assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_011801285.1_ASM1180128v1	NZ_CP049053	Streptococcus thermophilus strain ST64987 chromosome, complete genome	1	620349-622301	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas9,cas1,cas2,csn2	cas3,DEDDh,cas9,cas1,cas2,csn2,DinG,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6	Type II-A,Type II-B,Type II-C	GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC,GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC,GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC	36,36,36	0	0	NA	NA	NA:NA:NA	29,29,29	29	TypeII-A,TypeII-B,TypeII-C	cas3,DEDDh,cas9,cas1,cas2,csn2,DinG,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6	NA|86aa|up_5|NZ_CP049053.1_613162_613420_-,NA	NA|454aa|up_9|NZ_CP049053.1_609747_611109_+	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]	NA|277aa|up_8|NZ_CP049053.1_611318_612149_+	cd10447, GIY-YIG_unchar_2, GIY-YIG domain of uncharacterized hypothetical protein found in bacteria and archaea	NA|74aa|up_7|NZ_CP049053.1_612316_612538_+	COG3655, COG3655, Predicted transcriptional regulator [Transcription]	NA|153aa|up_6|NZ_CP049053.1_612537_612996_+	COG3392, COG3392, Adenine-specific DNA methylase [DNA replication, recombination, and repair]	NA|86aa|up_5|NZ_CP049053.1_613162_613420_-	NA	NA|205aa|up_4|NZ_CP049053.1_613589_614204_+	pfam09911, DUF2140, Uncharacterized protein conserved in bacteria (DUF2140)	cas9|1122aa|up_3|NZ_CP049053.1_614457_617823_+	cd09643, Csn1, CRISPR/Cas system-associated protein Cas9	cas1|304aa|up_2|NZ_CP049053.1_617999_618911_+	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas2|108aa|up_1|NZ_CP049053.1_618912_619236_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	csn2|351aa|up_0|NZ_CP049053.1_619232_620285_+	pfam16813, Cas_St_Csn2, CRISPR-associated protein Csn2 subfamily St	NA|272aa|down_0|NZ_CP049053.1_622342_623158_-	COG3689, COG3689, Predicted membrane protein [Function unknown]	NA|301aa|down_1|NZ_CP049053.1_623157_624060_-	COG0701, COG0701, Predicted permeases [General function prediction only]	NA|711aa|down_2|NZ_CP049053.1_624423_626556_+	COG2183, Tex, Transcriptional accessory protein [Transcription]	NA|147aa|down_3|NZ_CP049053.1_626542_626983_+	PRK04351, PRK04351, SprT family protein	NA|88aa|down_4|NZ_CP049053.1_627048_627312_+	COG1983, PspC, Putative stress-responsive transcriptional regulator [Transcription / Signal transduction mechanisms]	NA|310aa|down_5|NZ_CP049053.1_627445_628375_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|264aa|down_6|NZ_CP049053.1_628374_629166_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|133aa|down_7|NZ_CP049053.1_629288_629687_+	COG4768, COG4768, Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain [General function prediction only]	NA|147aa|down_8|NZ_CP049053.1_629699_630140_+	pfam12732, YtxH, YtxH-like protein	NA|99aa|down_9|NZ_CP049053.1_630160_630457_-	pfam11674, DUF3270, Protein of unknown function (DUF3270)
GCF_011801285.1_ASM1180128v1	NZ_CP049053	Streptococcus thermophilus strain ST64987 chromosome, complete genome	2	858941-859784	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas1,cas2,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6	cas3,DEDDh,cas9,cas1,cas2,csn2,DinG,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6	Type III-B,Type III-C,Type III-D,Type III-A	GATATAAACCTAATTACCTCGAGAGGGGACGGAAAC,GATATAAACCTAATTACCTCGAGAGGGGACGGAAAC,GATATAAACCTAATTACCTCGAGAGGGGACGGAAAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	10,11,11	11	TypeIII-B,TypeIII-C,TypeIII-D,TypeIII-A	cas3,DEDDh,cas9,cas1,cas2,csn2,DinG,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6	NA|124aa|up_9|NZ_CP049053.1_846762_847134_+,NA	NA|124aa|up_9|NZ_CP049053.1_846762_847134_+	NA	NA|255aa|up_8|NZ_CP049053.1_847560_848325_+	cd09007, NP-I_spr0068, uncharacterized subfamily of the nucleoside phosphorylase-I family	NA|212aa|up_7|NZ_CP049053.1_848386_849022_-	cd04302, HAD_5NT, haloacid dehalogenase (HAD)-like 5'-nucleotidases similar to the Pseudomonas aeruginosa PA0065	NA|553aa|up_6|NZ_CP049053.1_851948_853607_-	pfam05833, FbpA, Fibronectin-binding protein A N-terminus (FbpA)	NA|281aa|up_5|NZ_CP049053.1_853924_854767_+	pfam05857, TraX, TraX protein	NA|183aa|up_4|NZ_CP049053.1_854808_855357_+	cd03135, GATase1_DJ-1, Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1	NA|268aa|up_3|NZ_CP049053.1_855598_856402_+	PRK00054, PRK00054, dihydroorotate dehydrogenase electron transfer subunit; Reviewed	NA|316aa|up_2|NZ_CP049053.1_856420_857368_+	PRK07259, PRK07259, dihydroorotate dehydrogenase	cas1|335aa|up_1|NZ_CP049053.1_857506_858511_+	cd09634, Cas1_I-II-III, CRISPR/Cas system-associated protein Cas1	cas2|110aa|up_0|NZ_CP049053.1_858510_858840_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas6|244aa|down_0|NZ_CP049053.1_859914_860646_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	cas10|759aa|down_1|NZ_CP049053.1_860626_862903_+	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	csm2gr11|122aa|down_2|NZ_CP049053.1_862906_863272_+	pfam03750, Csm2_III-A, Csm2 Type III-A	csm3gr7|221aa|down_3|NZ_CP049053.1_863271_863934_+	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm4gr5|300aa|down_4|NZ_CP049053.1_863935_864835_+	pfam17953, Csm4_C, CRISPR Csm4 C-terminal domain	csm5gr7|358aa|down_5|NZ_CP049053.1_864837_865911_+	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm6|387aa|down_6|NZ_CP049053.1_865907_867068_+	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm6|364aa|down_7|NZ_CP049053.1_867082_868174_+	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	NA|232aa|down_8|NZ_CP049053.1_868374_869070_+	PRK00230, PRK00230, orotidine-5'-phosphate decarboxylase	NA|210aa|down_9|NZ_CP049053.1_869158_869788_+	PRK00455, pyrE, orotate phosphoribosyltransferase; Validated
GCF_011801285.1_ASM1180128v1	NZ_CP049053	Streptococcus thermophilus strain ST64987 chromosome, complete genome	3	1338801-1340090	3,3,3	PILER-CR,CRISPRCasFinder,CRT	no	csn2,cas2,cas1,cas9	cas3,DEDDh,cas9,cas1,cas2,csn2,DinG,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6	Type II-A,Type II-B,Type II-C	GTTTTGGAACCATTCGAAACAACACAGCTCTAAAAC,GTTTTGGAACCATTCGAAACAACACAGCTCTAAAAC,GTTTTGGAACCATTCGAAACAACACAGCTCTAAAAC	36,36,36	0	0	NA	NA	II-A,II-B:II-A,II-B:II-A,II-B	19,19,19	19	TypeII-A,TypeII-B,TypeII-C	cas3,DEDDh,cas9,cas1,cas2,csn2,DinG,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6	NA|66aa|up_7|NZ_CP049053.1_1332510_1332708_-,NA|148aa|up_4|NZ_CP049053.1_1335593_1336037_-,NA|80aa|up_0|NZ_CP049053.1_1338477_1338717_-,NA	NA|737aa|up_9|NZ_CP049053.1_1329486_1331697_+	cd13619, PBP2_GlnP, Glutamine-binding domain of ABC transporter, a member of the type 2 periplasmic binding fold protein superfamily	NA|247aa|up_8|NZ_CP049053.1_1331696_1332437_+	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|66aa|up_7|NZ_CP049053.1_1332510_1332708_-	NA	NA|438aa|up_6|NZ_CP049053.1_1332874_1334188_-	PRK12297, obgE, GTPase CgtA; Reviewed	NA|43aa|up_5|NZ_CP049053.1_1334281_1334410_-	pfam13253, DUF4044, Protein of unknown function (DUF4044)	NA|148aa|up_4|NZ_CP049053.1_1335593_1336037_-	NA	NA|128aa|up_3|NZ_CP049053.1_1336067_1336451_-	COG2050, PaaI, HGG motif-containing thioesterase, possibly involved in aromatic compounds catabolism [Secondary metabolites biosynthesis,    transport, and catabolism]	NA|81aa|up_2|NZ_CP049053.1_1337139_1337382_+	COG2182, MalE, Maltose-binding periplasmic proteins/domains [Carbohydrate transport and metabolism]	NA|297aa|up_1|NZ_CP049053.1_1337549_1338440_+	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|80aa|up_0|NZ_CP049053.1_1338477_1338717_-	NA	csn2|220aa|down_0|NZ_CP049053.1_1340411_1341071_-	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|115aa|down_1|NZ_CP049053.1_1341060_1341405_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|290aa|down_2|NZ_CP049053.1_1341401_1342271_-	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas9|1389aa|down_3|NZ_CP049053.1_1342270_1346437_-	TIGR01865, conserved_hypothetical_protein, CRISPR subtype II/NMENI RNA-guided endonuclease Cas9/Csn1	NA|216aa|down_4|NZ_CP049053.1_1346769_1347417_-	cd07500, HAD_PSP, phosphoserine phosphatase (PSP), similar to Methanococcus Jannaschii PSP and Saccharomyces cerevisiae SER2p	NA|575aa|down_5|NZ_CP049053.1_1347528_1349253_-	PRK04778, PRK04778, septation ring formation regulator EzrA; Provisional	NA|651aa|down_6|NZ_CP049053.1_1349349_1351302_-	PRK05644, gyrB, DNA gyrase subunit B; Validated	NA|187aa|down_7|NZ_CP049053.1_1351302_1351863_-	cd07523, HAD_YsbA-like, uncharacterized family of the haloacid dehalogenase-like superfamily, similar to the uncharacterized Lactococcus lactis YsbA	NA|232aa|down_8|NZ_CP049053.1_1351948_1352644_-	pfam04172, LrgB, LrgB-like family	NA|125aa|down_9|NZ_CP049053.1_1352636_1353011_-	pfam03788, LrgA, LrgA family
GCF_011801285.1_ASM1180128v1	NZ_CP049053	Streptococcus thermophilus strain ST64987 chromosome, complete genome	4	1575062-1575153	4	CRISPRCasFinder	no	cas3	cas3,DEDDh,cas9,cas1,cas2,csn2,DinG,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6	Unclear	CTTTTCTTTACGATATCAATTTTAACATCTTT	32	0	0	NA	NA	NA	1	1	Unclear	cas3,DEDDh,cas9,cas1,cas2,csn2,DinG,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6	NA|87aa|up_3|NZ_CP049053.1_1570677_1570938_-,NA|143aa|down_7|NZ_CP049053.1_1581054_1581483_-,NA|64aa|down_9|NZ_CP049053.1_1582667_1582859_-	cas3|673aa|up_9|NZ_CP049053.1_1562127_1564146_-	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional	NA|368aa|up_8|NZ_CP049053.1_1564274_1565378_-	PRK00053, alr, alanine racemase; Reviewed	NA|120aa|up_7|NZ_CP049053.1_1565398_1565758_-	PRK00070, acpS, 4'-phosphopantetheinyl transferase; Provisional	NA|344aa|up_6|NZ_CP049053.1_1565761_1566793_-	PRK09261, PRK09261, phospho-2-dehydro-3-deoxyheptonate aldolase; Validated	NA|344aa|up_5|NZ_CP049053.1_1566890_1567922_-	COG0722, AroG, 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]	NA|856aa|up_4|NZ_CP049053.1_1567927_1570495_-	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|87aa|up_3|NZ_CP049053.1_1570677_1570938_-	NA	NA|316aa|up_2|NZ_CP049053.1_1571024_1571972_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|298aa|up_1|NZ_CP049053.1_1572037_1572931_-	pfam00480, ROK, ROK family	NA|634aa|up_0|NZ_CP049053.1_1573115_1575017_-	TIGR01996, Includes:_Phosphotransferase_enzyme_IIB_component, PTS system, sucrose-specific IIBC component	NA|481aa|down_0|NZ_CP049053.1_1575265_1576708_+	TIGR01322, Sucrose-6-phosphate_hydrolase, sucrose-6-phosphate hydrolase	NA|322aa|down_1|NZ_CP049053.1_1576716_1577682_+	cd06291, PBP1_Qymf-like, ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs	NA|145aa|down_2|NZ_CP049053.1_1577771_1578206_-	PRK00202, nusB, transcription antitermination factor NusB	NA|130aa|down_3|NZ_CP049053.1_1578198_1578588_-	pfam03780, Asp23, Asp23 family, cell envelope-related function	NA|187aa|down_4|NZ_CP049053.1_1578658_1579219_-	PRK00529, PRK00529, elongation factor P; Validated	NA|152aa|down_5|NZ_CP049053.1_1579331_1579787_-	TIGR02571, putative_dCMP_deaminase, ComE operon protein 2	NA|354aa|down_6|NZ_CP049053.1_1579805_1580867_-	COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and metabolism]	NA|143aa|down_7|NZ_CP049053.1_1581054_1581483_-	NA	NA|130aa|down_8|NZ_CP049053.1_1582090_1582480_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|64aa|down_9|NZ_CP049053.1_1582667_1582859_-	NA
