assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_011694695.1_ASM1169469v1	NZ_CP050175	Streptococcus pneumoniae strain PZ900701590 chromosome, complete genome	1	98620-98715	1	CRISPRCasFinder	no		cas3,DEDDh,PrimPol,DinG,RT	Orphan	AATGTGTAAGATTTTTATATATAA	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,PrimPol,DinG,RT	NA|92aa|up_9|NZ_CP050175.1_88925_89201_+,NA|74aa|up_8|NZ_CP050175.1_89154_89376_+,NA|107aa|down_7|NZ_CP050175.1_106569_106890_-	NA|92aa|up_9|NZ_CP050175.1_88925_89201_+	NA	NA|74aa|up_8|NZ_CP050175.1_89154_89376_+	NA	NA|310aa|up_7|NZ_CP050175.1_89694_90624_+	COG4209, LplB, ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism]	NA|308aa|up_6|NZ_CP050175.1_90637_91561_+	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|492aa|up_5|NZ_CP050175.1_91664_93140_+	pfam12010, DUF3502, Domain of unknown function (DUF3502)	NA|329aa|up_4|NZ_CP050175.1_93411_94398_+	PRK00142, PRK00142, rhodanese-related sulfurtransferase	NA|355aa|up_3|NZ_CP050175.1_95665_96730_-	pfam10310, DUF5427, Family of unknown function (DUF5427)	NA|304aa|up_2|NZ_CP050175.1_96791_97703_-	pfam13349, DUF4097, Putative adhesin	NA|198aa|up_1|NZ_CP050175.1_97695_98289_-	COG4709, COG4709, Predicted membrane protein [Function unknown]	NA|109aa|up_0|NZ_CP050175.1_98275_98602_-	COG1695, COG1695, Predicted transcriptional regulators [Transcription]	NA|389aa|down_0|NZ_CP050175.1_98740_99907_-	cd17339, MFS_NIMT_CynX_like, 2-nitroimidazole and cyanate transporters and similar proteins of the Major Facilitator Superfamily of transporters	NA|386aa|down_1|NZ_CP050175.1_99964_101122_+	cd02525, Succinoglycan_BP_ExoA, ExoA is involved in the biosynthesis of succinoglycan	NA|617aa|down_2|NZ_CP050175.1_101163_103014_+	COG1086, COG1086, Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]	NA|211aa|down_3|NZ_CP050175.1_103496_104129_-	cd04302, HAD_5NT, haloacid dehalogenase (HAD)-like 5'-nucleotidases similar to the Pseudomonas aeruginosa PA0065	NA|291aa|down_4|NZ_CP050175.1_104150_105023_-	TIGR00718, Probable_L-serine_dehydratase_alpha_chain, L-serine dehydratase, iron-sulfur-dependent, alpha subunit	NA|224aa|down_5|NZ_CP050175.1_105031_105703_-	COG1760, SdaA, L-serine deaminase [Amino acid transport and metabolism]	NA|191aa|down_6|NZ_CP050175.1_105944_106517_+	cd00118, LysM, Lysin Motif is a small domain involved in binding peptidoglycan	NA|107aa|down_7|NZ_CP050175.1_106569_106890_-	NA	NA|96aa|down_8|NZ_CP050175.1_107320_107608_+	TIGR01653, hypothetical_protein, bacteriocin, lactococcin 972 family	NA|703aa|down_9|NZ_CP050175.1_107659_109768_+	TIGR01654, unnamed_protein_product, bacteriocin-associated integral membrane (putative immunity) protein
GCF_011694695.1_ASM1169469v1	NZ_CP050175	Streptococcus pneumoniae strain PZ900701590 chromosome, complete genome	2	1013340-1013443	2	CRISPRCasFinder	no		cas3,DEDDh,PrimPol,DinG,RT	Orphan	ATAGGGGATTTACCCACTACAAATATTATAGAG	33	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,PrimPol,DinG,RT	NA,NA	NA|214aa|up_9|NZ_CP050175.1_1004338_1004980_-	COG2344, COG2344, AT-rich DNA-binding protein [General function prediction only]	NA|48aa|up_8|NZ_CP050175.1_1005134_1005278_-	pfam15507, DUF4649, Domain of unknown function (DUF4649)	NA|116aa|up_7|NZ_CP050175.1_1005285_1005633_-	pfam08866, DUF1831, Putative amino acid metabolism	NA|372aa|up_6|NZ_CP050175.1_1005637_1006753_-	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]	NA|320aa|up_5|NZ_CP050175.1_1006762_1007722_-	PRK02458, PRK02458, ribose-phosphate pyrophosphokinase; Provisional	NA|190aa|up_4|NZ_CP050175.1_1007834_1008404_-	COG4116, COG4116, Uncharacterized protein conserved in bacteria [Function unknown]	NA|224aa|up_3|NZ_CP050175.1_1008531_1009203_+	COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only]	NA|273aa|up_2|NZ_CP050175.1_1009186_1010005_+	PRK04885, ppnK, inorganic polyphosphate/ATP-NAD kinase; Provisional	NA|299aa|up_1|NZ_CP050175.1_1010001_1010898_+	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	NA|325aa|up_0|NZ_CP050175.1_1010941_1011916_+	PRK09653, eutD, phosphotransacetylase	NA|100aa|down_0|NZ_CP050175.1_1013502_1013802_-	PRK00153, PRK00153, YbaB/EbfC family nucleoid-associated protein	NA|233aa|down_1|NZ_CP050175.1_1014203_1014902_+	COG3619, COG3619, Predicted membrane protein [Function unknown]	NA|105aa|down_2|NZ_CP050175.1_1015089_1015404_+	PRK05573, rplU, 50S ribosomal protein L21; Validated	NA|115aa|down_3|NZ_CP050175.1_1015419_1015764_+	COG2868, COG2868, Predicted ribosomal protein [Translation, ribosomal structure and biogenesis]	NA|98aa|down_4|NZ_CP050175.1_1015780_1016074_+	PRK05435, rpmA, 50S ribosomal protein L27; Validated	NA|306aa|down_5|NZ_CP050175.1_1016920_1017838_+	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase	NA|283aa|down_6|NZ_CP050175.1_1017930_1018779_-	COG1284, COG1284, Uncharacterized conserved protein [Function unknown]	NA|280aa|down_7|NZ_CP050175.1_1018920_1019760_+	TIGR00762, DegV, EDD domain protein, DegV family	NA|92aa|down_8|NZ_CP050175.1_1019866_1020142_+	cd13831, HU, histone-like DNA-binding protein HU	NA|419aa|down_9|NZ_CP050175.1_1020346_1021603_+	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
GCF_011694695.1_ASM1169469v1	NZ_CP050175	Streptococcus pneumoniae strain PZ900701590 chromosome, complete genome	3	1074410-1074489	3	CRISPRCasFinder	no		cas3,DEDDh,PrimPol,DinG,RT	Orphan	GGGCCAAGCGGTGGCGGACACCAGAA	26	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,PrimPol,DinG,RT	NA|96aa|up_7|NZ_CP050175.1_1064977_1065265_+,NA|163aa|up_6|NZ_CP050175.1_1065266_1065755_+,NA|81aa|up_4|NZ_CP050175.1_1067652_1067895_+,NA|285aa|up_3|NZ_CP050175.1_1067911_1068766_+,NA|51aa|down_3|NZ_CP050175.1_1077011_1077164_+,NA|74aa|down_7|NZ_CP050175.1_1081282_1081504_+	NA|215aa|up_9|NZ_CP050175.1_1063214_1063859_+	pfam13338, AbiEi_4, Transcriptional regulator, AbiEi antitoxin	NA|279aa|up_8|NZ_CP050175.1_1063858_1064695_+	pfam08843, AbiEii, Nucleotidyl transferase AbiEii toxin, Type IV TA system	NA|96aa|up_7|NZ_CP050175.1_1064977_1065265_+	NA	NA|163aa|up_6|NZ_CP050175.1_1065266_1065755_+	NA	NA|626aa|up_5|NZ_CP050175.1_1065754_1067632_+	pfam02534, T4SS-DNA_transf, Type IV secretory system Conjugative DNA transfer	NA|81aa|up_4|NZ_CP050175.1_1067652_1067895_+	NA	NA|285aa|up_3|NZ_CP050175.1_1067911_1068766_+	NA	NA|120aa|up_2|NZ_CP050175.1_1068819_1069179_+	pfam12666, PrgI, PrgI family protein	NA|772aa|up_1|NZ_CP050175.1_1069171_1071487_+	TIGR02746, hypothetical_protein, type-IV secretion system protein TraC	NA|938aa|up_0|NZ_CP050175.1_1071498_1074312_+	pfam18013, Phage_lysozyme2, Phage tail lysozyme	NA|105aa|down_0|NZ_CP050175.1_1074878_1075193_+	pfam06125, DUF961, Bacterial protein of unknown function (DUF961)	NA|129aa|down_1|NZ_CP050175.1_1075208_1075595_+	pfam06125, DUF961, Bacterial protein of unknown function (DUF961)	NA|462aa|down_2|NZ_CP050175.1_1075623_1077009_+	COG1674, FtsK, DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning]	NA|51aa|down_3|NZ_CP050175.1_1077011_1077164_+	NA	NA|473aa|down_4|NZ_CP050175.1_1077186_1078605_+	pfam02486, Rep_trans, Replication initiation factor	NA|28aa|down_5|NZ_CP050175.1_1078653_1078737_+	pfam06308, ErmC, 23S rRNA methylase leader peptide (ErmC)	NA|246aa|down_6|NZ_CP050175.1_1078861_1079599_+	pfam00398, RrnaAD, Ribosomal RNA adenine dimethylase	NA|74aa|down_7|NZ_CP050175.1_1081282_1081504_+	NA	NA|166aa|down_8|NZ_CP050175.1_1081620_1082118_+	pfam07275, ArdA, Antirestriction protein (ArdA)	NA|169aa|down_9|NZ_CP050175.1_1082092_1082599_+	pfam12648, TcpE, TcpE family
