e-48
WP_167779161.1|1072405_1073077_+	HAD family phosphatase	NA	NA	NA	NA	NA
WP_002308334.1|1073726_1074800_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	34.5	4.9e-27
>prophage 80
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	1084162	1087044	2633058		Streptococcus_phage(100.0%)	2	NA	NA
WP_167779162.1|1084162_1085284_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	31.3	4.9e-22
WP_002334914.1|1085541_1087044_+	ABC-F type ribosomal protection protein Eat(A)	NA	A0A1B0RXA0	Streptococcus_phage	25.3	3.1e-27
>prophage 81
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	1094903	1099261	2633058		Staphylococcus_phage(50.0%)	5	NA	NA
WP_167779165.1|1094903_1095809_-	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	39.4	1.5e-37
WP_167779166.1|1095969_1096290_-	multidrug efflux SMR transporter	NA	NA	NA	NA	NA
WP_002308360.1|1096762_1097449_+	DUF969 domain-containing protein	NA	NA	NA	NA	NA
WP_002308361.1|1097450_1098395_+	DUF979 domain-containing protein	NA	NA	NA	NA	NA
WP_002312147.1|1098574_1099261_-	ATP-binding cassette domain-containing protein	NA	G3M9Y6	Bacillus_virus	28.6	3.8e-17
>prophage 82
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	1104136	1104886	2633058		Lactobacillus_phage(100.0%)	1	NA	NA
WP_002334906.1|1104136_1104886_-	nicotinamide mononucleotide transporter	NA	A0A2H4PB74	Lactobacillus_phage	71.6	3.0e-92
>prophage 83
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	1108659	1113620	2633058	tRNA	Pandoravirus(33.33%)	6	NA	NA
WP_002308387.1|1108659_1109340_+	uracil-DNA glycosylase	NA	A0A0B5IW78	Pandoravirus	43.0	3.3e-45
WP_002312157.1|1109492_1110473_+	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_002308391.1|1110597_1111071_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_002306112.1|1111063_1111588_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_002313434.1|1111836_1112370_-	exonuclease	NA	A0A1S5SFA9	Streptococcus_phage	43.4	5.9e-26
WP_002308394.1|1112867_1113620_-	exodeoxyribonuclease III	NA	E3T4M6	Cafeteria_roenbergensis_virus	47.1	9.8e-59
>prophage 84
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	1121540	1130765	2633058		Mycoplasma_phage(50.0%)	10	NA	NA
WP_167779173.1|1121540_1123055_+	flavocytochrome c	NA	A0A2P0ZL82	Lactobacillus_phage	29.9	1.1e-48
WP_002312163.1|1123393_1124377_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_002308407.1|1124381_1125029_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_002308409.1|1125113_1125746_-	ECF transporter S component	NA	NA	NA	NA	NA
WP_002308411.1|1125762_1126314_-	phosphopantothenoylcysteine decarboxylase	NA	A0A1V0S7W6	Shearwaterpox_virus	40.7	1.6e-29
WP_073490257.1|1126310_1127048_-	phosphopantothenate--cysteine ligase	NA	NA	NA	NA	NA
WP_073490258.1|1127044_1128034_-	oxidoreductase	NA	NA	NA	NA	NA
WP_002308415.1|1128302_1128845_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_002308416.1|1128861_1129947_+	ABC transporter ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	46.5	3.6e-38
WP_002287038.1|1129958_1130765_+	ABC transporter permease	NA	Q6GZ02	Mycoplasma_phage	27.6	7.9e-14
>prophage 85
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	1134789	1148926	2633058	transposase	Bacillus_phage(40.0%)	10	NA	NA
WP_065763699.1|1134789_1135701_+	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	49.8	7.2e-48
WP_002312172.1|1135697_1136474_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_094850654.1|1136661_1137788_-|transposase	IS3 family transposase	transposase	A0A1P8CWQ3	Bacillus_phage	54.1	2.3e-75
WP_002312173.1|1138219_1138927_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_002312174.1|1138928_1140218_+	GHKL domain-containing protein	NA	NA	NA	NA	NA
WP_073490262.1|1140232_1141996_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	35.8	2.5e-84
WP_073490263.1|1142865_1143996_+	5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase	NA	A0A218MNE0	uncultured_virus	45.5	3.0e-83
WP_073490264.1|1144168_1144960_+	hypothetical protein	NA	NA	NA	NA	NA
WP_073490265.1|1145184_1146798_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_002334889.1|1146991_1148926_-	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	31.5	2.1e-57
>prophage 86
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	1173530	1186998	2633058		Planktothrix_phage(16.67%)	11	NA	NA
WP_002308499.1|1173530_1174199_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	41.8	1.4e-35
WP_002308501.1|1174218_1174797_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_167779178.1|1175229_1177515_+	chitinase	NA	A0A1B1V5N4	Malacosoma_sp._alphabaculovirus	26.6	1.0e-34
WP_002312200.1|1177637_1178552_+	N-acetylmuramoyl-L-alanine amidase	NA	C8CHK8	Thermus_virus	41.1	5.3e-06
WP_002308512.1|1178927_1179845_-	ribonuclease HIII	NA	NA	NA	NA	NA
WP_002290800.1|1180046_1180484_+	cell division protein ZapA	NA	NA	NA	NA	NA
WP_002308513.1|1180541_1181090_+	colicin V production protein CvpA	NA	NA	NA	NA	NA
WP_002316435.1|1181233_1183594_+	endonuclease MutS2	NA	Q94M10	Lactobacillus_phage	51.3	1.7e-24
WP_002290803.1|1183680_1183995_+	thioredoxin	NA	A0A1J0GW78	Streptomyces_phage	40.8	3.6e-15
WP_002345280.1|1184176_1185955_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_002313470.1|1186098_1186998_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	29.7	9.4e-24
>prophage 87
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	1203597	1204965	2633058		uncultured_Mediterranean_phage(100.0%)	1	NA	NA
WP_002292830.1|1203597_1204965_-	HD domain-containing protein	NA	A0A1B1ISR1	uncultured_Mediterranean_phage	32.7	8.1e-27
>prophage 88
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	1212794	1213721	2633058		Anomala_cuprea_entomopoxvirus(100.0%)	1	NA	NA
WP_073357423.1|1212794_1213721_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	26.8	2.0e-13
>prophage 89
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	1220449	1221748	2633058		Streptococcus_phage(100.0%)	1	NA	NA
WP_002292812.1|1220449_1221748_+	phosphopyruvate hydratase	NA	W6LP63	Streptococcus_phage	81.5	3.6e-194
>prophage 90
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	1229258	1232102	2633058		Lactococcus_phage(50.0%)	2	NA	NA
WP_123830492.1|1229258_1231616_+	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	41.7	1.5e-97
WP_002292799.1|1231637_1232102_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	58.5	1.0e-45
>prophage 91
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	1241180	1241477	2633058		Staphylococcus_phage(100.0%)	1	NA	NA
WP_002308581.1|1241180_1241477_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	58.0	3.0e-19
>prophage 92
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	1245082	1247963	2633058		Streptococcus_phage(100.0%)	4	NA	NA
WP_002308585.1|1245082_1245727_-	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	52.3	1.0e-48
WP_002292779.1|1245853_1246141_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002292778.1|1246248_1246569_+	PTS sugar transporter subunit IIB	NA	NA	NA	NA	NA
WP_002313493.1|1246649_1247963_+	DEAD/DEAH box helicase family protein	NA	A0A1X9I5S6	Streptococcus_phage	37.2	1.5e-65
>prophage 93
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	1253446	1254133	2633058		Bacillus_virus(100.0%)	1	NA	NA
WP_002292768.1|1253446_1254133_+	cell division ATP-binding protein FtsE	NA	G3M9Y6	Bacillus_virus	25.0	5.5e-16
>prophage 94
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	1259737	1261318	2633058		Bacillus_virus(100.0%)	2	NA	NA
WP_002292758.1|1259737_1260544_+	phosphate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.4	3.6e-14
WP_002292757.1|1260559_1261318_+	phosphate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	27.8	3.9e-15
>prophage 95
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	1269686	1270625	2633058		Bacillus_phage(100.0%)	1	NA	NA
WP_002291647.1|1269686_1270625_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	51.2	5.5e-75
>prophage 96
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	1280248	1281151	2633058		Bodo_saltans_virus(100.0%)	1	NA	NA
WP_002335980.1|1280248_1281151_+	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	30.7	1.5e-21
>prophage 97
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	1285649	1289185	2633058		Bacillus_phage(100.0%)	2	NA	NA
WP_167779190.1|1285649_1287401_+	ATP-binding cassette domain-containing protein	NA	W8CYL7	Bacillus_phage	30.6	2.5e-57
WP_002305588.1|1287400_1289185_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.6	2.7e-46
>prophage 98
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	1297699	1306418	2633058		Bacillus_virus(25.0%)	9	NA	NA
WP_167779192.1|1297699_1298626_+	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	53.1	6.0e-90
WP_002296152.1|1298839_1300567_+	phospho-sugar mutase	NA	A0A1X9I671	Streptococcus_phage	63.6	3.3e-211
WP_002291691.1|1300638_1300932_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_167779193.1|1301015_1301876_-	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_002287322.1|1301967_1302396_+	transcriptional repressor	NA	NA	NA	NA	NA
WP_002287321.1|1302557_1302734_+	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_167779194.1|1302760_1303207_+	GatB/YqeY domain-containing protein	NA	A0A292GL36	Xanthomonas_phage	38.8	7.0e-20
WP_167779195.1|1303362_1304742_-	branched-chain amino acid transport system II carrier protein	NA	NA	NA	NA	NA
WP_002291698.1|1305446_1306418_+	PhoH family protein	NA	W8D063	Erwinia_phage	49.8	3.5e-48
>prophage 99
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	1317723	1331748	2633058		Catovirus(33.33%)	13	NA	NA
WP_167779201.1|1317723_1318422_+	CpsD/CapB family tyrosine-protein kinase	NA	A0A1X9I5D6	Streptococcus_phage	37.1	1.2e-26
WP_002345246.1|1318449_1319214_+	protein-tyrosine-phosphatase	NA	NA	NA	NA	NA
WP_167779202.1|1319226_1321044_+	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	31.3	4.4e-28
WP_086328601.1|1321027_1321669_+	sugar transferase	NA	NA	NA	NA	NA
WP_034700913.1|1321665_1322532_+	NAD-dependent epimerase/dehydratase family protein	NA	NA	NA	NA	NA
WP_034700911.1|1322528_1323752_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_167779203.1|1323754_1324777_+	polysaccharide biosynthesis protein	NA	A0A1V0SAI8	Catovirus	34.0	1.4e-36
WP_167779204.1|1324773_1325883_+	capsular polysaccharide biosynthesis protein CapF	NA	NA	NA	NA	NA
WP_167779205.1|1325886_1327011_+	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A1V0SJE0	Klosneuvirus	50.0	9.7e-103
WP_167779206.1|1327007_1328171_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_167779491.1|1328588_1329446_+	hypothetical protein	NA	NA	NA	NA	NA
WP_167779207.1|1329562_1330486_+	glycosyltransferase	NA	A0A1V0SAH6	Catovirus	40.5	2.2e-12
WP_125190861.1|1330581_1331748_+	nucleotide sugar dehydrogenase	NA	M1HV26	Paramecium_bursaria_Chlorella_virus	50.0	3.2e-101
>prophage 100
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	1342894	1344163	2633058		Streptococcus_phage(100.0%)	1	NA	NA
WP_070544152.1|1342894_1344163_+	voltage-gated chloride channel family protein	NA	A0A1X9I5Z9	Streptococcus_phage	31.3	1.3e-42
>prophage 101
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	1349467	1367911	2633058	tRNA	Streptococcus_phage(28.57%)	16	NA	NA
WP_002288762.1|1349467_1349668_+	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	74.2	2.5e-22
WP_167779214.1|1349814_1352604_+	DEAD/DEAH box helicase family protein	NA	A0A1X9I5C8	Streptococcus_phage	30.9	8.1e-90
WP_002348809.1|1352650_1353178_+	DUF5590 domain-containg protein	NA	NA	NA	NA	NA
WP_002344389.1|1353198_1354389_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_002344388.1|1354428_1355727_+|tRNA	asparagine--tRNA ligase	tRNA	A0A2P1EMB4	Moumouvirus	30.3	1.2e-59
WP_002328482.1|1356130_1356517_+	iron-sulfur cluster biosynthesis family protein	NA	NA	NA	NA	NA
WP_002344387.1|1356685_1357360_+	SGNH/GDSL hydrolase family protein	NA	NA	NA	NA	NA
WP_002316395.1|1357356_1357698_+	hypothetical protein	NA	NA	NA	NA	NA
WP_167779215.1|1357727_1358087_+	YccF domain-containing protein	NA	NA	NA	NA	NA
WP_167779216.1|1358290_1360372_+	cadmium-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	35.9	2.1e-119
WP_002344383.1|1360682_1362149_+	amino acid permease	NA	NA	NA	NA	NA
WP_002340851.1|1362258_1362798_+	DNA topology modulation protein	NA	A0A097BYE2	Leuconostoc_phage	33.3	1.0e-17
WP_002291784.1|1362871_1363312_+	CopY/TcrY family copper transport repressor	NA	NA	NA	NA	NA
WP_123830649.1|1363324_1363534_+	copper chaperone CopZ	NA	NA	NA	NA	NA
WP_010732212.1|1363533_1365720_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	38.8	6.3e-122
WP_167779217.1|1365739_1367911_+	copper/silver-translocating P-type ATPase CopB	NA	A0A218MNH6	uncultured_virus	32.6	7.7e-72
>prophage 102
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	1371260	1372205	2633058		Acidianus_two-tailed_virus(100.0%)	1	NA	NA
WP_010727086.1|1371260_1372205_-	MoxR family ATPase	NA	A0A1C9EGB9	Acidianus_two-tailed_virus	26.3	2.2e-07
>prophage 103
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	1376859	1383517	2633058		Bacillus_phage(66.67%)	4	NA	NA
WP_123856411.1|1376859_1379328_+	cation-translocating P-type ATPase	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	28.8	1.2e-44
WP_167779219.1|1379512_1380982_+	C69 family dipeptidase	NA	NA	NA	NA	NA
WP_070770345.1|1381076_1382816_-	two-component sensor histidine kinase	NA	W8CYF6	Bacillus_phage	33.6	1.6e-27
WP_167779220.1|1382812_1383517_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	35.8	4.0e-38
>prophage 104
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	1387320	1390271	2633058		Lactobacillus_phage(50.0%)	4	NA	NA
WP_002290264.1|1387320_1387875_-	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL77	Lactobacillus_phage	28.7	3.9e-12
WP_104846798.1|1388054_1389167_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_081185936.1|1389168_1389369_+	hypothetical protein	NA	NA	NA	NA	NA
WP_167779223.1|1389368_1390271_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	35.4	4.7e-31
>prophage 105
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	1393280	1431459	2633058	transposase,tRNA,integrase,plate,holin	Enterococcus_phage(33.33%)	42	1393398:1393412	1422905:1422919
WP_002313567.1|1393280_1394042_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
1393398:1393412	attL	GACTATTCAGATAAT	NA	NA	NA	NA
WP_002290284.1|1394177_1394525_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_002313569.1|1395366_1397031_+	acetolactate synthase AlsS	NA	NA	NA	NA	NA
WP_002313570.1|1397043_1397754_+	acetolactate decarboxylase	NA	NA	NA	NA	NA
WP_002293167.1|1397883_1398381_+	GAF domain-containing protein	NA	NA	NA	NA	NA
WP_002289617.1|1398566_1398827_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002313574.1|1399746_1400862_+|plate	BppU family phage baseplate upper protein	plate	A0A288TYH2	Enterococcus_phage	41.8	1.3e-22
WP_002313575.1|1400988_1401939_+	hypothetical protein	NA	A0A249XZH9	Enterococcus_phage	45.8	4.2e-30
WP_167779224.1|1401952_1402393_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002314480.1|1402394_1402532_+	XkdX family protein	NA	NA	NA	NA	NA
WP_167779225.1|1402569_1402863_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002314481.1|1402886_1403084_+|holin	holin	holin	A0A0S2MYF6	Enterococcus_phage	87.5	3.5e-24
WP_123856884.1|1403094_1404108_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A1G5SA77	Enterococcus_phage	63.7	4.6e-59
WP_002313578.1|1404140_1405142_-	Abi family protein	NA	M1PS09	Streptococcus_phage	36.9	2.0e-27
WP_002313579.1|1406108_1406411_-	hypothetical protein	NA	NA	NA	NA	NA
WP_081186009.1|1407167_1407941_-	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
WP_002290403.1|1408084_1408435_+	SdpI family protein	NA	NA	NA	NA	NA
WP_002290404.1|1408415_1409132_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	36.2	6.1e-34
WP_002290405.1|1409131_1410580_+	HAMP domain-containing histidine kinase	NA	A0A1V0SGX0	Hokovirus	29.3	1.0e-19
WP_002329381.1|1410652_1411162_-	hypothetical protein	NA	NA	NA	NA	NA
WP_123856784.1|1411151_1411877_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002308821.1|1412048_1414169_-	LTA synthase family protein	NA	W6LM83	Streptococcus_phage	58.4	7.5e-221
WP_167779226.1|1414397_1415576_+	class I SAM-dependent rRNA methyltransferase	NA	W6LLI2	Streptococcus_phage	48.9	1.7e-102
WP_167779227.1|1415591_1416344_+	type I 3-dehydroquinate dehydratase	NA	W6LP76	Streptococcus_phage	35.5	2.9e-26
WP_002290411.1|1416366_1416852_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_167779228.1|1416922_1418176_-	NAD(P)/FAD-dependent oxidoreductase	NA	A0A2H4PQX1	Staphylococcus_phage	55.3	1.7e-23
WP_002308828.1|1418292_1419642_+	NADP-specific glutamate dehydrogenase	NA	NA	NA	NA	NA
WP_002290415.1|1419753_1421100_+	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_002320150.1|1421203_1422427_-|integrase	site-specific integrase	integrase	A0A0P0I3D2	Lactobacillus_phage	43.0	1.5e-80
WP_002320149.1|1422583_1423252_-	hypothetical protein	NA	Q9AZW5	Lactococcus_phage	49.7	1.7e-38
1422905:1422919	attR	ATTATCTGAATAGTC	NA	NA	NA	NA
WP_002320148.1|1423317_1423746_-	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA	NA
WP_002320147.1|1423752_1424124_-	helix-turn-helix transcriptional regulator	NA	O03970	Lactobacillus_phage	42.3	1.1e-21
WP_002308837.1|1424275_1424503_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_167779229.1|1424623_1425118_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002314480.1|1425119_1425257_+	XkdX family protein	NA	NA	NA	NA	NA
WP_002308840.1|1425294_1425588_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002314481.1|1425611_1425809_+|holin	holin	holin	A0A0S2MYF6	Enterococcus_phage	87.5	3.5e-24
WP_167779230.1|1425819_1426833_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A1G5SA77	Enterococcus_phage	63.7	4.6e-59
WP_094850654.1|1427375_1428501_+|transposase	IS3 family transposase	transposase	A0A1P8CWQ3	Bacillus_phage	54.1	2.3e-75
WP_002346735.1|1428884_1429844_-|transposase	IS30-like element IS6770 family transposase	transposase	NA	NA	NA	NA
WP_002295273.1|1430064_1430322_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002287105.1|1430484_1431459_+	choloylglycine hydrolase family protein	NA	M1HVK5	Paramecium_bursaria_Chlorella_virus	31.8	5.4e-25
>prophage 106
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	1434839	1437362	2633058		Staphylococcus_phage(50.0%)	2	NA	NA
WP_167779233.1|1434839_1436639_-	glycerophosphodiester phosphodiesterase	NA	I6XE30	Staphylococcus_phage	27.3	8.2e-11
WP_002308851.1|1436765_1437362_-	TVP38/TMEM64 family protein	NA	M1Q152	Streptococcus_phage	41.1	4.3e-33
>prophage 107
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	1441580	1446989	2633058		Organic_Lake_phycodnavirus(33.33%)	6	NA	NA
WP_002308857.1|1441580_1443476_+	asparagine synthase (glutamine-hydrolyzing)	NA	F2Y2L7	Organic_Lake_phycodnavirus	26.2	6.0e-20
WP_002308858.1|1443557_1444004_-	DUF2188 domain-containing protein	NA	NA	NA	NA	NA
WP_002296119.1|1444231_1444381_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_002308859.1|1444468_1444987_+	dihydrofolate reductase	NA	G3MBI7	Bacillus_virus	39.1	5.4e-24
WP_167779234.1|1445060_1446017_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_002336482.1|1446182_1446989_+	ABC transporter ATP-binding protein	NA	A0A1V0SJ29	Klosneuvirus	30.0	7.9e-14
>prophage 108
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	1454792	1462277	2633058	tRNA	Hokovirus(25.0%)	8	NA	NA
WP_002308878.1|1454792_1455782_+	UDP-glucose 4-epimerase GalE	NA	A0A1V0SG19	Hokovirus	36.8	4.6e-48
WP_167779235.1|1455793_1457278_+	UDP-glucose--hexose-1-phosphate uridylyltransferase	NA	NA	NA	NA	NA
WP_167779236.1|1457302_1458283_+	LacI family DNA-binding transcriptional regulator	NA	C6ZCU4	Enterobacteria_phage	29.4	2.6e-19
WP_033607578.1|1458476_1459199_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	tRNA	NA	NA	NA	NA
WP_002334782.1|1459182_1459725_+	ribosomal protein S18-alanine N-acetyltransferase	NA	NA	NA	NA	NA
WP_002308883.1|1459731_1460196_+	ribosomal protein S18-alanine N-acetyltransferase	NA	NA	NA	NA	NA
WP_167779237.1|1460192_1461209_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	41.7	1.2e-59
WP_002308885.1|1461587_1462277_+	CpsD/CapB family tyrosine-protein kinase	NA	A0A1X9I5D6	Streptococcus_phage	37.3	2.3e-22
>prophage 109
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	1467324	1469016	2633058	tRNA	Orpheovirus(100.0%)	1	NA	NA
WP_002308891.1|1467324_1469016_+|tRNA	arginine--tRNA ligase	tRNA	A0A2I2L3K1	Orpheovirus	33.1	3.4e-75
>prophage 110
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	1475496	1476309	2633058		Flavobacterium_phage(100.0%)	1	NA	NA
WP_002308897.1|1475496_1476309_+	isoprenyl transferase	NA	R9W0U9	Flavobacterium_phage	45.3	1.3e-24
>prophage 111
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	1480523	1489627	2633058		Clostridium_phage(50.0%)	6	NA	NA
WP_002308901.1|1480523_1484876_+	PolC-type DNA polymerase III	NA	A0A0K2SUJ2	Clostridium_phage	41.4	5.0e-22
WP_002308902.1|1485019_1485493_+	ribosome maturation factor RimP	NA	NA	NA	NA	NA
WP_002308903.1|1485515_1486691_+	transcription termination/antitermination protein NusA	NA	NA	NA	NA	NA
WP_002288501.1|1486712_1487006_+	YlxR family protein	NA	NA	NA	NA	NA
WP_002308904.1|1487002_1487314_+	YlxQ-related RNA-binding protein	NA	NA	NA	NA	NA
WP_167779241.1|1487326_1489627_+	translation initiation factor IF-2	NA	A0A2H4UTS4	Bodo_saltans_virus	23.8	1.6e-19
>prophage 112
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	1510923	1520462	2633058	transposase	Chrysochromulina_ericina_virus(40.0%)	9	NA	NA
WP_002301399.1|1510923_1511883_+|transposase	IS30 family transposase	transposase	H7BW61	unidentified_phage	26.8	2.2e-10
WP_002292140.1|1512019_1512685_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002292139.1|1513176_1513407_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002292138.1|1513403_1513670_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A1S5S8E8	Streptococcus_phage	41.2	4.7e-16
WP_167779247.1|1514164_1515331_+	oxygen-independent coproporphyrinogen III oxidase	NA	A0A0N7G7K6	Chrysochromulina_ericina_virus	31.9	4.2e-08
WP_167779248.1|1515564_1516608_+	heat-inducible transcriptional repressor HrcA	NA	NA	NA	NA	NA
WP_002292135.1|1516701_1517265_+	nucleotide exchange factor GrpE	NA	NA	NA	NA	NA
WP_002292134.1|1517315_1519145_+	molecular chaperone DnaK	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	48.8	2.2e-136
WP_002292130.1|1519295_1520462_+	molecular chaperone DnaJ	NA	A0A1V0SBY2	Catovirus	25.7	2.5e-24
>prophage 113
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	1524802	1525699	2633058		Synechococcus_phage(100.0%)	1	NA	NA
WP_002308995.1|1524802_1525699_+	2-hydroxy-3-oxopropionate reductase	NA	E3SIC7	Synechococcus_phage	25.8	6.5e-09
>prophage 114
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	1529898	1531829	2633058		Streptococcus_phage(50.0%)	2	NA	NA
WP_002292114.1|1529898_1531047_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	39.2	1.1e-45
WP_002292113.1|1531091_1531829_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	44.7	2.8e-34
>prophage 115
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	1535595	1543660	2633058		Streptococcus_phage(50.0%)	6	NA	NA
WP_002313677.1|1535595_1538412_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	57.3	1.8e-310
WP_002320122.1|1538674_1539940_+	carboxylate--amine ligase	NA	NA	NA	NA	NA
WP_167779252.1|1539943_1540675_+	aspartate racemase	NA	NA	NA	NA	NA
WP_002292102.1|1540811_1541696_+	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	31.4	5.4e-08
WP_002316327.1|1541692_1542691_+	YvcK family protein	NA	A1IMD5	Streptococcus_phage	62.6	1.3e-114
WP_002292098.1|1542724_1543660_+	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	39.1	2.0e-53
>prophage 116
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	1555913	1559455	2633058		Paramecium_bursaria_Chlorella_virus(50.0%)	3	NA	NA
WP_002306489.1|1555913_1557719_-	glutamine--fructose-6-phosphate transaminase (isomerizing)	NA	A7IW18	Paramecium_bursaria_Chlorella_virus	38.3	9.8e-97
WP_167779253.1|1558126_1558417_+	hypothetical protein	NA	NA	NA	NA	NA
WP_167779254.1|1558429_1559455_+	signal peptide peptidase SppA	NA	A0A2I6UH21	Salinibacter_virus	28.8	1.0e-18
>prophage 117
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	1562861	1564112	2633058	protease	Bacillus_virus(100.0%)	1	NA	NA
WP_002292068.1|1562861_1564112_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	62.5	7.2e-147
>prophage 118
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	1572291	1576579	2633058		Bacillus_phage(50.0%)	2	NA	NA
WP_002334742.1|1572291_1574526_+	DNA helicase PcrA	NA	A7KV33	Bacillus_phage	40.0	2.1e-125
WP_002306506.1|1574542_1576579_+	NAD-dependent DNA ligase LigA	NA	A0A289ZTZ3	Serratia_phage	37.1	6.3e-100
>prophage 119
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	1579898	1589988	2633058		Bacillus_phage(33.33%)	8	NA	NA
WP_002292050.1|1579898_1580954_+	diacylglycerol kinase	NA	A0A1V0SBJ0	Catovirus	27.4	1.9e-15
WP_002309023.1|1581064_1582438_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	D0R096	Streptococcus_phage	56.3	1.3e-141
WP_002306511.1|1582785_1582947_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002309025.1|1582934_1584719_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	28.2	2.1e-46
WP_002334738.1|1584733_1586455_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	4.1e-36
WP_002309028.1|1586553_1587315_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_167779257.1|1587763_1588900_+	5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase	NA	A0A218MNE0	uncultured_virus	41.8	1.6e-81
WP_002334737.1|1588977_1589988_+	alpha/beta hydrolase	NA	M1PGN2	Moumouvirus	25.2	4.9e-13
>prophage 120
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	1593444	1595328	2633058		Herpes_simplex_virus(100.0%)	1	NA	NA
WP_002342180.1|1593444_1595328_+	beta-galactosidase large subunit	NA	L0N6M2	Herpes_simplex_virus	34.4	2.4e-98
>prophage 121
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	1599078	1600245	2633058		Pandoravirus(100.0%)	1	NA	NA
WP_167779259.1|1599078_1600245_+	chorismate synthase	NA	A0A291AU41	Pandoravirus	34.8	6.0e-39
>prophage 122
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	1604053	1605781	2633058		Enterobacteria_phage(100.0%)	1	NA	NA
WP_002292019.1|1604053_1605781_-	histidine kinase	NA	Q9EYF3	Enterobacteria_phage	31.1	3.8e-21
>prophage 123
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	1619341	1620073	2633058		Bacillus_phage(100.0%)	1	NA	NA
WP_002291986.1|1619341_1620073_+	serine/threonine protein phosphatase	NA	A7KV25	Bacillus_phage	30.4	6.5e-15
>prophage 124
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	1626733	1630260	2633058		Bacillus_phage(100.0%)	2	NA	NA
WP_167779265.1|1626733_1629379_+	DNA polymerase I	NA	F8WQ35	Bacillus_phage	35.7	3.0e-54
WP_167779266.1|1629423_1630260_+	DNA-formamidopyrimidine glycosylase	NA	A0A127AWE5	Bacillus_phage	30.2	6.7e-24
>prophage 125
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	1633437	1634364	2633058		Brevibacillus_phage(100.0%)	1	NA	NA
WP_002306563.1|1633437_1634364_+	primosomal protein DnaI	NA	S5MU12	Brevibacillus_phage	41.3	5.1e-33
>prophage 126
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	1640793	1650864	2633058		Lactococcus_phage(50.0%)	9	NA	NA
WP_167779268.1|1640793_1643403_+	ATP-dependent chaperone ClpB	NA	A0A2I7SAX5	Vibrio_phage	34.9	6.1e-132
WP_002291950.1|1643552_1644224_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002291949.1|1644216_1644711_-	nucleoside 2-deoxyribosyltransferase	NA	A0A1W6JK28	Lactococcus_phage	56.5	1.4e-42
WP_002291948.1|1644730_1645951_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_002291945.1|1646097_1647933_+	elongation factor 4	NA	E4ZFJ7	Streptococcus_phage	24.4	5.8e-20
WP_167779269.1|1648794_1649076_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002313710.1|1649256_1649559_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002291935.1|1650230_1650374_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002291933.1|1650666_1650864_+	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	78.5	2.3e-23
>prophage 127
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	1655686	1659243	2633058		Wolbachia_phage(50.0%)	5	NA	NA
WP_002291922.1|1655686_1656100_-	Hsp20/alpha crystallin family protein	NA	A0A1B2LRT2	Wolbachia_phage	30.8	2.1e-07
WP_002291921.1|1656291_1656930_+	hypothetical protein	NA	NA	NA	NA	NA
WP_070873031.1|1657010_1657496_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002293281.1|1657633_1657849_-	DUF378 domain-containing protein	NA	NA	NA	NA	NA
WP_033607200.1|1658433_1659243_+	glycerophosphodiester phosphodiesterase family protein	NA	A0A0S2MYI4	Enterococcus_phage	30.3	3.2e-07
>prophage 128
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	1665788	1669332	2633058		Moumouvirus(50.0%)	5	NA	NA
WP_167779277.1|1665788_1666790_+	alpha/beta hydrolase	NA	A0A2P1EM31	Moumouvirus	32.5	3.9e-10
WP_002306600.1|1667034_1667241_-	DUF3955 domain-containing protein	NA	NA	NA	NA	NA
WP_002293298.1|1668085_1668235_-	hypothetical protein	NA	NA	NA	NA	NA
WP_167779278.1|1668397_1668889_+	flavodoxin family protein	NA	NA	NA	NA	NA
WP_002293303.1|1669131_1669332_+	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	77.3	3.9e-23
>prophage 129
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	1675427	1679508	2633058		Archaeal_BJ1_virus(50.0%)	5	NA	NA
WP_167779280.1|1675427_1676285_+	glycosyltransferase family 8 protein	NA	A0ZYL4	Archaeal_BJ1_virus	27.1	3.9e-19
WP_002306618.1|1676277_1677180_+	glycosyltransferase family 8 protein	NA	NA	NA	NA	NA
WP_002291264.1|1677212_1677563_+	iron-sulfur cluster biosynthesis family protein	NA	NA	NA	NA	NA
WP_167779281.1|1677596_1678535_+	magnesium transporter CorA family protein	NA	NA	NA	NA	NA
WP_002306620.1|1678614_1679508_+	SDR family oxidoreductase	NA	A0A2N9QUX2	Trichoplusia_ni_ascovirus	45.7	2.0e-58
>prophage 130
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	1732137	1735213	2633058	lysis	Tupanvirus(50.0%)	3	NA	NA
WP_002290735.1|1732137_1733304_+	class I SAM-dependent methyltransferase	NA	A0A2K9L4K8	Tupanvirus	39.3	1.6e-47
WP_167779297.1|1733537_1734185_+|lysis	lysis protein	lysis	NA	NA	NA	NA
WP_002306688.1|1734268_1735213_+	dihydroorotate oxidase	NA	A0A1V0SH91	Hokovirus	44.2	1.5e-64
>prophage 131
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	1738439	1741400	2633058		Bacillus_phage(50.0%)	4	NA	NA
WP_002290743.1|1738439_1739129_+	hypothetical protein	NA	U5PU21	Bacillus_phage	33.7	8.2e-20
WP_002306695.1|1739134_1740130_+	sce7725 family protein	NA	NA	NA	NA	NA
WP_167779298.1|1740136_1740649_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_025478124.1|1740842_1741400_-	AAA family ATPase	NA	S4W1R9	Pandoravirus	31.7	2.3e-12
>prophage 132
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	1752393	1756232	2633058		Staphylococcus_phage(50.0%)	3	NA	NA
WP_002290771.1|1752393_1753242_+	DegV family protein	NA	A0A0N9SI50	Staphylococcus_phage	37.4	9.8e-15
WP_002290778.1|1753476_1753956_+	hypothetical protein	NA	NA	NA	NA	NA
WP_167779299.1|1753988_1756232_+	AAA domain-containing protein	NA	R4T8G7	Halovirus	23.4	2.9e-05
>prophage 133
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	1770006	1770693	2633058		Planktothrix_phage(100.0%)	1	NA	NA
WP_002286060.1|1770006_1770693_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.0	1.9e-29
>prophage 134
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	1795889	1798118	2633058		Streptococcus_phage(100.0%)	1	NA	NA
WP_002329190.1|1795889_1798118_-	type IA DNA topoisomerase	NA	A0A1X9I6W8	Streptococcus_phage	52.2	1.3e-127
>prophage 135
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	1801297	1802068	2633058		Anomala_cuprea_entomopoxvirus(100.0%)	1	NA	NA
WP_002309294.1|1801297_1802068_-	ATP-binding cassette domain-containing protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	27.3	9.6e-09
>prophage 136
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	1809814	1810450	2633058		Paramecium_bursaria_Chlorella_virus(100.0%)	1	NA	NA
WP_002309302.1|1809814_1810450_-	HAD family phosphatase	NA	A7ITQ4	Paramecium_bursaria_Chlorella_virus	29.7	6.9e-13
>prophage 137
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	1823587	1829890	2633058		Halovirus(25.0%)	6	NA	NA
WP_002309321.1|1823587_1824664_-	carbamoyl phosphate synthase small subunit	NA	R4TGJ8	Halovirus	36.2	4.4e-60
WP_002329183.1|1824668_1825949_-	dihydroorotase	NA	NA	NA	NA	NA
WP_002309323.1|1825967_1826894_-	aspartate carbamoyltransferase catalytic subunit	NA	M1HWF9	Paramecium_bursaria_Chlorella_virus	32.1	2.1e-26
WP_002309324.1|1826906_1828190_-	uracil transporter	NA	Q9KX94	Enterobacteria_phage	37.3	3.2e-65
WP_002295862.1|1828203_1828743_-	bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR	NA	NA	NA	NA	NA
WP_002309325.1|1828978_1829890_-	RluA family pseudouridine synthase	NA	A0A2H4UV25	Bodo_saltans_virus	29.1	8.4e-12
>prophage 138
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	1833453	1833684	2633058		Lactococcus_phage(100.0%)	1	NA	NA
WP_002309330.1|1833453_1833684_+	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	49.2	5.5e-13
>prophage 139
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	1836839	1841698	2633058	tRNA	Tupanvirus(50.0%)	2	NA	NA
WP_167779321.1|1836839_1839482_-|tRNA	alanine--tRNA ligase	tRNA	A0A2K9L3D8	Tupanvirus	34.4	7.4e-69
WP_002309341.1|1840348_1841698_-	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	31.7	2.7e-51
>prophage 140
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	1849159	1851529	2633058		Emiliania_huxleyi_virus(50.0%)	2	NA	NA
WP_002335037.1|1849159_1850350_-	glycine C-acetyltransferase	NA	G9E4Q1	Emiliania_huxleyi_virus	32.9	1.4e-51
WP_002313797.1|1850845_1851529_-	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.7	3.9e-14
>prophage 141
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	1855976	1856624	2633058		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
WP_002309362.1|1855976_1856624_+	Holliday junction resolvase RecU	NA	A0A2H4J3A4	uncultured_Caudovirales_phage	38.1	7.5e-23
>prophage 142
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	1859689	1860388	2633058		Bacillus_phage(100.0%)	1	NA	NA
WP_065773155.1|1859689_1860388_-	DnaD domain protein	NA	A0A0N7AE27	Bacillus_phage	38.1	7.6e-13
>prophage 143
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	1865269	1874039	2633058		Streptococcus_phage(20.0%)	8	NA	NA
WP_002309374.1|1865269_1866196_-	cysteine synthase A	NA	A0A1X9I5K7	Streptococcus_phage	57.2	1.3e-97
WP_002309375.1|1866337_1867231_-	LysM peptidoglycan-binding domain-containing protein	NA	A0A0K2CP65	Brevibacillus_phage	43.2	4.5e-18
WP_002313803.1|1867477_1869475_-	transketolase	NA	NA	NA	NA	NA
WP_002309377.1|1869576_1869828_-	DUF896 family protein	NA	NA	NA	NA	NA
WP_002309378.1|1869974_1870598_+	transcriptional repressor LexA	NA	A0A1B2APZ1	Phage_Wrath	59.4	2.2e-16
WP_002297436.1|1870775_1870994_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002295813.1|1871215_1871728_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.6	2.4e-32
WP_167779330.1|1871741_1874039_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	33.7	6.7e-82
>prophage 144
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	1882365	1883118	2633058		Catovirus(100.0%)	1	NA	NA
WP_167779333.1|1882365_1883118_+	peptidylprolyl isomerase	NA	A0A1V0S9I2	Catovirus	38.5	1.8e-23
>prophage 145
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	1888271	1889627	2633058		Ugandan_cassava_brown_streak_virus(100.0%)	1	NA	NA
WP_002309406.1|1888271_1889627_-	ribonuclease PH	NA	A0A0P0A2M4	Ugandan_cassava_brown_streak_virus	30.8	9.2e-15
>prophage 146
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	1892771	1893509	2633058		Planktothrix_phage(100.0%)	1	NA	NA
WP_002309413.1|1892771_1893509_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.0	4.5e-32
>prophage 147
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	1898442	1903929	2633058	tRNA	Orpheovirus(50.0%)	3	NA	NA
WP_002292949.1|1898442_1899486_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2I2L4E3	Orpheovirus	33.6	1.9e-31
WP_002292948.1|1899796_1900138_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_002335032.1|1900206_1903929_-	helicase-exonuclease AddAB subunit AddA	NA	S5MMD7	Bacillus_phage	23.3	9.3e-25
>prophage 148
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	1907633	1909100	2633058		Acinetobacter_phage(100.0%)	1	NA	NA
WP_167779337.1|1907633_1909100_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	38.6	5.7e-87
>prophage 149
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	1913317	1916699	2633058		Streptococcus_phage(50.0%)	8	NA	NA
WP_002292937.1|1913317_1913506_+	hypothetical protein	NA	W6LMT3	Streptococcus_phage	44.3	5.9e-05
WP_002288067.1|1913660_1913849_-	hypothetical protein	NA	NA	NA	NA	NA
WP_167779340.1|1913872_1914136_-	hypothetical protein	NA	NA	NA	NA	NA
WP_167779341.1|1914293_1914491_+	glucose uptake protein	NA	NA	NA	NA	NA
WP_002292933.1|1914620_1914812_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002292931.1|1914954_1915275_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002292929.1|1915297_1915732_-	universal stress protein	NA	NA	NA	NA	NA
WP_002344153.1|1916066_1916699_+	LysM peptidoglycan-binding domain-containing protein	NA	A0A249XZV3	Enterococcus_phage	56.6	9.2e-34
>prophage 150
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	1921100	1922021	2633058		Streptococcus_phage(100.0%)	1	NA	NA
WP_167779499.1|1921100_1922021_-	YitT family protein	NA	M1Q1P6	Streptococcus_phage	29.6	1.6e-23
>prophage 151
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	1925424	1929929	2633058		Streptococcus_phage(100.0%)	4	NA	NA
WP_167779346.1|1925424_1926051_+	MBL fold metallo-hydrolase	NA	A0A1X9I5D3	Streptococcus_phage	50.0	9.1e-50
WP_002309433.1|1926074_1926779_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_002309434.1|1926970_1927804_+	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA	NA
WP_002292184.1|1928000_1929929_+	cadmium-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	38.5	2.9e-107
>prophage 152
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	1933062	1935868	2633058		Clostridium_botulinum_C_phage(50.0%)	2	NA	NA
WP_167779347.1|1933062_1935336_-	DNA internalization-related competence protein ComEC/Rec2	NA	Q332C0	Clostridium_botulinum_C_phage	30.9	9.6e-33
WP_002309439.1|1935328_1935868_-	ComE operon protein 2	NA	A7KUY9	Bacillus_phage	58.3	5.4e-35
>prophage 153
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	1946169	1947969	2633058		Acanthamoeba_polyphaga_mimivirus(100.0%)	1	NA	NA
WP_104835804.1|1946169_1947969_-	DNA helicase RecQ	NA	A0A0G2Y8K9	Acanthamoeba_polyphaga_mimivirus	36.7	1.3e-80
>prophage 154
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	1952235	1953642	2633058		Erysipelothrix_phage(100.0%)	1	NA	NA
WP_002289686.1|1952235_1953642_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.5	2.8e-46
>prophage 155
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	1957868	1967238	2633058		Streptococcus_phage(25.0%)	7	NA	NA
WP_002320073.1|1957868_1959293_-	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	24.2	5.0e-19
WP_002313834.1|1959427_1960405_-	GMP reductase	NA	G3MBI2	Bacillus_virus	80.1	1.0e-148
WP_002344173.1|1960661_1961867_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_167779349.1|1961868_1963395_-	sugar ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	30.6	6.3e-12
WP_167779350.1|1963448_1964537_-	sugar ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_167779351.1|1964756_1965773_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_167779352.1|1965786_1967238_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	29.1	3.5e-20
>prophage 156
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	1971254	1984954	2633058	transposase	Prochlorococcus_phage(22.22%)	13	NA	NA
WP_167779355.1|1971254_1972790_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	49.2	2.6e-74
WP_002309479.1|1972786_1973365_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	36.9	1.3e-26
WP_033627216.1|1973361_1974405_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	A0A1D7SE90	Cyanophage	43.9	2.9e-61
WP_073490706.1|1974436_1975876_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	33.1	9.1e-53
WP_167779356.1|1975860_1978083_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	41.3	6.5e-151
WP_002335014.1|1978083_1978755_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
WP_002309490.1|1978756_1979011_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_002313847.1|1979010_1979739_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	E3SPA9	Prochlorococcus_phage	40.9	1.1e-41
WP_002309492.1|1979994_1980372_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002306865.1|1980529_1981825_-	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	33.1	1.0e-18
WP_002316201.1|1981837_1982971_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_002309494.1|1982954_1983443_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	42.7	1.9e-23
WP_167779357.1|1983736_1984954_-|transposase	IS110 family transposase	transposase	A0A1X9I619	Streptococcus_phage	37.4	1.9e-67
>prophage 157
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	1994085	1994703	2633058		Clostridium_botulinum_C_phage(100.0%)	1	NA	NA
WP_002309502.1|1994085_1994703_-	glycoside hydrolase family 73 protein	NA	Q332B8	Clostridium_botulinum_C_phage	41.1	2.0e-25
>prophage 158
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	2004043	2005063	2633058		Brazilian_cedratvirus(100.0%)	1	NA	NA
WP_002309512.1|2004043_2005063_-	lactate dehydrogenase	NA	A0A2R8FDS8	Brazilian_cedratvirus	33.5	6.9e-23
>prophage 159
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	2011935	2012568	2633058		Enterococcus_phage(100.0%)	1	NA	NA
WP_002344153.1|2011935_2012568_+	LysM peptidoglycan-binding domain-containing protein	NA	A0A249XZV3	Enterococcus_phage	56.6	9.2e-34
>prophage 160
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	2017412	2018378	2633058		Planktothrix_phage(100.0%)	1	NA	NA
WP_002309526.1|2017412_2018378_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	7.5e-27
>prophage 161
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	2029777	2036793	2633058		Bacillus_virus(66.67%)	3	NA	NA
WP_002309546.1|2029777_2032009_-	formate C-acetyltransferase	NA	A0A2P0VNR5	Tetraselmis_virus	42.5	1.8e-169
WP_002316184.1|2032285_2034736_-	DNA topoisomerase IV subunit A	NA	G3M9Z5	Bacillus_virus	31.9	3.2e-98
WP_002335004.1|2034747_2036793_-	DNA topoisomerase IV subunit B	NA	G3M9Z3	Bacillus_virus	41.2	2.0e-114
>prophage 162
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	2040064	2048390	2633058	protease,tRNA	Erwinia_phage(25.0%)	7	NA	NA
WP_002313868.1|2040064_2041465_-|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A173GFL6	Erwinia_phage	29.0	1.7e-43
WP_104674598.1|2041478_2042027_-	HslU--HslV peptidase proteolytic subunit	NA	NA	NA	NA	NA
WP_002313869.1|2042062_2042968_-	tyrosine recombinase XerC	NA	A0A0K2CP59	Brevibacillus_phage	29.4	4.2e-32
WP_002316180.1|2043152_2044541_-|tRNA	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	tRNA	NA	NA	NA	NA
WP_002345057.1|2044509_2046588_-	type I DNA topoisomerase	NA	A0A167R9A0	Powai_lake_megavirus	38.4	2.0e-101
WP_167779368.1|2046709_2047567_-	DNA-protecting protein DprA	NA	NA	NA	NA	NA
WP_002309565.1|2047622_2048390_-	ribonuclease HII	NA	D2TEQ2	Emiliania_huxleyi_virus	41.4	4.5e-27
>prophage 163
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	2054000	2059070	2633058		Staphylococcus_phage(50.0%)	5	NA	NA
WP_002309576.1|2054000_2054843_-	DegV family protein	NA	A0A0N9SI50	Staphylococcus_phage	40.2	6.5e-19
WP_002309577.1|2054972_2055626_+	hemolysin III family protein	NA	NA	NA	NA	NA
WP_002313876.1|2055689_2056208_-	dihydrofolate reductase	NA	A0A1D6X864	Bacillus_phage	37.1	3.3e-21
WP_002344138.1|2056227_2057175_-	thymidylate synthase	NA	A0A0N9SH48	Staphylococcus_phage	65.0	2.5e-123
WP_167779369.1|2057186_2059070_-	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	29.9	1.5e-52
>prophage 164
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	2062670	2065343	2633058	tRNA	unidentified_phage(50.0%)	3	NA	NA
WP_002344136.1|2062670_2063879_-|tRNA	CCA tRNA nucleotidyltransferase	tRNA	H7BUW3	unidentified_phage	51.7	2.6e-45
WP_086310993.1|2063987_2064320_-	nucleotide pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_002309586.1|2064467_2065343_+	YitT family protein	NA	M1Q1P6	Streptococcus_phage	45.6	2.6e-63
>prophage 165
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	2068551	2068827	2633058		Geobacillus_virus(100.0%)	1	NA	NA
WP_002290178.1|2068551_2068827_-	HU family DNA-binding protein	NA	A0A0H3UZA0	Geobacillus_virus	69.7	1.8e-26
>prophage 166
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	2073355	2074759	2633058		Acanthamoeba_polyphaga_mimivirus(100.0%)	1	NA	NA
WP_167779371.1|2073355_2074759_-	ATP-dependent DNA helicase RecQ	NA	A0A0G2Y8K9	Acanthamoeba_polyphaga_mimivirus	35.9	6.5e-64
>prophage 167
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	2082217	2084821	2633058		uncultured_Mediterranean_phage(66.67%)	4	NA	NA
WP_167779373.1|2082217_2082793_-	SMC-Scp complex subunit ScpB	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	33.9	1.1e-14
WP_167779374.1|2082776_2083538_-	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	25.0	2.3e-07
WP_002290158.1|2083543_2083915_-	protein RibT	NA	NA	NA	NA	NA
WP_002309610.1|2083933_2084821_-	site-specific tyrosine recombinase XerD	NA	A0A0K2CP59	Brevibacillus_phage	29.3	2.7e-31
>prophage 168
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	2088964	2096174	2633058		Synechococcus_phage(25.0%)	5	NA	NA
WP_002290142.1|2088964_2090074_-	RNA polymerase sigma factor RpoD	NA	F4YCU2	Synechococcus_phage	38.9	9.8e-39
WP_002320677.1|2090097_2091939_-	DNA primase	NA	A0A1S5RH70	Helicobacter_phage	33.5	2.7e-49
WP_050375920.1|2092120_2094514_-	cation-translocating P-type ATPase	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	26.2	4.3e-39
WP_002309619.1|2094623_2095484_-	DUF368 domain-containing protein	NA	NA	NA	NA	NA
WP_002320675.1|2095541_2096174_-	lysozyme family protein	NA	A0A0N9SIT8	Bacillus_phage	38.1	7.3e-15
>prophage 169
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	2099906	2104036	2633058		Aureococcus_anophage(50.0%)	4	NA	NA
WP_002289463.1|2099906_2101094_-	elongation factor Tu	NA	A0A076FFS6	Aureococcus_anophage	28.5	1.3e-33
WP_167779376.1|2101461_2101818_+	YxeA family protein	NA	NA	NA	NA	NA
WP_167779377.1|2102014_2103019_-	nucleoid-associated protein	NA	NA	NA	NA	NA
WP_167779378.1|2103184_2104036_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	41.4	7.5e-55
>prophage 170
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	2109607	2116226	2633058	transposase	Streptococcus_phage(50.0%)	4	NA	NA
WP_104886029.1|2109607_2110927_+|transposase	IS1380 family transposase	transposase	A0A1X9I6F6	Streptococcus_phage	83.1	5.7e-211
WP_002309630.1|2111205_2112360_+	hydroxymethylglutaryl-CoA synthase	NA	NA	NA	NA	NA
WP_002309632.1|2112382_2113135_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_167779380.1|2113559_2116226_-	cation-translocating P-type ATPase	NA	M1HX51	Paramecium_bursaria_Chlorella_virus	29.7	5.9e-82
>prophage 171
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	2131725	2132517	2633058		Escherichia_phage(100.0%)	1	NA	NA
WP_002309656.1|2131725_2132517_+	DeoR/GlpR transcriptional regulator	NA	A0A077SK06	Escherichia_phage	29.8	1.0e-18
>prophage 172
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	2161956	2165758	2633058		Ectocarpus_siliculosus_virus(33.33%)	3	NA	NA
WP_167779387.1|2161956_2163462_-	HAMP domain-containing histidine kinase	NA	Q8QNA2	Ectocarpus_siliculosus_virus	25.1	3.9e-06
WP_167779388.1|2163458_2164145_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	31.2	4.8e-28
WP_002290971.1|2164336_2165758_-	NADP-dependent phosphogluconate dehydrogenase	NA	A0A1D7RI04	Synechococcus_phage	31.4	4.2e-34
>prophage 173
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	2170844	2177432	2633058		Streptomyces_phage(50.0%)	4	NA	NA
WP_002314168.1|2170844_2174156_-	DNA polymerase III subunit alpha	NA	A0A291AWR1	Streptomyces_phage	32.6	2.4e-149
WP_002290959.1|2174384_2174570_+	YjzD family protein	NA	NA	NA	NA	NA
WP_002310392.1|2174630_2175827_-	multidrug efflux MFS transporter	NA	NA	NA	NA	NA
WP_002310391.1|2175995_2177432_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	29.2	1.7e-43
>prophage 174
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	2182369	2186698	2633058	tRNA	Tupanvirus(50.0%)	3	NA	NA
WP_002344098.1|2182369_2184313_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L6B6	Tupanvirus	35.2	3.3e-114
WP_002287649.1|2184648_2184828_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_167779392.1|2184874_2186698_-	cadmium-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	30.9	4.8e-67
>prophage 175
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	2194090	2194738	2633058		Bacillus_virus(100.0%)	1	NA	NA
WP_167779502.1|2194090_2194738_-	nicotinate-nucleotide adenylyltransferase	NA	G3MA22	Bacillus_virus	33.2	2.2e-22
>prophage 176
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	2202150	2202888	2633058		Chrysochromulina_ericina_virus(100.0%)	1	NA	NA
WP_087063843.1|2202150_2202888_-	3-oxoacyl-[acyl-carrier-protein] reductase	NA	A0A0N9R355	Chrysochromulina_ericina_virus	27.6	9.8e-11
>prophage 177
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	2210691	2218163	2633058	protease	Hokovirus(33.33%)	6	NA	NA
WP_002310355.1|2210691_2212419_-	phosphoenolpyruvate--protein phosphotransferase	NA	A0A1V0SGR7	Hokovirus	35.9	9.3e-20
WP_002287602.1|2212418_2212685_-	phosphocarrier protein HPr	NA	NA	NA	NA	NA
WP_002310354.1|2213162_2215397_+|protease	ATP-dependent Clp protease ATP-binding subunit	protease	A0A223W0B1	Agrobacterium_phage	39.1	5.1e-127
WP_002310352.1|2215680_2216001_+	DUF1827 family protein	NA	NA	NA	NA	NA
WP_002310351.1|2216040_2216292_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002316963.1|2216582_2218163_-	peptide chain release factor 3	NA	A0A1B0RXH7	Streptococcus_phage	28.2	1.1e-32
>prophage 178
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	2224534	2228372	2633058		Erysipelothrix_phage(33.33%)	3	NA	NA
WP_002310337.1|2224534_2225917_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	37.5	1.2e-86
WP_167779503.1|2226088_2226667_-	chitin-binding protein	NA	A0A0K1Y848	Apis_mellifera_filamentous_virus	33.3	1.1e-12
WP_002320427.1|2226824_2228372_-	endochitinase	NA	M1HAV4	Paramecium_bursaria_Chlorella_virus	27.9	3.2e-19
>prophage 179
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	2238086	2240531	2633058		Lactococcus_phage(33.33%)	4	NA	NA
WP_002292860.1|2238086_2238287_-	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	67.7	7.6e-19
WP_002310320.1|2238420_2239029_-	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	60.6	1.7e-69
WP_002310319.1|2239113_2239584_-	GtrA family protein	NA	NA	NA	NA	NA
WP_167779400.1|2239631_2240531_-	cation transporter	NA	A0A1V0SED0	Indivirus	32.9	3.5e-10
>prophage 180
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	2243940	2247051	2633058		Staphylococcus_phage(100.0%)	1	NA	NA
WP_167779402.1|2243940_2247051_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A1D6Z273	Staphylococcus_phage	35.6	8.0e-22
>prophage 181
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	2251784	2263460	2633058		Mycobacterium_phage(20.0%)	11	NA	NA
WP_167779403.1|2251784_2252945_+	beta-lactamase family protein	NA	A0A2R4AS58	Mycobacterium_phage	24.2	1.4e-08
WP_167779404.1|2252982_2253930_-	NAD-dependent epimerase/dehydratase family protein	NA	A0A1V0SKV4	Klosneuvirus	37.5	4.3e-51
WP_025476958.1|2253981_2255412_-	membrane protein	NA	NA	NA	NA	NA
WP_002344066.1|2255445_2256381_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002310309.1|2256393_2257218_-	LicD family protein	NA	G8DGF1	Emiliania_huxleyi_virus	29.0	3.1e-05
WP_167779405.1|2257226_2258609_-	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_002310306.1|2258624_2259602_-	glycosyltransferase	NA	A0A0F7L2F7	uncultured_marine_virus	35.5	6.7e-07
WP_002344063.1|2259594_2260659_-	NAD-dependent epimerase/dehydratase family protein	NA	NA	NA	NA	NA
WP_002310302.1|2260669_2261371_-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_151668653.1|2261367_2262240_-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_002346319.1|2262419_2263460_-	glycosyltransferase family 2 protein	NA	A8CG95	Salmonella_phage	31.5	3.9e-05
>prophage 182
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	2268916	2270137	2633058		Staphylococcus_phage(100.0%)	1	NA	NA
WP_167779408.1|2268916_2270137_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.9	1.1e-11
>prophage 183
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	2274555	2278007	2633058		Escherichia_phage(75.0%)	4	NA	NA
WP_167779410.1|2274555_2275407_-	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	38.6	2.9e-38
WP_167779411.1|2275504_2276533_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	42.9	8.4e-69
WP_002292883.1|2276554_2277127_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	48.6	4.1e-41
WP_002292884.1|2277140_2278007_-	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	62.5	2.2e-102
>prophage 184
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	2295357	2296635	2633058		Diachasmimorpha_longicaudata_entomopoxvirus(100.0%)	1	NA	NA
WP_002314212.1|2295357_2296635_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	28.5	2.2e-34
>prophage 185
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	2299735	2304109	2633058	tRNA	Cyanophage(50.0%)	2	NA	NA
WP_002291842.1|2299735_2301262_+	glucose-6-phosphate dehydrogenase	NA	H6WFS4	Cyanophage	35.3	8.9e-75
WP_002346313.1|2301310_2304109_-|tRNA	isoleucine--tRNA ligase	tRNA	A0A2H4UVG0	Bodo_saltans_virus	26.4	1.6e-74
>prophage 186
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	2325134	2327327	2633058		Acanthamoeba_polyphaga_moumouvirus(50.0%)	2	NA	NA
WP_002291885.1|2325134_2326472_-	exodeoxyribonuclease VII large subunit	NA	L7RDW5	Acanthamoeba_polyphaga_moumouvirus	29.0	5.1e-26
WP_002329020.1|2326472_2327327_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	A0A249XZQ2	Enterococcus_phage	38.4	1.5e-39
>prophage 187
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	2345934	2346675	2633058		Pandoravirus(100.0%)	1	NA	NA
WP_016853388.1|2345934_2346675_-	MBL fold metallo-hydrolase	NA	S4VYV9	Pandoravirus	25.4	5.6e-06
>prophage 188
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	2350317	2368445	2633058		Streptococcus_phage(40.0%)	17	NA	NA
WP_002329012.1|2350317_2351523_-	D-alanyl-lipoteichoic acid biosynthesis protein DltB	NA	A0A125RNP0	Pseudomonas_phage	30.7	5.0e-20
WP_002292354.1|2351519_2353034_-	D-alanine--poly(phosphoribitol) ligase subunit DltA	NA	A0A2K9KZV5	Tupanvirus	29.7	7.3e-45
WP_002292353.1|2353044_2353194_-	teichoic acid D-Ala incorporation-associated protein DltX	NA	NA	NA	NA	NA
WP_002292351.1|2353599_2355642_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_002310242.1|2355631_2356399_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	35.6	6.1e-32
WP_002292349.1|2356718_2358908_+	anaerobic ribonucleoside-triphosphate reductase	NA	A0A0C5KKX3	Enterococcus_phage	66.7	6.8e-286
WP_002292348.1|2359712_2360315_+	anaerobic ribonucleoside-triphosphate reductase activating protein	NA	A0A288TZV3	Enterococcus_phage	58.0	4.9e-53
WP_167779420.1|2360368_2361490_-	DNA polymerase IV	NA	NA	NA	NA	NA
WP_002292345.1|2361598_2362471_-	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	60.1	2.1e-89
WP_002288076.1|2362539_2362887_-	DNA replication initiation control protein YabA	NA	M1PFV3	Streptococcus_phage	41.1	5.1e-18
WP_002292343.1|2362879_2363704_-	stage 0 sporulation family protein	NA	NA	NA	NA	NA
WP_002292342.1|2363739_2364678_-	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	33.8	6.1e-34
WP_002292340.1|2364691_2365021_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002292339.1|2365035_2365680_-	dTMP kinase	NA	M1PSC7	Streptococcus_phage	52.6	4.2e-58
WP_002292338.1|2365743_2366340_-	recombination protein RecR	NA	NA	NA	NA	NA
WP_002329006.1|2366364_2366679_-	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_002329005.1|2366699_2368445_-	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	36.1	2.1e-48
>prophage 189
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	2392938	2408851	2633058	tRNA	Bacillus_phage(28.57%)	15	NA	NA
WP_002310226.1|2392938_2394549_-	CTP synthase	NA	A0A1J0FA14	Only_Syngen_Nebraska_virus	48.4	3.9e-145
WP_002287001.1|2395320_2396661_-	type I glutamate--ammonia ligase	NA	A0A1V0SJ53	Klosneuvirus	25.6	9.1e-07
WP_002290339.1|2396688_2397081_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002310225.1|2397309_2398539_-	GTPase HflX	NA	NA	NA	NA	NA
WP_167779425.1|2398540_2399458_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_002290344.1|2399461_2400199_-	glycerophosphodiester phosphodiesterase	NA	A0A0S2MYI4	Enterococcus_phage	35.6	6.1e-13
WP_002289403.1|2400289_2400817_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002289402.1|2400996_2401590_+	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	55.6	8.9e-55
WP_002310223.1|2401694_2402180_-	gamma carbonic anhydrase family protein	NA	NA	NA	NA	NA
WP_002310222.1|2402328_2402526_-	hypothetical protein	NA	NA	NA	NA	NA
WP_167779426.1|2402620_2404381_-	multidrug efflux ABC transporter subunit EfrB	NA	W8CYL7	Bacillus_phage	29.0	7.7e-54
WP_002314241.1|2404377_2406108_-	multidrug efflux ABC transporter subunit EfrA	NA	W8CYL7	Bacillus_phage	27.8	2.7e-43
WP_002287947.1|2406500_2406713_+	DNA-dependent RNA polymerase auxiliary subunit epsilon family protein	NA	NA	NA	NA	NA
WP_002310218.1|2406714_2408394_+	ribonuclease J	NA	NA	NA	NA	NA
WP_002294067.1|2408650_2408851_-	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	71.2	3.7e-21
>prophage 190
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	2411900	2414546	2633058	tRNA	Catovirus(100.0%)	1	NA	NA
WP_047928065.1|2411900_2414546_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0S951	Catovirus	42.9	8.8e-163
>prophage 191
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	2420246	2420807	2633058		Geobacillus_virus(100.0%)	1	NA	NA
WP_002310210.1|2420246_2420807_-	haloacid dehalogenase	NA	A0A0H3UZF4	Geobacillus_virus	45.7	1.8e-28
>prophage 192
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	2425683	2427012	2633058		Phaeocystis_globosa_virus(100.0%)	1	NA	NA
WP_002310204.1|2425683_2427012_-	aminopeptidase C	NA	R4TV59	Phaeocystis_globosa_virus	37.6	5.6e-73
>prophage 193
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	2430330	2431290	2633058	transposase	unidentified_phage(100.0%)	1	NA	NA
WP_002301399.1|2430330_2431290_+|transposase	IS30 family transposase	transposase	H7BW61	unidentified_phage	26.8	2.2e-10
>prophage 194
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	2439335	2441749	2633058		Catovirus(33.33%)	3	NA	NA
WP_070872352.1|2439335_2439920_-	peptidylprolyl isomerase	NA	A0A1V0S9I2	Catovirus	44.0	1.2e-27
WP_002310191.1|2440130_2441129_+	NAD(P)/FAD-dependent oxidoreductase	NA	Q9JRK7	Streptococcus_phage	54.1	2.6e-30
WP_002290997.1|2441239_2441749_+	phosphatidylglycerophosphatase A	NA	G3MBC5	Bacillus_virus	55.4	4.5e-39
>prophage 195
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	2460344	2461007	2633058		Bacillus_virus(100.0%)	1	NA	NA
WP_047928053.1|2460344_2461007_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	9.4e-21
>prophage 196
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	2467179	2468061	2633058		Bacillus_phage(100.0%)	1	NA	NA
WP_002310162.1|2467179_2468061_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	50.3	2.8e-73
>prophage 197
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	2472815	2473460	2633058		Apis_mellifera_filamentous_virus(100.0%)	1	NA	NA
WP_002335193.1|2472815_2473460_+	chitin-binding protein	NA	A0A0K1Y848	Apis_mellifera_filamentous_virus	33.5	2.0e-12
>prophage 198
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	2482860	2488981	2633058		Bacillus_phage(66.67%)	5	NA	NA
WP_002310151.1|2482860_2484576_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.9	1.3e-50
WP_167779431.1|2484578_2486342_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	30.4	8.5e-45
WP_002310149.1|2486381_2486918_-	folate family ECF transporter S component	NA	NA	NA	NA	NA
WP_002310148.1|2487240_2487663_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_002310147.1|2487871_2488981_+	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA	Q6GZ03	Mycoplasma_phage	33.0	2.0e-20
>prophage 199
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	2494972	2501766	2633058	tRNA	Bacillus_virus(40.0%)	6	NA	NA
WP_167779432.1|2494972_2496982_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	38.3	1.4e-96
WP_070676295.1|2497250_2497529_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002293580.1|2497626_2498448_+	NUDIX hydrolase	NA	G3MA14	Bacillus_virus	32.3	3.5e-25
WP_002320387.1|2498730_2499741_-	helix-turn-helix domain-containing protein	NA	A0A288TXV8	Enterococcus_phage	42.2	4.3e-57
WP_167779433.1|2499752_2500706_-	ATP-binding cassette domain-containing protein	NA	G3M9Y6	Bacillus_virus	32.6	1.1e-17
WP_002310131.1|2500695_2501766_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.5	9.8e-20
>prophage 200
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	2509256	2515420	2633058		Mycobacterium_phage(33.33%)	4	NA	NA
WP_002310128.1|2509256_2511704_-	DNA translocase FtsK	NA	A0A218M9A2	Mycobacterium_phage	50.7	8.1e-86
WP_167779435.1|2511892_2513329_-	glycoside hydrolase family 1 protein	NA	A0A0B5JD41	Pandoravirus	30.0	1.1e-50
WP_002310125.1|2513950_2514766_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_002314089.1|2514784_2515420_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.0	2.4e-26
>prophage 201
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	2522452	2528694	2633058		Moumouvirus(25.0%)	6	NA	NA
WP_002314091.1|2522452_2523400_-	alpha/beta hydrolase	NA	M1PGN2	Moumouvirus	44.1	1.0e-65
WP_167779436.1|2523572_2524817_-	serine hydroxymethyltransferase	NA	A0A219Y950	Aeromonas_phage	54.5	2.8e-103
WP_002320384.1|2524982_2526008_-	threonylcarbamoyl-AMP synthase	NA	S4VW33	Pandoravirus	43.0	1.0e-58
WP_002310113.1|2526201_2527041_-	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_002291519.1|2527033_2528107_-	peptide chain release factor 1	NA	NA	NA	NA	NA
WP_002291517.1|2528109_2528694_-	thymidine kinase	NA	A0A1W6JJU6	Lactococcus_phage	52.6	1.6e-48
>prophage 202
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	2536475	2537627	2633058		Micromonas_sp._RCC1109_virus(100.0%)	1	NA	NA
WP_002310100.1|2536475_2537627_-	mannitol-1-phosphate 5-dehydrogenase	NA	E5EQS6	Micromonas_sp._RCC1109_virus	30.0	2.2e-17
>prophage 203
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	2550034	2553651	2633058		Bacillus_phage(100.0%)	2	NA	NA
WP_002314102.1|2550034_2551927_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	31.1	3.5e-60
WP_002314103.1|2551923_2553651_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	5.6e-49
>prophage 204
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	2561356	2562517	2633058		Streptococcus_phage(100.0%)	1	NA	NA
WP_167779441.1|2561356_2562517_-	hydroxyacid dehydrogenase	NA	M1NSB9	Streptococcus_phage	36.1	2.5e-61
>prophage 205
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	2577777	2580086	2633058		Bacillus_virus(100.0%)	2	NA	NA
WP_002310056.1|2577777_2578602_-	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	56.4	3.0e-77
WP_002314112.1|2578613_2580086_-	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	45.4	7.0e-109
>prophage 206
NZ_CP050648	Enterococcus faecium strain BIOPOP-3 ALE chromosome, complete genome	2633058	2596216	2632949	2633058	portal,tail,integrase,terminase,plate,capsid,holin	Enterococcus_phage(44.12%)	55	2592826:2592844	2633039:2633057
2592826:2592844	attL	TACATCATACCGCCCATCA	NA	NA	NA	NA
WP_167779454.1|2596216_2597236_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A1G5SA77	Enterococcus_phage	68.0	2.1e-59
WP_002334690.1|2597246_2597444_-|holin	holin	holin	A0A0S2MYF6	Enterococcus_phage	82.8	8.6e-23
WP_167779455.1|2597461_2597761_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002290625.1|2597798_2597936_-	XkdX family protein	NA	NA	NA	NA	NA
WP_167779456.1|2597937_2598384_-	hypothetical protein	NA	NA	NA	NA	NA
WP_167779457.1|2598395_2600567_-|plate	BppU family phage baseplate upper protein	plate	A0A060AI60	Enterococcus_phage	38.6	6.4e-50
WP_167779458.1|2600582_2601341_-	hypothetical protein	NA	NA	NA	NA	NA
WP_167779459.1|2601354_2603139_-|plate	BppU family phage baseplate upper protein	plate	Q9AZX4	Lactococcus_phage	43.6	8.3e-40
WP_167779460.1|2603113_2605960_-	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A1P8BMB8	Lactococcus_phage	61.3	0.0e+00
WP_094889492.1|2605956_2606724_-|tail	phage tail protein	tail	D7RWD9	Brochothrix_phage	45.1	6.9e-60
WP_167779461.1|2606756_2609579_-|tail	phage tail tape measure protein	tail	Q9G097	Lactococcus_phage	71.0	4.0e-169
WP_002332769.1|2609595_2609856_-	hypothetical protein	NA	A0A2P1JTY6	Anoxybacillus_phage	50.0	1.6e-05
WP_002293018.1|2609936_2610305_-	hypothetical protein	NA	Q77RZ7	Lactococcus_phage	54.8	8.6e-24
WP_002293017.1|2610350_2610863_-|tail	phage major tail protein, TP901-1 family	tail	D7RWD5	Brochothrix_phage	66.3	2.2e-57
WP_167779462.1|2610873_2611266_-|capsid	phage capsid protein	capsid	Q77K20	Lactococcus_phage	75.4	1.8e-48
WP_167779463.1|2611262_2611634_-	HK97 gp10 family phage protein	NA	Q77K21	Lactococcus_phage	51.2	1.2e-28
WP_002321075.1|2611630_2611945_-	hypothetical protein	NA	A0A097BYB2	Enterococcus_phage	56.9	3.2e-27
WP_029485331.1|2611941_2612271_-	hypothetical protein	NA	A0A097BY55	Enterococcus_phage	64.2	1.5e-32
WP_002321720.1|2612286_2612448_-	hypothetical protein	NA	C9E2K1	Enterococcus_phage	66.0	8.9e-10
WP_073490201.1|2612564_2613452_-|capsid	phage major capsid protein	capsid	A0A1B1V000	Enterococcus_phage	77.0	2.3e-131
WP_167779464.1|2613466_2614051_-	DUF4355 domain-containing protein	NA	A0A0S2MYF0	Enterococcus_phage	55.6	2.2e-26
WP_167779465.1|2614189_2614603_-	hypothetical protein	NA	NA	NA	NA	NA
WP_167779466.1|2614607_2615561_-|capsid	minor capsid protein	capsid	A0A1L2JXH2	Streptococcus_phage	61.3	9.7e-104
WP_142432306.1|2615565_2617065_-|portal	phage portal protein	portal	A0A097BY86	Enterococcus_phage	79.1	2.8e-222
WP_167779467.1|2617077_2618376_-|terminase	PBSX family phage terminase large subunit	terminase	A0A1B1UZZ1	Enterococcus_phage	88.4	1.4e-230
WP_002311445.1|2618368_2618824_-|terminase	terminase small subunit	terminase	D7RWC4	Brochothrix_phage	41.4	2.7e-19
WP_167779468.1|2618849_2619074_-	hypothetical protein	NA	NA	NA	NA	NA
WP_047937481.1|2619080_2619293_-	hypothetical protein	NA	D2IZF7	Enterococcus_phage	61.7	1.3e-08
WP_002318889.1|2619345_2620053_-	hypothetical protein	NA	NA	NA	NA	NA
WP_162831952.1|2620723_2620894_+	hypothetical protein	NA	D2IZX0	Enterococcus_phage	88.7	5.0e-19
WP_086283875.1|2621014_2621428_-	hypothetical protein	NA	NA	NA	NA	NA
WP_167779469.1|2621686_2622073_-	hypothetical protein	NA	O34053	Streptococcus_phage	53.4	7.1e-29
WP_010726209.1|2622085_2622499_-	ArpU family phage transcriptional regulator	NA	C9E2P5	Enterococcus_phage	79.6	3.6e-55
WP_167779470.1|2622575_2622872_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080344811.1|2622868_2623363_-	hypothetical protein	NA	A0A0D3MVS9	Staphylococcus_phage	57.0	3.2e-26
WP_047937477.1|2623359_2623662_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002290675.1|2623664_2623826_-	hypothetical protein	NA	NA	NA	NA	NA
WP_167779471.1|2623822_2624125_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002301521.1|2624117_2624282_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002293146.1|2624286_2624556_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002340818.1|2624567_2625314_-	helix-turn-helix domain-containing protein	NA	F8J194	Lactobacillus_virus	59.6	1.9e-30
WP_167779472.1|2625317_2626004_-	hypothetical protein	NA	C9E2N1	Enterococcus_phage	69.5	2.4e-88
WP_002390666.1|2626009_2626756_-	DUF1071 domain-containing protein	NA	A0A1X9IGE5	Lactococcus_phage	47.5	6.4e-42
WP_104889543.1|2626748_2627090_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002301528.1|2627239_2627413_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002305400.1|2627409_2627598_-	hypothetical protein	NA	D2IZW5	Enterococcus_phage	60.3	7.4e-08
WP_167779473.1|2627618_2627903_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002318516.1|2627950_2628250_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002326799.1|2628209_2628965_-	hypothetical protein	NA	A0A1S5SE89	Streptococcus_phage	70.1	1.8e-92
WP_002321800.1|2628979_2629171_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002326798.1|2629462_2629786_+	helix-turn-helix transcriptional regulator	NA	A0A2P0ZLA1	Lactobacillus_phage	40.2	1.3e-15
WP_167779474.1|2629803_2630235_+	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA	NA
WP_010722186.1|2630367_2630877_+	hypothetical protein	NA	A0A0D4DCT6	Staphylococcus_phage	45.6	8.2e-33
WP_167779475.1|2631004_2631706_+	hypothetical protein	NA	NA	NA	NA	NA
WP_029743868.1|2631800_2632949_+|integrase	site-specific integrase	integrase	A0A1B1IMP1	Lactococcus_phage	48.4	5.1e-91
2633039:2633057	attR	TACATCATACCGCCCATCA	NA	NA	NA	NA
>prophage 1
NZ_CP050649	Enterococcus faecium strain BIOPOP-3 ALE plasmid pBIOPOP-3_ALE	141022	441	35209	141022	transposase,integrase,bacteriocin,protease	Bacillus_phage(33.33%)	32	391:416	18859:18884
391:416	attL	GGGAGCGTCAATAATTTTGTGTAAAT	NA	NA	NA	NA
WP_167779504.1|441_1611_-|transposase	IS256 family transposase	transposase	NA	NA	NA	NA
WP_002295761.1|3079_3634_+|integrase	tyrosine-type recombinase/integrase	integrase	W8CYP1	Bacillus_phage	46.1	8.6e-36
WP_002295762.1|3696_4782_-	tyrosine recombinase XerS	NA	NA	NA	NA	NA
WP_002295764.1|5103_5337_+	addiction module antitoxin	NA	NA	NA	NA	NA
WP_002307501.1|5333_5741_+	type II toxin-antitoxin system death-on-curing family toxin	NA	A0A0N9SKD8	Staphylococcus_phage	39.8	8.0e-15
WP_002295345.1|6191_6701_-	hypothetical protein	NA	NA	NA	NA	NA
WP_167779505.1|6816_7978_+|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	50.5	8.6e-78
WP_002342366.1|8084_8327_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_002318453.1|8540_8654_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002311027.1|8728_9493_-	iron export ABC transporter permease subunit FetB	NA	NA	NA	NA	NA
WP_002307505.1|9489_10143_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.0	5.8e-23
WP_002307506.1|10226_10649_-	cupin domain-containing protein	NA	Q2I8C5	Bacillus_phage	58.5	2.4e-38
WP_167779506.1|11239_12409_+|transposase	IS256 family transposase	transposase	NA	NA	NA	NA
WP_002293180.1|12467_12764_-|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
WP_100067862.1|12823_13366_-	ATP-binding cassette domain-containing protein	NA	W8CYL7	Bacillus_phage	42.0	2.2e-23
WP_128440552.1|13448_14574_+|transposase	IS3 family transposase	transposase	A0A1P8CWQ3	Bacillus_phage	53.7	8.6e-75
WP_002292906.1|14944_15358_+	Hsp20/alpha crystallin family protein	NA	NA	NA	NA	NA
WP_080001472.1|15494_15755_+	hypothetical protein	NA	NA	NA	NA	NA
WP_025479026.1|15872_16178_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002362389.1|16251_17211_+|transposase	IS30-like element IS6770 family transposase	transposase	W5R8L2	Staphylococcus_phage	36.1	1.2e-37
WP_002329891.1|17647_18832_+|transposase	IS256 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	24.5	2.9e-28
WP_002292444.1|18993_20424_+	hypothetical protein	NA	NA	NA	NA	NA
18859:18884	attR	ATTTACACAAAATTATTGACGCTCCC	NA	NA	NA	NA
WP_167779507.1|20420_21017_-	recombinase family protein	NA	A0A1J1J8Z4	Escherichia_phage	32.1	4.3e-09
WP_167779508.1|21033_22160_-|transposase	IS3 family transposase	transposase	A0A1P8CWQ3	Bacillus_phage	54.1	5.0e-75
WP_167779509.1|22437_24705_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	30.7	1.4e-124
WP_132981516.1|24814_25045_+|transposase	transposase	transposase	Q6J1X3	Lactobacillus_phage	34.6	3.2e-05
WP_167779510.1|25165_25744_-	DUF536 domain-containing protein	NA	NA	NA	NA	NA
WP_167779511.1|25736_26672_-	replication initiation protein	NA	NA	NA	NA	NA
WP_167779512.1|26995_28158_-|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	50.5	9.5e-77
WP_167779526.1|28816_29080_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002314345.1|31880_32072_-	hypothetical protein	NA	NA	NA	NA	NA
WP_167779513.1|33094_35209_-|protease	ATP-dependent Clp protease ATP-binding subunit	protease	K4FB40	Cronobacter_phage	39.0	1.4e-118
