assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_012044475.1_ASM1204447v1	NZ_CP050691	Staphylococcus aureus strain PMB196-1 chromosome, complete genome	1	8728-8813	1	CRISPRCasFinder	no		RT,WYL,cas3,DEDDh,DinG,csa3	Orphan	CCAACTGATTTTTGCGTATCATTAGT	26	0	0	NA	NA	NA	1	1	Orphan	RT,WYL,cas3,DEDDh,DinG,csa3	NA,NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|711aa|up_2|NZ_CP050691.1_4420_6553_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|up_1|NZ_CP050691.1_6564_6999_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|up_0|NZ_CP050691.1_6998_8105_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|452aa|down_0|NZ_CP050691.1_16146_17502_-	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|311aa|down_1|NZ_CP050691.1_17528_18461_-	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|270aa|down_2|NZ_CP050691.1_18462_19272_-	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|303aa|down_3|NZ_CP050691.1_19460_20369_-	cd09989, Arginase, Arginase family	NA|355aa|down_4|NZ_CP050691.1_26609_27674_-	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|481aa|down_5|NZ_CP050691.1_27821_29264_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|158aa|down_6|NZ_CP050691.1_29586_30060_-	pfam17080, SepA, Multidrug Resistance efflux pump	NA|448aa|down_7|NZ_CP050691.1_30158_31502_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|228aa|down_8|NZ_CP050691.1_31678_32362_-	COG1272, COG1272, Predicted membrane protein, hemolysin III homolog [General function prediction only]	NA|396aa|down_9|NZ_CP050691.1_32380_33568_-	cd04193, UDPGlcNAc_PPase, UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc
GCF_012044475.1_ASM1204447v1	NZ_CP050691	Staphylococcus aureus strain PMB196-1 chromosome, complete genome	2	116771-116851	2	CRISPRCasFinder	no		RT,WYL,cas3,DEDDh,DinG,csa3	Orphan	TCTATGTTGGGGCCCCGCCAACTTG	25	1	14	116796-116826|116796-116826|116796-116826|116796-116826|116796-116826|116796-116826|116796-116826|116796-116826|116796-116826|116796-116826|116796-116826|116796-116826|116796-116826|116796-116826	NZ_CP050691.1_1379662-1379692|NZ_CP050691.1_1379718-1379748|NZ_CP050691.1_105995-106025|NZ_CP050691.1_281916-281946|NZ_CP050691.1_637369-637399|NZ_CP050691.1_1379774-1379804|NZ_CP050691.1_1416227-1416257|NZ_CP050691.1_1580653-1580683|NZ_CP050691.1_1976280-1976310|NZ_CP050691.1_935393-935363|NZ_CP050691.1_1202317-1202287|NZ_CP050691.1_1681782-1681752|NZ_CP050691.1_1887879-1887849|NZ_CP050691.1_2172372-2172342	NA	1	1	Orphan	RT,WYL,cas3,DEDDh,DinG,csa3	NA|55aa|up_9|NZ_CP050691.1_107304_107469_+,NA|106aa|up_8|NZ_CP050691.1_107713_108031_+,NA|84aa|up_5|NZ_CP050691.1_113152_113404_+,NA|62aa|up_0|NZ_CP050691.1_116543_116729_+,NA	NA|55aa|up_9|NZ_CP050691.1_107304_107469_+	NA	NA|106aa|up_8|NZ_CP050691.1_107713_108031_+	NA	NA|1056aa|up_7|NZ_CP050691.1_108214_111382_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|NZ_CP050691.1_111498_112764_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|NZ_CP050691.1_113152_113404_+	NA	NA|255aa|up_4|NZ_CP050691.1_113395_114160_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|NZ_CP050691.1_114321_114762_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|NZ_CP050691.1_114754_115966_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|NZ_CP050691.1_116067_116418_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|62aa|up_0|NZ_CP050691.1_116543_116729_+	NA	NA|341aa|down_0|NZ_CP050691.1_116994_118017_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NZ_CP050691.1_118036_118636_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NZ_CP050691.1_118642_118876_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NZ_CP050691.1_118881_119328_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NZ_CP050691.1_119341_119827_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NZ_CP050691.1_119823_121083_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NZ_CP050691.1_121145_121640_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NZ_CP050691.1_121641_122148_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NZ_CP050691.1_122178_123183_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|NZ_CP050691.1_123352_123958_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
GCF_012044475.1_ASM1204447v1	NZ_CP050691	Staphylococcus aureus strain PMB196-1 chromosome, complete genome	3	735858-735942	3	CRISPRCasFinder	no		RT,WYL,cas3,DEDDh,DinG,csa3	Orphan	TTCTACAGGCAATGCAAGTTGGGGTG	26	1	2	735884-735916|735884-735916	NZ_CP050691.1_1887891-1887923|NZ_CP050691.1_1976268-1976236	NA	1	1	Orphan	RT,WYL,cas3,DEDDh,DinG,csa3	NA|402aa|up_9|NZ_CP050691.1_725003_726209_+,NA|68aa|down_0|NZ_CP050691.1_736003_736207_-	NA|402aa|up_9|NZ_CP050691.1_725003_726209_+	NA	NA|402aa|up_8|NZ_CP050691.1_726209_727415_+	cd03794, GT4_WbuB-like, Escherichia coli WbuB and similar proteins	NA|186aa|up_7|NZ_CP050691.1_727425_727983_+	COG2148, WcaJ, Sugar transferases involved in lipopolysaccharide synthesis [Cell envelope biogenesis, outer membrane]	NA|296aa|up_6|NZ_CP050691.1_727982_728870_+	cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, subgroup 4, extended (e) SDRs	NA|421aa|up_5|NZ_CP050691.1_728923_730186_+	COG0677, WecC, UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]	NA|382aa|up_4|NZ_CP050691.1_730262_731408_+	COG0381, WecB, UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]	NA|109aa|up_3|NZ_CP050691.1_731472_731799_-	PRK13313, PRK13313, staphylobilin-forming heme oxygenase IsdI	NA|128aa|up_2|NZ_CP050691.1_731805_732189_-	pfam04304, DUF454, Protein of unknown function (DUF454)	NA|496aa|up_1|NZ_CP050691.1_732615_734103_+	cd07117, ALDH_StaphAldA1, Uncharacterized Staphylococcus aureus AldA1 (SACOL0154) aldehyde dehydrogenase-like	NA|320aa|up_0|NZ_CP050691.1_734749_735709_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|68aa|down_0|NZ_CP050691.1_736003_736207_-	NA	NA|171aa|down_1|NZ_CP050691.1_736385_736898_+	pfam14026, DUF4242, Protein of unknown function (DUF4242)	NA|247aa|down_2|NZ_CP050691.1_737239_737980_+	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|324aa|down_3|NZ_CP050691.1_737993_738965_+	cd13553, PBP2_NrtA_CpmA_like, Substrate binding domain of ABC-type nitrate/bicarbonate transporters, a member of the type 2 periplasmic binding fold superfamily	NA|254aa|down_4|NZ_CP050691.1_738961_739723_+	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|344aa|down_5|NZ_CP050691.1_739735_740767_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|120aa|down_6|NZ_CP050691.1_740983_741343_+	COG5609, COG5609, Uncharacterized conserved protein [Function unknown]	NA|342aa|down_7|NZ_CP050691.1_741516_742542_+	PRK07574, PRK07574, NAD-dependent formate dehydrogenase	NA|417aa|down_8|NZ_CP050691.1_742927_744178_+	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|2392aa|down_9|NZ_CP050691.1_744624_751800_+	PRK12467, PRK12467, peptide synthase; Provisional
GCF_012044475.1_ASM1204447v1	NZ_CP050691	Staphylococcus aureus strain PMB196-1 chromosome, complete genome	4	974102-974203	4	CRISPRCasFinder	no		RT,WYL,cas3,DEDDh,DinG,csa3	Orphan	TTATGAATTGAGTATTAAATTTG	23	0	0	NA	NA	NA	1	1	Orphan	RT,WYL,cas3,DEDDh,DinG,csa3	NA|70aa|up_8|NZ_CP050691.1_965661_965871_-,NA|128aa|up_6|NZ_CP050691.1_966695_967079_-,NA|33aa|up_0|NZ_CP050691.1_973326_973425_+,NA|221aa|down_1|NZ_CP050691.1_975293_975956_-,NA|179aa|down_7|NZ_CP050691.1_982047_982584_-	NA|84aa|up_9|NZ_CP050691.1_965371_965623_+	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|70aa|up_8|NZ_CP050691.1_965661_965871_-	NA	NA|194aa|up_7|NZ_CP050691.1_966048_966630_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|128aa|up_6|NZ_CP050691.1_966695_967079_-	NA	NA|209aa|up_5|NZ_CP050691.1_967348_967975_-	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|508aa|up_4|NZ_CP050691.1_968418_969942_-	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|190aa|up_3|NZ_CP050691.1_969957_970527_-	TIGR03137, AhpC, peroxiredoxin	NA|252aa|up_2|NZ_CP050691.1_971018_971774_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|463aa|up_1|NZ_CP050691.1_971853_973242_-	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|33aa|up_0|NZ_CP050691.1_973326_973425_+	NA	NA|319aa|down_0|NZ_CP050691.1_974219_975176_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|221aa|down_1|NZ_CP050691.1_975293_975956_-	NA	NA|136aa|down_2|NZ_CP050691.1_976098_976506_-	pfam11181, YflT, Heat induced stress protein YflT	NA|193aa|down_3|NZ_CP050691.1_977018_977597_+	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|423aa|down_4|NZ_CP050691.1_977596_978865_+	TIGR03173, pbuX, xanthine permease	NA|489aa|down_5|NZ_CP050691.1_978902_980369_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|514aa|down_6|NZ_CP050691.1_980393_981935_+	PRK00074, guaA, GMP synthase; Reviewed	NA|179aa|down_7|NZ_CP050691.1_982047_982584_-	NA	NA|235aa|down_8|NZ_CP050691.1_982975_983680_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|91aa|down_9|NZ_CP050691.1_984078_984351_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
GCF_012044475.1_ASM1204447v1	NZ_CP050691	Staphylococcus aureus strain PMB196-1 chromosome, complete genome	5	1366978-1367056	5	CRISPRCasFinder	no	cas3	RT,WYL,cas3,DEDDh,DinG,csa3	Unclear	TGTAGAATTTCTTTTCGAAATTCT	24	1	2	1367002-1367032|1367002-1367032	NZ_CP050691.1_859085-859055|NZ_CP050691.1_859030-859000	NA	1	1	Unclear	RT,WYL,cas3,DEDDh,DinG,csa3	NA|35aa|up_7|NZ_CP050691.1_1357854_1357959_+,NA|36aa|up_5|NZ_CP050691.1_1359391_1359499_+,NA	NA|191aa|up_9|NZ_CP050691.1_1354295_1354868_+	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]	NA|844aa|up_8|NZ_CP050691.1_1355281_1357813_+	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|35aa|up_7|NZ_CP050691.1_1357854_1357959_+	NA	NA|370aa|up_6|NZ_CP050691.1_1358127_1359238_+	PRK00578, prfB, peptide chain release factor 2; Validated	NA|36aa|up_5|NZ_CP050691.1_1359391_1359499_+	NA	NA|280aa|up_4|NZ_CP050691.1_1359646_1360486_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_3|NZ_CP050691.1_1360659_1361310_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_2|NZ_CP050691.1_1361306_1361543_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_1|NZ_CP050691.1_1361811_1363797_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_0|NZ_CP050691.1_1363804_1366651_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|down_0|NZ_CP050691.1_1367314_1368247_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|down_1|NZ_CP050691.1_1368252_1369092_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|down_2|NZ_CP050691.1_1369099_1369585_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|down_3|NZ_CP050691.1_1369592_1371032_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|down_4|NZ_CP050691.1_1371098_1372034_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_5|NZ_CP050691.1_1372860_1373772_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_6|NZ_CP050691.1_1373768_1374764_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_7|NZ_CP050691.1_1374874_1375819_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_8|NZ_CP050691.1_1376382_1376970_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_9|NZ_CP050691.1_1377212_1378115_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
GCF_012044475.1_ASM1204447v1	NZ_CP050691	Staphylococcus aureus strain PMB196-1 chromosome, complete genome	6	1372378-1372593	1	CRT	no	cas3	RT,WYL,cas3,DEDDh,DinG,csa3	Unclear	TGTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAA	40	3	45	1372418-1372436|1372418-1372436|1372418-1372436|1372418-1372436|1372418-1372436|1372418-1372436|1372418-1372436|1372418-1372436|1372477-1372495|1372477-1372495|1372477-1372495|1372477-1372495|1372477-1372495|1372477-1372495|1372477-1372495|1372477-1372495|1372477-1372495|1372477-1372495|1372477-1372495|1372477-1372495|1372477-1372495|1372536-1372553|1372536-1372553|1372536-1372553|1372536-1372553|1372536-1372553|1372536-1372553|1372536-1372553|1372536-1372553|1372536-1372553|1372536-1372553|1372536-1372553|1372536-1372553|1372536-1372553|1372536-1372553|1372536-1372553|1372536-1372553|1372536-1372553|1372536-1372553|1372536-1372553|1372536-1372553|1372536-1372553|1372536-1372553|1372536-1372553|1372536-1372553	NZ_CP050691.1_106009-106027|NZ_CP050691.1_935379-935361|NZ_CP050691.1_1202303-1202285|NZ_CP050691.1_1580667-1580685|NZ_CP050691.1_1681768-1681750|NZ_CP050691.1_1887865-1887847|NZ_CP050691.1_1976294-1976312|NZ_CP050691.1_2483006-2483024|NZ_CP050691.1_1372594-1372612|NZ_CP050691.1_1379846-1379864|NZ_CP050691.1_1326091-1326073|NZ_CP050691.1_1326313-1326295|NZ_CP050691.1_1887923-1887905|NZ_CP050691.1_105951-105969|NZ_CP050691.1_2484407-2484425|NZ_CP050691.1_2595574-2595592|NZ_CP050691.1_2595691-2595709|NZ_CP050691.1_1339929-1339911|NZ_CP050691.1_1937877-1937895|NZ_CP050691.1_1976236-1976254|NZ_CP050691.1_2482950-2482968|NZ_CP050691.1_735857-735840|NZ_CP050691.1_859102-859085|NZ_CP050691.1_1202244-1202227|NZ_CP050691.1_1325137-1325154|NZ_CP050691.1_1415973-1415990|NZ_CP050691.1_1465172-1465155|NZ_CP050691.1_1580610-1580627|NZ_CP050691.1_1677641-1677624|NZ_CP050691.1_1887806-1887789|NZ_CP050691.1_2157763-2157780|NZ_CP050691.1_2172300-2172283|NZ_CP050691.1_2336388-2336371|NZ_CP050691.1_2484349-2484366|NZ_CP050691.1_116755-116772|NZ_CP050691.1_859047-859030|NZ_CP050691.1_1484685-1484702|NZ_CP050691.1_1681825-1681808|NZ_CP050691.1_1892272-1892289|NZ_CP050691.1_1937763-1937780|NZ_CP050691.1_2192024-2192041|NZ_CP050691.1_2493699-2493716|NZ_CP050691.1_1339984-1339967|NZ_CP050691.1_1681880-1681863|NZ_CP050691.1_2428713-2428730	NA	3	3	Unclear	RT,WYL,cas3,DEDDh,DinG,csa3	NA,NA	NA|280aa|up_9|NZ_CP050691.1_1359646_1360486_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_8|NZ_CP050691.1_1360659_1361310_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_7|NZ_CP050691.1_1361306_1361543_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_6|NZ_CP050691.1_1361811_1363797_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_5|NZ_CP050691.1_1363804_1366651_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|up_4|NZ_CP050691.1_1367314_1368247_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|up_3|NZ_CP050691.1_1368252_1369092_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|up_2|NZ_CP050691.1_1369099_1369585_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|up_1|NZ_CP050691.1_1369592_1371032_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|up_0|NZ_CP050691.1_1371098_1372034_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_0|NZ_CP050691.1_1372860_1373772_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_1|NZ_CP050691.1_1373768_1374764_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_2|NZ_CP050691.1_1374874_1375819_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_3|NZ_CP050691.1_1376382_1376970_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_4|NZ_CP050691.1_1377212_1378115_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|210aa|down_5|NZ_CP050691.1_1378817_1379447_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|338aa|down_6|NZ_CP050691.1_1380259_1381273_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|337aa|down_7|NZ_CP050691.1_1381325_1382336_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|397aa|down_8|NZ_CP050691.1_1382474_1383665_+	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|254aa|down_9|NZ_CP050691.1_1383786_1384548_+	PRK00042, tpiA, triosephosphate isomerase; Provisional
GCF_012044475.1_ASM1204447v1	NZ_CP050691	Staphylococcus aureus strain PMB196-1 chromosome, complete genome	7	1415891-1415972	6	CRISPRCasFinder	no		RT,WYL,cas3,DEDDh,DinG,csa3	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	1	1	1415915-1415948	NZ_CP050691.1_1887923-1887890	NA	1	1	Orphan	RT,WYL,cas3,DEDDh,DinG,csa3	NA|38aa|up_1|NZ_CP050691.1_1414793_1414907_+,NA	NA|206aa|up_9|NZ_CP050691.1_1409647_1410265_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_8|NZ_CP050691.1_1410419_1410914_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_7|NZ_CP050691.1_1411312_1411735_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_6|NZ_CP050691.1_1411882_1412599_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_5|NZ_CP050691.1_1412681_1413221_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_4|NZ_CP050691.1_1413371_1413692_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_3|NZ_CP050691.1_1413835_1414192_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_2|NZ_CP050691.1_1414349_1414730_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|38aa|up_1|NZ_CP050691.1_1414793_1414907_+	NA	NA|293aa|up_0|NZ_CP050691.1_1414908_1415787_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|129aa|down_0|NZ_CP050691.1_1416583_1416970_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|NZ_CP050691.1_1416962_1417259_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|NZ_CP050691.1_1417508_1418534_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|NZ_CP050691.1_1418526_1419222_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|NZ_CP050691.1_1419239_1420061_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|65aa|down_5|NZ_CP050691.1_1420414_1420609_+	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|284aa|down_6|NZ_CP050691.1_1420842_1421694_-	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|254aa|down_7|NZ_CP050691.1_1422021_1422783_+	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|436aa|down_8|NZ_CP050691.1_1422880_1424188_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|417aa|down_9|NZ_CP050691.1_1424293_1425544_+	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily
GCF_012044475.1_ASM1204447v1	NZ_CP050691	Staphylococcus aureus strain PMB196-1 chromosome, complete genome	8	1677720-1677923	1	PILER-CR	no		RT,WYL,cas3,DEDDh,DinG,csa3	Orphan	GGCGGGGCCCAACACAGAAGCTGGCGAAAAGTCAG	35	1	1	1677755-1677802	NZ_CP050691.1_2602868-2602821	NA	2	2	Orphan	RT,WYL,cas3,DEDDh,DinG,csa3	NA|56aa|up_5|NZ_CP050691.1_1673397_1673565_+,NA|169aa|up_2|NZ_CP050691.1_1675527_1676034_+,NA|62aa|down_0|NZ_CP050691.1_1678111_1678297_-,NA|78aa|down_1|NZ_CP050691.1_1678918_1679152_-,NA|49aa|down_3|NZ_CP050691.1_1681260_1681407_+,NA|75aa|down_4|NZ_CP050691.1_1681363_1681588_+	NA|272aa|up_9|NZ_CP050691.1_1670323_1671139_+	PRK08640, sdhB, succinate dehydrogenase iron-sulfur subunit; Reviewed	NA|267aa|up_8|NZ_CP050691.1_1671374_1672175_+	PRK00865, PRK00865, glutamate racemase; Provisional	NA|196aa|up_7|NZ_CP050691.1_1672186_1672774_+	PRK14822, PRK14822, XTP/dITP diphosphatase	NA|168aa|up_6|NZ_CP050691.1_1672766_1673270_+	COG0622, COG0622, Predicted phosphoesterase [General function prediction only]	NA|56aa|up_5|NZ_CP050691.1_1673397_1673565_+	NA	NA|110aa|up_4|NZ_CP050691.1_1673758_1674088_+	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|134aa|up_3|NZ_CP050691.1_1674456_1674858_-	PRK13033, PRK13033, formyl peptide receptor-like 1 inhibitory protein; Reviewed	NA|169aa|up_2|NZ_CP050691.1_1675527_1676034_+	NA	NA|166aa|up_1|NZ_CP050691.1_1676293_1676791_+	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|117aa|up_0|NZ_CP050691.1_1676940_1677291_+	pfam11546, CompInhib_SCIN, Staphylococcal complement inhibitor SCIN	NA|62aa|down_0|NZ_CP050691.1_1678111_1678297_-	NA	NA|78aa|down_1|NZ_CP050691.1_1678918_1679152_-	NA	NA|320aa|down_2|NZ_CP050691.1_1679628_1680588_-	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|49aa|down_3|NZ_CP050691.1_1681260_1681407_+	NA	NA|75aa|down_4|NZ_CP050691.1_1681363_1681588_+	NA	NA|239aa|down_5|NZ_CP050691.1_1682077_1682794_-	PRK13350, PRK13350, superantigen-like protein; Reviewed	NA|242aa|down_6|NZ_CP050691.1_1682901_1683627_-	PRK13349, PRK13349, superantigen-like protein; Reviewed	NA|242aa|down_7|NZ_CP050691.1_1683721_1684447_-	PRK13043, PRK13043, superantigen-like protein; Reviewed	NA|334aa|down_8|NZ_CP050691.1_1684884_1685886_+	PRK04284, PRK04284, ornithine carbamoyltransferase; Provisional	NA|311aa|down_9|NZ_CP050691.1_1685908_1686841_+	PRK12353, PRK12353, putative amino acid kinase; Reviewed
GCF_012044475.1_ASM1204447v1	NZ_CP050691	Staphylococcus aureus strain PMB196-1 chromosome, complete genome	9	2157678-2157762	7	CRISPRCasFinder	no		RT,WYL,cas3,DEDDh,DinG,csa3	Orphan	CACCCCAACTTGCATTGTCTGTAGAA	26	1	1	2157704-2157736	NZ_CP050691.1_1887923-1887891	NA	1	1	Orphan	RT,WYL,cas3,DEDDh,DinG,csa3	NA,NA	NA|228aa|up_9|NZ_CP050691.1_2146887_2147571_-	COG1030, NfeD, Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]	NA|59aa|up_8|NZ_CP050691.1_2147814_2147991_-	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|449aa|up_7|NZ_CP050691.1_2148283_2149630_-	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]	NA|251aa|up_6|NZ_CP050691.1_2149636_2150389_-	COG1385, COG1385, Uncharacterized protein conserved in bacteria [Function unknown]	NA|313aa|up_5|NZ_CP050691.1_2150390_2151329_-	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	NA|380aa|up_4|NZ_CP050691.1_2151332_2152472_-	PRK14280, PRK14280, molecular chaperone DnaJ	NA|611aa|up_3|NZ_CP050691.1_2152607_2154440_-	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|209aa|up_2|NZ_CP050691.1_2154508_2155135_-	PRK14140, PRK14140, heat shock protein GrpE; Provisional	NA|326aa|up_1|NZ_CP050691.1_2155166_2156144_-	TIGR00331, Heat-inducible_transcription_repressor_HrcA, heat shock gene repressor HrcA	NA|375aa|up_0|NZ_CP050691.1_2156244_2157369_-	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|608aa|down_0|NZ_CP050691.1_2157934_2159758_-	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|84aa|down_1|NZ_CP050691.1_2160103_2160355_+	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed	NA|325aa|down_2|NZ_CP050691.1_2160399_2161374_-	PRK05574, holA, DNA polymerase III subunit delta; Reviewed	NA|716aa|down_3|NZ_CP050691.1_2161430_2163578_-	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]	NA|154aa|down_4|NZ_CP050691.1_2163636_2164098_-	TIGR02571, putative_dCMP_deaminase, ComE operon protein 2	NA|229aa|down_5|NZ_CP050691.1_2164189_2164876_-	COG1555, ComEA, DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair]	NA|239aa|down_6|NZ_CP050691.1_2164915_2165632_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|118aa|down_7|NZ_CP050691.1_2165634_2165988_-	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown]	NA|195aa|down_8|NZ_CP050691.1_2165988_2166573_-	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]	NA|190aa|down_9|NZ_CP050691.1_2166562_2167132_-	TIGR00482, Probable_nicotinate-nucleotide_adenylyltransferase, nicotinate (nicotinamide) nucleotide adenylyltransferase
GCF_012044475.1_ASM1204447v1	NZ_CP050691	Staphylococcus aureus strain PMB196-1 chromosome, complete genome	10	2595601-2595682	8	CRISPRCasFinder	no	DEDDh	RT,WYL,cas3,DEDDh,DinG,csa3	Unclear	GGCCCCCACCCCAACTTACATTGT	24	1	5	2595625-2595658|2595625-2595658|2595625-2595658|2595625-2595658|2595625-2595658	NZ_CP050691.1_1366977-1367010|NZ_CP050691.1_1677649-1677616|NZ_CP050691.1_2279142-2279109|NZ_CP050691.1_559685-559718|NZ_CP050691.1_1892264-1892297	NA	1	1	Orphan	RT,WYL,cas3,DEDDh,DinG,csa3	NA|58aa|up_9|NZ_CP050691.1_2586318_2586492_-,NA|114aa|up_6|NZ_CP050691.1_2588121_2588463_+,NA|61aa|up_5|NZ_CP050691.1_2588666_2588849_+,NA	NA|58aa|up_9|NZ_CP050691.1_2586318_2586492_-	NA	NA|238aa|up_8|NZ_CP050691.1_2586454_2587168_+	COG2932, COG2932, Predicted transcriptional regulator [Transcription]	DEDDh|311aa|up_7|NZ_CP050691.1_2587183_2588116_+	PRK06195, PRK06195, DNA polymerase III subunit epsilon; Validated	NA|114aa|up_6|NZ_CP050691.1_2588121_2588463_+	NA	NA|61aa|up_5|NZ_CP050691.1_2588666_2588849_+	NA	NA|155aa|up_4|NZ_CP050691.1_2588948_2589413_+	PRK08119, PRK08119, flagellar motor switch protein; Validated	NA|346aa|up_3|NZ_CP050691.1_2589471_2590509_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|339aa|up_2|NZ_CP050691.1_2591627_2592644_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|352aa|up_1|NZ_CP050691.1_2592665_2593721_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|408aa|up_0|NZ_CP050691.1_2594156_2595380_+	PRK08588, PRK08588, succinyl-diaminopimelate desuccinylase; Reviewed	NA|436aa|down_0|NZ_CP050691.1_2595823_2597131_+	TIGR00933, Trk_system_potassium_uptake_protein_trkH	NA|539aa|down_1|NZ_CP050691.1_2597670_2599287_-	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|95aa|down_2|NZ_CP050691.1_2599362_2599647_-	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|248aa|down_3|NZ_CP050691.1_2599821_2600565_+	pfam02517, Abi, CAAX protease self-immunity	NA|409aa|down_4|NZ_CP050691.1_2600589_2601816_-	PRK10819, PRK10819, transport protein TonB; Provisional	NA|209aa|down_5|NZ_CP050691.1_2602012_2602639_+	COG3560, FMR2, Predicted oxidoreductase related to nitroreductase [General function prediction only]	NA|262aa|down_6|NZ_CP050691.1_2602999_2603785_+	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	NA|45aa|down_7|NZ_CP050691.1_2604384_2604519_-	PRK14752, PRK14752, delta-lysin family phenol-soluble modulin	NA|188aa|down_8|NZ_CP050691.1_2604754_2605318_+	COG4512, AgrB, Membrane protein putatively involved in post-translational modification of the autoinducing quorum-sensing peptide [Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms / Transcription]	NA|48aa|down_9|NZ_CP050691.1_2605320_2605464_+	smart00794, AgrD, Staphylococcal AgrD protein
GCF_012044475.1_ASM1204447v1	NZ_CP050691	Staphylococcus aureus strain PMB196-1 chromosome, complete genome	11	2723303-2723383	9	CRISPRCasFinder	no	csa3	RT,WYL,cas3,DEDDh,DinG,csa3	Type I-A	CAACTTTAGTTGTTAGGGGCTCTT	24	0	0	NA	NA	NA	1	1	Orphan	RT,WYL,cas3,DEDDh,DinG,csa3	NA|77aa|up_5|NZ_CP050691.1_2718177_2718408_-,NA|364aa|up_0|NZ_CP050691.1_2722194_2723286_+,NA|35aa|down_0|NZ_CP050691.1_2723718_2723823_-,NA|53aa|down_1|NZ_CP050691.1_2724502_2724661_+	NA|237aa|up_9|NZ_CP050691.1_2713788_2714499_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|NZ_CP050691.1_2714619_2715063_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|NZ_CP050691.1_2715262_2715676_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|NZ_CP050691.1_2716132_2717506_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|NZ_CP050691.1_2718177_2718408_-	NA	NA|313aa|up_4|NZ_CP050691.1_2718438_2719377_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|NZ_CP050691.1_2719812_2720478_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|NZ_CP050691.1_2720629_2720950_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|326aa|up_1|NZ_CP050691.1_2720951_2721929_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|NZ_CP050691.1_2722194_2723286_+	NA	NA|35aa|down_0|NZ_CP050691.1_2723718_2723823_-	NA	NA|53aa|down_1|NZ_CP050691.1_2724502_2724661_+	NA	NA|286aa|down_2|NZ_CP050691.1_2725318_2726176_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_3|NZ_CP050691.1_2726243_2727026_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_4|NZ_CP050691.1_2727257_2729063_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_5|NZ_CP050691.1_2729743_2731282_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_6|NZ_CP050691.1_2731316_2733449_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_7|NZ_CP050691.1_2733460_2733895_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_8|NZ_CP050691.1_2733894_2735001_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|452aa|down_9|NZ_CP050691.1_2743042_2744398_-	PRK14316, glmM, phosphoglucosamine mutase; Provisional
GCF_012044475.1_ASM1204447v1	NZ_CP050691	Staphylococcus aureus strain PMB196-1 chromosome, complete genome	12	2735624-2735709	10	CRISPRCasFinder	no	csa3	RT,WYL,cas3,DEDDh,DinG,csa3	Type I-A	CCAACTGATTTTTGCGTATCATTAGT	26	0	0	NA	NA	NA	1	1	Orphan	RT,WYL,cas3,DEDDh,DinG,csa3	NA|364aa|up_9|NZ_CP050691.1_2722194_2723286_+,NA|35aa|up_8|NZ_CP050691.1_2723718_2723823_-,NA|53aa|up_7|NZ_CP050691.1_2724502_2724661_+,NA	NA|364aa|up_9|NZ_CP050691.1_2722194_2723286_+	NA	NA|35aa|up_8|NZ_CP050691.1_2723718_2723823_-	NA	NA|53aa|up_7|NZ_CP050691.1_2724502_2724661_+	NA	NA|286aa|up_6|NZ_CP050691.1_2725318_2726176_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|up_5|NZ_CP050691.1_2726243_2727026_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|up_4|NZ_CP050691.1_2727257_2729063_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|up_3|NZ_CP050691.1_2729743_2731282_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|up_2|NZ_CP050691.1_2731316_2733449_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|up_1|NZ_CP050691.1_2733460_2733895_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|up_0|NZ_CP050691.1_2733894_2735001_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|452aa|down_0|NZ_CP050691.1_2743042_2744398_-	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|165aa|down_1|NZ_CP050691.1_2744424_2744919_-	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA
