assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_011769865.1_ASM1176986v1	NZ_CP050382	Escherichia coli strain 52148 chromosome, complete genome	1	1624442-1624776	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3	WYL,cas3,csa3,PD-DExK,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Unclear	GTGTTCCCCGCGCCAGCGGGGATAAACC,GTGTTCCCCGCGCCAGCGGGGATAAACCGA,GTGTTCCCCGCGCCAGCGGGGATAAACC	28,30,28	0	0	NA	NA	I-E:I-E:I-E	5,5,5	5	Unclear	WYL,cas3,csa3,PD-DExK,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA|47aa|up_1|NZ_CP050382.1_1623151_1623292_-,NA	NA|434aa|up_9|NZ_CP050382.1_1613848_1615150_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_8|NZ_CP050382.1_1615197_1617432_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_7|NZ_CP050382.1_1617509_1617758_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_6|NZ_CP050382.1_1617757_1618093_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_5|NZ_CP050382.1_1618163_1618955_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_4|NZ_CP050382.1_1619182_1620820_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_3|NZ_CP050382.1_1620907_1622206_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_2|NZ_CP050382.1_1622265_1623138_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|47aa|up_1|NZ_CP050382.1_1623151_1623292_-	NA	NA|224aa|up_0|NZ_CP050382.1_1623430_1624102_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|NZ_CP050382.1_1625413_1626892_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|NZ_CP050382.1_1626918_1628196_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|NZ_CP050382.1_1628514_1629300_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|NZ_CP050382.1_1629369_1630824_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|470aa|down_4|NZ_CP050382.1_1630845_1632255_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|NZ_CP050382.1_1632232_1633012_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|298aa|down_6|NZ_CP050382.1_1632975_1633869_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_7|NZ_CP050382.1_1634016_1634592_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_8|NZ_CP050382.1_1634608_1634869_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_9|NZ_CP050382.1_1634859_1636131_-	PRK10015, PRK10015, oxidoreductase; Provisional
GCF_011769865.1_ASM1176986v1	NZ_CP050382	Escherichia coli strain 52148 chromosome, complete genome	2	1650325-1651026	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	WYL,cas3,csa3,PD-DExK,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Type I-E	GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	7,11,11	11	TypeI-E	WYL,cas3,csa3,PD-DExK,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA,NA	NA|571aa|up_9|NZ_CP050382.1_1638688_1640401_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_8|NZ_CP050382.1_1640475_1641210_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	cas3|889aa|up_7|NZ_CP050382.1_1641568_1644235_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|495aa|up_6|NZ_CP050382.1_1644673_1646158_+	PRK09693, PRK09693, Cascade antiviral complex protein; Validated	cse2gr11|161aa|up_5|NZ_CP050382.1_1646150_1646633_+	cd09670, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|364aa|up_4|NZ_CP050382.1_1646645_1647737_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|225aa|up_3|NZ_CP050382.1_1647739_1648414_+	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas6e|200aa|up_2|NZ_CP050382.1_1648400_1649000_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|306aa|up_1|NZ_CP050382.1_1649015_1649933_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|95aa|up_0|NZ_CP050382.1_1649934_1650219_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NZ_CP050382.1_1651108_1652146_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP050382.1_1652397_1653306_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP050382.1_1653307_1654735_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP050382.1_1654734_1655340_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP050382.1_1655389_1655713_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP050382.1_1655906_1656218_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP050382.1_1656236_1656947_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP050382.1_1656946_1657426_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP050382.1_1657422_1658472_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP050382.1_1658452_1659214_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_011769865.1_ASM1176986v1	NZ_CP050382	Escherichia coli strain 52148 chromosome, complete genome	3	2146809-2146926	3	CRISPRCasFinder	no		WYL,cas3,csa3,PD-DExK,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	CCGAGCCGTAGGCCGGATAAGGCGTTCACGC	31	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,csa3,PD-DExK,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA,NA	NA|62aa|up_9|NZ_CP050382.1_2136094_2136280_-	PRK09956, PRK09956, ISNCY family transposase	NA|300aa|up_8|NZ_CP050382.1_2136292_2137192_-	PRK09956, PRK09956, ISNCY family transposase	NA|397aa|up_7|NZ_CP050382.1_2137384_2138575_-	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|420aa|up_6|NZ_CP050382.1_2138571_2139831_-	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|543aa|up_5|NZ_CP050382.1_2139820_2141449_-	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|453aa|up_4|NZ_CP050382.1_2141721_2143080_+	PRK11273, glpT, glycerol-3-phosphate transporter	NA|359aa|up_3|NZ_CP050382.1_2143084_2144161_+	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|217aa|up_2|NZ_CP050382.1_2144623_2145274_+	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|85aa|up_1|NZ_CP050382.1_2145327_2145582_-	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|377aa|up_0|NZ_CP050382.1_2145581_2146712_-	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|762aa|down_0|NZ_CP050382.1_2146945_2149231_-	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|1251aa|down_1|NZ_CP050382.1_2149926_2153679_+	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|241aa|down_2|NZ_CP050382.1_2153806_2154529_-	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|876aa|down_3|NZ_CP050382.1_2154675_2157303_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|563aa|down_4|NZ_CP050382.1_2157451_2159140_+	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|208aa|down_5|NZ_CP050382.1_2159136_2159760_+	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|1465aa|down_6|NZ_CP050382.1_2159903_2164298_+	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|550aa|down_7|NZ_CP050382.1_2164298_2165948_+	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|259aa|down_8|NZ_CP050382.1_2165952_2166729_+	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|395aa|down_9|NZ_CP050382.1_2166802_2167987_-	PRK05790, PRK05790, putative acyltransferase; Provisional
GCF_011769865.1_ASM1176986v1	NZ_CP050382	Escherichia coli strain 52148 chromosome, complete genome	4	2548785-2548918	4	CRISPRCasFinder	no	DEDDh	WYL,cas3,csa3,PD-DExK,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Unclear	CCGCATCCGACATTGGCAGTGTGCCTGATGCGACGCT	37	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,csa3,PD-DExK,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA|22aa|up_2|NZ_CP050382.1_2546930_2546996_+,NA	NA|273aa|up_9|NZ_CP050382.1_2540898_2541717_-	PRK10302, PRK10302, hypothetical protein; Provisional	NA|189aa|up_8|NZ_CP050382.1_2541713_2542280_-	PRK11440, PRK11440, putative hydrolase; Provisional	NA|591aa|up_7|NZ_CP050382.1_2542589_2544362_+	PRK00476, aspS, aspartyl-tRNA synthetase; Validated	NA|151aa|up_6|NZ_CP050382.1_2544479_2544932_+	PRK09438, nudB, dihydroneopterin triphosphate pyrophosphatase; Provisional	NA|247aa|up_5|NZ_CP050382.1_2544960_2545701_+	PRK00110, PRK00110, YebC/PmpR family DNA-binding transcriptional regulator	NA|174aa|up_4|NZ_CP050382.1_2545735_2546257_+	TIGR00228, Crossover_junction_endodeoxyribonuclease_RuvC, crossover junction endodeoxyribonuclease RuvC	NA|201aa|up_3|NZ_CP050382.1_2546258_2546861_-	PRK11470, PRK11470, YebB family permuted papain-like enzyme	NA|22aa|up_2|NZ_CP050382.1_2546930_2546996_+	NA	NA|204aa|up_1|NZ_CP050382.1_2547134_2547746_+	PRK00116, ruvA, Holliday junction branch migration protein RuvA	NA|337aa|up_0|NZ_CP050382.1_2547754_2548765_+	PRK00080, ruvB, Holliday junction branch migration DNA helicase RuvB	NA|262aa|down_0|NZ_CP050382.1_2549008_2549794_-	PRK09543, znuB, zinc ABC transporter permease subunit ZnuB	NA|252aa|down_1|NZ_CP050382.1_2549790_2550546_-	PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed	NA|311aa|down_2|NZ_CP050382.1_2550624_2551557_+	PRK09545, znuA, zinc ABC transporter substrate-binding protein ZnuA	NA|441aa|down_3|NZ_CP050382.1_2551572_2552895_+	PRK11649, PRK11649, putative peptidase; Provisional	NA|324aa|down_4|NZ_CP050382.1_2553014_2553986_+	PRK08943, PRK08943, lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase; Validated	NA|481aa|down_5|NZ_CP050382.1_2554117_2555560_-	PRK05826, PRK05826, pyruvate kinase; Provisional	NA|290aa|down_6|NZ_CP050382.1_2555687_2556557_-	PRK11302, PRK11302, DNA-binding transcriptional regulator HexR; Provisional	NA|492aa|down_7|NZ_CP050382.1_2556894_2558370_+	PRK05722, PRK05722, glucose-6-phosphate 1-dehydrogenase; Validated	NA|604aa|down_8|NZ_CP050382.1_2558604_2560416_+	PRK09054, PRK09054, phosphogluconate dehydratase; Validated	NA|214aa|down_9|NZ_CP050382.1_2560452_2561094_+	PRK05718, PRK05718, keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
GCF_011769865.1_ASM1176986v1	NZ_CP050382	Escherichia coli strain 52148 chromosome, complete genome	5	2738417-2738540	5	CRISPRCasFinder	no	DEDDh	WYL,cas3,csa3,PD-DExK,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,csa3,PD-DExK,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA,NA|30aa|down_7|NZ_CP050382.1_2747436_2747526_+	NA|471aa|up_9|NZ_CP050382.1_2727871_2729284_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP050382.1_2729840_2730050_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP050382.1_2730504_2731131_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP050382.1_2731151_2733254_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|213aa|up_5|NZ_CP050382.1_2733266_2733905_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP050382.1_2733968_2734637_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP050382.1_2734633_2735419_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP050382.1_2735422_2736235_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP050382.1_2736246_2737851_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP050382.1_2737976_2738282_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP050382.1_2738854_2740111_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP050382.1_2740151_2741525_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP050382.1_2741739_2742381_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP050382.1_2742420_2743569_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP050382.1_2743859_2745071_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP050382.1_2745183_2746116_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP050382.1_2746112_2747138_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP050382.1_2747436_2747526_+	NA	NA|390aa|down_8|NZ_CP050382.1_2747691_2748861_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP050382.1_2749095_2749677_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_011769865.1_ASM1176986v1	NZ_CP050382	Escherichia coli strain 52148 chromosome, complete genome	6	3406096-3406187	6	CRISPRCasFinder	no		WYL,cas3,csa3,PD-DExK,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,csa3,PD-DExK,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA|70aa|up_9|NZ_CP050382.1_3395172_3395382_-,NA	NA|70aa|up_9|NZ_CP050382.1_3395172_3395382_-	NA	NA|1321aa|up_8|NZ_CP050382.1_3395436_3399399_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_CP050382.1_3399438_3400077_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_CP050382.1_3400364_3401456_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP050382.1_3401455_3402148_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP050382.1_3402159_3402546_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP050382.1_3402553_3403354_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP050382.1_3403363_3403954_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP050382.1_3403964_3404459_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP050382.1_3404479_3405808_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP050382.1_3406610_3407207_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP050382.1_3407227_3407455_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP050382.1_3407492_3408734_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|419aa|down_3|NZ_CP050382.1_3409026_3410283_-	PRK09784, PRK09784, YccE family protein	NA|307aa|down_4|NZ_CP050382.1_3410543_3411464_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_5|NZ_CP050382.1_3411463_3411769_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_6|NZ_CP050382.1_3411920_3412520_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_7|NZ_CP050382.1_3412516_3415063_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|386aa|down_8|NZ_CP050382.1_3415077_3416235_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_9|NZ_CP050382.1_3416364_3417057_+	PRK10766, PRK10766, two-component system response regulator TorR
GCF_011769865.1_ASM1176986v1	NZ_CP050382	Escherichia coli strain 52148 chromosome, complete genome	7	3667596-3667740	7	CRISPRCasFinder	no		WYL,cas3,csa3,PD-DExK,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	52	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,csa3,PD-DExK,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA,NA	NA|330aa|up_9|NZ_CP050382.1_3655494_3656484_-	PRK00164, moaA, GTP 3',8-cyclase MoaA	NA|303aa|up_8|NZ_CP050382.1_3656880_3657789_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|674aa|up_7|NZ_CP050382.1_3657980_3660002_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|226aa|up_6|NZ_CP050382.1_3660580_3661258_-	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD	NA|252aa|up_5|NZ_CP050382.1_3661250_3662006_-	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional	NA|385aa|up_4|NZ_CP050382.1_3661992_3663147_-	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed	NA|347aa|up_3|NZ_CP050382.1_3663143_3664184_-	PRK15108, PRK15108, biotin synthase; Provisional	NA|430aa|up_2|NZ_CP050382.1_3664270_3665560_+	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated	NA|159aa|up_1|NZ_CP050382.1_3665618_3666095_+	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional	NA|428aa|up_0|NZ_CP050382.1_3666246_3667530_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|754aa|down_0|NZ_CP050382.1_3667763_3670025_-	PRK11413, PRK11413, putative hydratase; Provisional	NA|478aa|down_1|NZ_CP050382.1_3670207_3671641_-	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|351aa|down_2|NZ_CP050382.1_3671716_3672769_-	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|318aa|down_3|NZ_CP050382.1_3672952_3673906_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|332aa|down_4|NZ_CP050382.1_3673946_3674942_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|273aa|down_5|NZ_CP050382.1_3675096_3675915_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|353aa|down_6|NZ_CP050382.1_3675915_3676974_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|230aa|down_7|NZ_CP050382.1_3676976_3677666_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|258aa|down_8|NZ_CP050382.1_3677665_3678439_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|50aa|down_9|NZ_CP050382.1_3678605_3678755_-	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ
GCF_011769865.1_ASM1176986v1	NZ_CP050382	Escherichia coli strain 52148 chromosome, complete genome	8	3917718-3917814	8	CRISPRCasFinder	no		WYL,cas3,csa3,PD-DExK,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	TTGTAGGCCTGATAAGATGCGTCAAGC	27	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,csa3,PD-DExK,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA,NA	NA|231aa|up_9|NZ_CP050382.1_3909513_3910206_-	PRK15195, PRK15195, molecular chaperone FimC	NA|181aa|up_8|NZ_CP050382.1_3910425_3910968_-	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|289aa|up_7|NZ_CP050382.1_3911438_3912305_+	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|71aa|up_6|NZ_CP050382.1_3912306_3912519_+	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|174aa|up_5|NZ_CP050382.1_3912626_3913148_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|462aa|up_4|NZ_CP050382.1_3913183_3914569_-	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|165aa|up_3|NZ_CP050382.1_3914742_3915237_+	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|241aa|up_2|NZ_CP050382.1_3915239_3915962_+	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|170aa|up_1|NZ_CP050382.1_3916079_3916589_+	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|356aa|up_0|NZ_CP050382.1_3916585_3917653_+	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|298aa|down_0|NZ_CP050382.1_3917847_3918741_-	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|272aa|down_1|NZ_CP050382.1_3918737_3919553_-	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|420aa|down_2|NZ_CP050382.1_3919563_3920823_-	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|556aa|down_3|NZ_CP050382.1_3920832_3922500_-	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|350aa|down_4|NZ_CP050382.1_3922816_3923866_+	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|412aa|down_5|NZ_CP050382.1_3923887_3925123_+	TIGR03176, AllC, allantoate amidohydrolase	NA|262aa|down_6|NZ_CP050382.1_3925133_3925919_+	TIGR03214, ura-cupin, putative allantoin catabolism protein	NA|382aa|down_7|NZ_CP050382.1_3926146_3927292_-	PRK09932, PRK09932, glycerate 3-kinase	NA|434aa|down_8|NZ_CP050382.1_3927313_3928615_-	PRK11412, PRK11412, uracil/xanthine transporter	NA|454aa|down_9|NZ_CP050382.1_3928671_3930033_-	PRK08044, PRK08044, allantoinase AllB
GCF_011769865.1_ASM1176986v1	NZ_CP050382	Escherichia coli strain 52148 chromosome, complete genome	9	4057856-4058000	9	CRISPRCasFinder	no		WYL,cas3,csa3,PD-DExK,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	TTTTGCAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCAT	43	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,csa3,PD-DExK,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA,NA|28aa|down_2|NZ_CP050382.1_4060045_4060129_-	NA|357aa|up_9|NZ_CP050382.1_4042994_4044065_-	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional	NA|194aa|up_8|NZ_CP050382.1_4044157_4044739_+	PRK10045, PRK10045, ACP phosphodiesterase	NA|606aa|up_7|NZ_CP050382.1_4044743_4046561_-	PRK10785, PRK10785, maltodextrin glucosidase; Provisional	NA|458aa|up_6|NZ_CP050382.1_4046716_4048090_-	PRK10580, proY, putative proline-specific permease; Provisional	NA|440aa|up_5|NZ_CP050382.1_4048165_4049485_-	PRK15433, PRK15433, branched-chain amino acid transporter carrier protein BrnQ	NA|432aa|up_4|NZ_CP050382.1_4049891_4051187_-	PRK11006, phoR, phosphate regulon sensor histidine kinase PhoR	NA|230aa|up_3|NZ_CP050382.1_4051244_4051934_-	PRK10161, PRK10161, phosphate response regulator transcription factor PhoB	NA|401aa|up_2|NZ_CP050382.1_4052123_4053326_+	PRK10966, PRK10966, exonuclease subunit SbcD; Provisional	NA|1049aa|up_1|NZ_CP050382.1_4053322_4056469_+	PRK10246, PRK10246, exonuclease subunit SbcC; Provisional	NA|395aa|up_0|NZ_CP050382.1_4056594_4057779_+	PRK10091, PRK10091, MFS transport protein AraJ; Provisional	NA|303aa|down_0|NZ_CP050382.1_4058023_4058932_-	PRK09557, PRK09557, fructokinase; Reviewed	NA|304aa|down_1|NZ_CP050382.1_4059056_4059968_+	COG2974, RdgC, DNA recombination-dependent growth factor C [DNA replication, recombination, and repair]	NA|28aa|down_2|NZ_CP050382.1_4060045_4060129_-	NA	NA|95aa|down_3|NZ_CP050382.1_4060614_4060899_-	PRK10579, PRK10579, pyrimidine/purine nucleoside phosphorylase	NA|226aa|down_4|NZ_CP050382.1_4060970_4061648_-	PRK10481, PRK10481, hypothetical protein; Provisional	NA|64aa|down_5|NZ_CP050382.1_4061905_4062097_-	PRK10380, PRK10380, hypothetical protein; Provisional	NA|175aa|down_6|NZ_CP050382.1_4062146_4062671_-	PRK03731, aroL, shikimate kinase AroL	NA|270aa|down_7|NZ_CP050382.1_4063343_4064153_+	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed	NA|372aa|down_8|NZ_CP050382.1_4064169_4065285_-	PRK10245, adrA, diguanylate cyclase AdrA; Provisional	NA|107aa|down_9|NZ_CP050382.1_4065386_4065707_-	PRK11505, PRK11505, phosphate starvation-inducible protein PsiF
GCF_011769865.1_ASM1176986v1	NZ_CP050382	Escherichia coli strain 52148 chromosome, complete genome	10	4697422-4697571	10	CRISPRCasFinder	no	RT	WYL,cas3,csa3,PD-DExK,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Unclear	TGAACGCCTTATCCGACCTACACAGCACTGAACTCGTAGGCCTGATAAGACGCG	54	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,csa3,PD-DExK,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA|59aa|up_9|NZ_CP050382.1_4686986_4687163_-,NA|62aa|up_8|NZ_CP050382.1_4687350_4687536_+,NA|213aa|up_6|NZ_CP050382.1_4688239_4688878_-,NA	NA|59aa|up_9|NZ_CP050382.1_4686986_4687163_-	NA	NA|62aa|up_8|NZ_CP050382.1_4687350_4687536_+	NA	NA|77aa|up_7|NZ_CP050382.1_4687632_4687863_-	COG3311, AlpA, Predicted transcriptional regulator [Transcription]	NA|213aa|up_6|NZ_CP050382.1_4688239_4688878_-	NA	NA|421aa|up_5|NZ_CP050382.1_4688907_4690170_-	PRK09692, PRK09692, integrase; Provisional	NA|340aa|up_4|NZ_CP050382.1_4690614_4691634_+	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|501aa|up_3|NZ_CP050382.1_4691761_4693264_+	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|361aa|up_2|NZ_CP050382.1_4693424_4694507_-	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|367aa|up_1|NZ_CP050382.1_4694506_4695607_-	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|504aa|up_0|NZ_CP050382.1_4695873_4697385_+	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|148aa|down_0|NZ_CP050382.1_4697738_4698182_+	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|952aa|down_1|NZ_CP050382.1_4698181_4701037_+	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|396aa|down_2|NZ_CP050382.1_4701088_4702276_-	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|168aa|down_3|NZ_CP050382.1_4702468_4702972_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|139aa|down_4|NZ_CP050382.1_4703017_4703434_-	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|335aa|down_5|NZ_CP050382.1_4703595_4704600_+	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|151aa|down_6|NZ_CP050382.1_4706522_4706975_-	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|198aa|down_7|NZ_CP050382.1_4707119_4707713_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|238aa|down_8|NZ_CP050382.1_4707783_4708497_+	PRK12742, PRK12742, SDR family oxidoreductase	NA|132aa|down_9|NZ_CP050382.1_4708627_4709023_+	cd02198, YjgH_like, YjgH belongs to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function
