assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_012044215.1_ASM1204421v1	NZ_CP050690	Staphylococcus aureus strain PMB179-1 chromosome, complete genome	1	405402-405592	1	CRT	no		cas3,WYL,csa3,DEDDh,DinG	Orphan	GGGGCCCCAACACAGAAGCTG	21	3	20	405423-405458|405423-405458|405423-405458|405423-405458|405423-405458|405423-405458|405480-405515|405480-405515|405480-405515|405480-405515|405480-405515|405480-405515|405480-405515|405480-405515|405480-405515|405537-405571|405537-405571|405537-405571|405537-405571|405537-405571	NZ_CP050690.1_367614-367649|NZ_CP050690.1_10360-10325|NZ_CP050690.1_1056582-1056547|NZ_CP050690.1_2731328-2731293|NZ_CP050690.1_318936-318901|NZ_CP050690.1_449735-449700|NZ_CP050690.1_1468742-1468707|NZ_CP050690.1_2171488-2171453|NZ_CP050690.1_2607041-2607006|NZ_CP050690.1_169212-169247|NZ_CP050690.1_412744-412779|NZ_CP050690.1_1958115-1958150|NZ_CP050690.1_1967523-1967558|NZ_CP050690.1_2292501-2292536|NZ_CP050690.1_2519317-2519352|NZ_CP050690.1_367558-367592|NZ_CP050690.1_1228072-1228106|NZ_CP050690.1_1494043-1494077|NZ_CP050690.1_2010518-2010484|NZ_CP050690.1_98367-98333	NA	3	3	Orphan	cas3,WYL,csa3,DEDDh,DinG	NA|153aa|up_6|NZ_CP050690.1_396982_397441_-,NA|68aa|down_6|NZ_CP050690.1_412707_412911_+	NA|791aa|up_9|NZ_CP050690.1_393420_395793_-	TIGR02063, Ribonuclease_R, ribonuclease R	NA|247aa|up_8|NZ_CP050690.1_395826_396567_-	COG1647, COG1647, Esterase/lipase [General function prediction only]	NA|78aa|up_7|NZ_CP050690.1_396682_396916_-	COG1314, SecG, Preprotein translocase subunit SecG [Intracellular trafficking and secretion]	NA|153aa|up_6|NZ_CP050690.1_396982_397441_-	NA	NA|435aa|up_5|NZ_CP050690.1_397779_399084_-	PRK00077, eno, enolase; Provisional	NA|506aa|up_4|NZ_CP050690.1_399213_400731_-	PRK05434, PRK05434, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase	NA|254aa|up_3|NZ_CP050690.1_400733_401495_-	PRK00042, tpiA, triosephosphate isomerase; Provisional	NA|397aa|up_2|NZ_CP050690.1_401616_402807_-	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|337aa|up_1|NZ_CP050690.1_402944_403955_-	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|338aa|up_0|NZ_CP050690.1_404007_405021_-	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|210aa|down_0|NZ_CP050690.1_405832_406462_-	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|301aa|down_1|NZ_CP050690.1_407164_408067_+	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|196aa|down_2|NZ_CP050690.1_408309_408897_-	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|315aa|down_3|NZ_CP050690.1_409469_410414_-	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|332aa|down_4|NZ_CP050690.1_410524_411520_-	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|304aa|down_5|NZ_CP050690.1_411516_412428_-	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|68aa|down_6|NZ_CP050690.1_412707_412911_+	NA	NA|312aa|down_7|NZ_CP050690.1_413251_414187_-	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|480aa|down_8|NZ_CP050690.1_414253_415693_-	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|162aa|down_9|NZ_CP050690.1_415700_416186_-	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins
GCF_012044215.1_ASM1204421v1	NZ_CP050690	Staphylococcus aureus strain PMB179-1 chromosome, complete genome	2	418208-418288	1	CRISPRCasFinder	no	cas3	cas3,WYL,csa3,DEDDh,DinG	Unclear	AGTTGGCGGGGCCCCAACATAAAGAA	26	1	15	418234-418262|418234-418262|418234-418262|418234-418262|418234-418262|418234-418262|418234-418262|418234-418262|418234-418262|418234-418262|418234-418262|418234-418262|418234-418262|418234-418262|418234-418262	NZ_CP050690.1_98652-98624|NZ_CP050690.1_1228126-1228154|NZ_CP050690.1_855411-855383|NZ_CP050690.1_855465-855437|NZ_CP050690.1_937350-937322|NZ_CP050690.1_2116353-2116325|NZ_CP050690.1_2171490-2171462|NZ_CP050690.1_2292499-2292527|NZ_CP050690.1_10475-10447|NZ_CP050690.1_1056697-1056669|NZ_CP050690.1_1468744-1468716|NZ_CP050690.1_2731441-2731413|NZ_CP050690.1_196017-196045|NZ_CP050690.1_1659761-1659789|NZ_CP050690.1_1958113-1958141	NA	1	1	Unclear	cas3,WYL,csa3,DEDDh,DinG	NA|68aa|up_5|NZ_CP050690.1_412707_412911_+,NA|36aa|down_5|NZ_CP050690.1_425729_425837_-,NA|35aa|down_7|NZ_CP050690.1_427269_427374_-	NA|196aa|up_9|NZ_CP050690.1_408309_408897_-	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|315aa|up_8|NZ_CP050690.1_409469_410414_-	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|332aa|up_7|NZ_CP050690.1_410524_411520_-	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|304aa|up_6|NZ_CP050690.1_411516_412428_-	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|68aa|up_5|NZ_CP050690.1_412707_412911_+	NA	NA|312aa|up_4|NZ_CP050690.1_413251_414187_-	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|480aa|up_3|NZ_CP050690.1_414253_415693_-	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|162aa|up_2|NZ_CP050690.1_415700_416186_-	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|280aa|up_1|NZ_CP050690.1_416193_417033_-	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|311aa|up_0|NZ_CP050690.1_417038_417971_-	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|949aa|down_0|NZ_CP050690.1_418577_421424_-	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|662aa|down_1|NZ_CP050690.1_421431_423417_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|79aa|down_2|NZ_CP050690.1_423685_423922_-	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|217aa|down_3|NZ_CP050690.1_423918_424569_-	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|280aa|down_4|NZ_CP050690.1_424742_425582_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|36aa|down_5|NZ_CP050690.1_425729_425837_-	NA	NA|370aa|down_6|NZ_CP050690.1_425990_427101_-	PRK00578, prfB, peptide chain release factor 2; Validated	NA|35aa|down_7|NZ_CP050690.1_427269_427374_-	NA	NA|844aa|down_8|NZ_CP050690.1_427415_429947_-	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|191aa|down_9|NZ_CP050690.1_430360_430933_-	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]
GCF_012044215.1_ASM1204421v1	NZ_CP050690	Staphylococcus aureus strain PMB179-1 chromosome, complete genome	3	1509390-1509487	2	CRISPRCasFinder	no		cas3,WYL,csa3,DEDDh,DinG	Orphan	GCCTTTCTAGCTCATAAAATTCGCAGAAA	29	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,csa3,DEDDh,DinG	NA|40aa|up_0|NZ_CP050690.1_1509091_1509211_+,NA|35aa|down_2|NZ_CP050690.1_1511659_1511764_-	NA|229aa|up_9|NZ_CP050690.1_1498368_1499055_+	COG0132, BioD, Dethiobiotin synthetase [Coenzyme metabolism]	NA|453aa|up_8|NZ_CP050690.1_1499032_1500391_+	TIGR00508, hypothetical_protein_DESPIG_00326, adenosylmethionine-8-amino-7-oxononanoate transaminase	NA|336aa|up_7|NZ_CP050690.1_1500392_1501400_+	PRK06256, PRK06256, biotin synthase; Validated	NA|372aa|up_6|NZ_CP050690.1_1501377_1502493_+	COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]	NA|231aa|up_5|NZ_CP050690.1_1502503_1503196_+	COG1424, BioW, Pimeloyl-CoA synthetase [Coenzyme metabolism]	NA|156aa|up_4|NZ_CP050690.1_1503206_1503674_+	pfam06177, QueT, QueT transporter	NA|326aa|up_3|NZ_CP050690.1_1503725_1504703_-	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|316aa|up_2|NZ_CP050690.1_1504704_1505652_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|310aa|up_1|NZ_CP050690.1_1506218_1507148_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|40aa|up_0|NZ_CP050690.1_1509091_1509211_+	NA	NA|289aa|down_0|NZ_CP050690.1_1509626_1510493_+	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|229aa|down_1|NZ_CP050690.1_1510819_1511506_+	PRK14119, gpmA, phosphoglyceromutase; Provisional	NA|35aa|down_2|NZ_CP050690.1_1511659_1511764_-	NA	NA|480aa|down_3|NZ_CP050690.1_1511937_1513377_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|260aa|down_4|NZ_CP050690.1_1513497_1514277_+	cd13711, PBP2_Ngo0372_TcyA, Substrate binding domain of ABC transporters involved in cystine import; the type 2 periplasmic binding protein fold	NA|240aa|down_5|NZ_CP050690.1_1514257_1514977_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|244aa|down_6|NZ_CP050690.1_1514973_1515705_+	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|417aa|down_7|NZ_CP050690.1_1515801_1517052_-	pfam02388, FemAB, FemAB family	NA|121aa|down_8|NZ_CP050690.1_1517306_1517669_+	pfam14729, DUF4467, Domain of unknown function with cystatin-like fold (DUF4467)	NA|200aa|down_9|NZ_CP050690.1_1517687_1518287_+	COG1651, DsbG, Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
GCF_012044215.1_ASM1204421v1	NZ_CP050690	Staphylococcus aureus strain PMB179-1 chromosome, complete genome	4	2173716-2173797	3	CRISPRCasFinder	no		cas3,WYL,csa3,DEDDh,DinG	Orphan	TGTTGGGCCCCACCCCAACTTGCAT	25	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,csa3,DEDDh,DinG	NA|38aa|up_4|NZ_CP050690.1_2169203_2169317_+,NA	NA|165aa|up_9|NZ_CP050690.1_2164220_2164715_+	PRK00522, tpx, thiol peroxidase	NA|316aa|up_8|NZ_CP050690.1_2164837_2165785_+	COG0827, COG0827, Adenine-specific DNA methylase [DNA replication, recombination, and repair]	NA|401aa|up_7|NZ_CP050690.1_2165872_2167075_+	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed	NA|167aa|up_6|NZ_CP050690.1_2167320_2167821_-	pfam00582, Usp, Universal stress protein family	NA|373aa|up_5|NZ_CP050690.1_2167961_2169080_+	cd05305, L-AlaDH, Alanine dehydrogenase NAD-binding and catalytic domains	NA|38aa|up_4|NZ_CP050690.1_2169203_2169317_+	NA	NA|352aa|up_3|NZ_CP050690.1_2169395_2170451_-	COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and metabolism]	NA|230aa|up_2|NZ_CP050690.1_2170625_2171315_+	PRK00685, PRK00685, metal-dependent hydrolase; Provisional	NA|138aa|up_1|NZ_CP050690.1_2171703_2172117_-	pfam00582, Usp, Universal stress protein family	NA|433aa|up_0|NZ_CP050690.1_2172321_2173620_+	COG4109, COG4109, Predicted transcriptional regulator containing CBS domains [Transcription]	NA|314aa|down_0|NZ_CP050690.1_2174071_2175013_+	COG0618, COG0618, Exopolyphosphatase-related proteins [General function prediction only]	NA|1066aa|down_1|NZ_CP050690.1_2175033_2178231_+	COG0587, DnaE, DNA polymerase III, alpha subunit [DNA replication, recombination, and repair]	NA|410aa|down_2|NZ_CP050690.1_2178680_2179910_+	PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed	NA|286aa|down_3|NZ_CP050690.1_2180104_2180962_+	PRK05654, PRK05654, acetyl-CoA carboxylase carboxyltransferase subunit beta	NA|315aa|down_4|NZ_CP050690.1_2180961_2181906_+	PRK05724, PRK05724, acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated	NA|323aa|down_5|NZ_CP050690.1_2182174_2183143_+	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase	NA|586aa|down_6|NZ_CP050690.1_2183164_2184922_+	PRK06354, PRK06354, pyruvate kinase; Provisional	NA|454aa|down_7|NZ_CP050690.1_2185269_2186631_-	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|374aa|down_8|NZ_CP050690.1_2186978_2188100_+	PRK14035, PRK14035, citrate synthase; Provisional	NA|423aa|down_9|NZ_CP050690.1_2188148_2189417_+	PRK07006, PRK07006, isocitrate dehydrogenase; Reviewed
GCF_012044215.1_ASM1204421v1	NZ_CP050690	Staphylococcus aureus strain PMB179-1 chromosome, complete genome	5	2259846-2259931	4	CRISPRCasFinder	no		cas3,WYL,csa3,DEDDh,DinG	Orphan	AAGTTGGGGACGGGGCCCCAACACAGA	27	1	10	2259873-2259904|2259873-2259904|2259873-2259904|2259873-2259904|2259873-2259904|2259873-2259904|2259873-2259904|2259873-2259904|2259873-2259904|2259873-2259904	NZ_CP050690.1_10537-10506|NZ_CP050690.1_94460-94429|NZ_CP050690.1_195841-195872|NZ_CP050690.1_195956-195987|NZ_CP050690.1_855582-855551|NZ_CP050690.1_952484-952515|NZ_CP050690.1_2116242-2116211|NZ_CP050690.1_2519370-2519401|NZ_CP050690.1_2606988-2606957|NZ_CP050690.1_2731503-2731472	NA	1	1	Orphan	cas3,WYL,csa3,DEDDh,DinG	NA|43aa|up_7|NZ_CP050690.1_2252529_2252658_+,NA|49aa|up_3|NZ_CP050690.1_2255693_2255840_+,NA	NA|421aa|up_9|NZ_CP050690.1_2249152_2250415_+	PRK00037, hisS, histidyl-tRNA synthetase; Reviewed	NA|589aa|up_8|NZ_CP050690.1_2250430_2252197_+	PRK00476, aspS, aspartyl-tRNA synthetase; Validated	NA|43aa|up_7|NZ_CP050690.1_2252529_2252658_+	NA	NA|258aa|up_6|NZ_CP050690.1_2252657_2253431_+	COG1179, COG1179, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]	NA|141aa|up_5|NZ_CP050690.1_2254949_2255372_+	COG1959, COG1959, Predicted transcriptional regulator [Transcription]	NA|61aa|up_4|NZ_CP050690.1_2255471_2255654_+	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|49aa|up_3|NZ_CP050690.1_2255693_2255840_+	NA	NA|338aa|up_2|NZ_CP050690.1_2256076_2257090_-	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1	NA|381aa|up_1|NZ_CP050690.1_2257401_2258544_+	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]	NA|373aa|up_0|NZ_CP050690.1_2258544_2259663_+	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed	NA|223aa|down_0|NZ_CP050690.1_2260242_2260911_+	sd00006, TPR, Tetratricopeptide repeat	NA|826aa|down_1|NZ_CP050690.1_2260912_2263390_+	TIGR01448, recD_rel, helicase, putative, RecD/TraA family	NA|877aa|down_2|NZ_CP050690.1_2263732_2266363_+	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed	NA|87aa|down_3|NZ_CP050690.1_2266425_2266686_+	PRK05473, IreB-like, IreB family regulatory phosphoprotein	NA|143aa|down_4|NZ_CP050690.1_2266689_2267118_+	COG0816, COG0816, Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B	NA|103aa|down_5|NZ_CP050690.1_2267132_2267441_+	PRK13678, PRK13678, hypothetical protein; Provisional	NA|213aa|down_6|NZ_CP050690.1_2267725_2268364_+	COG4122, COG4122, Predicted O-methyltransferase [General function prediction only]	NA|308aa|down_7|NZ_CP050690.1_2268366_2269290_+	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|423aa|down_8|NZ_CP050690.1_2269301_2270570_+	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|208aa|down_9|NZ_CP050690.1_2270569_2271193_+	PRK05480, PRK05480, uridine/cytidine kinase; Provisional
