assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_011617105.1_ASM1161710v1	NZ_CP050150	Hafnia alvei strain A23BA chromosome, complete genome	1	1120270-1120361	1	CRISPRCasFinder	no		cas3,WYL,DEDDh,DinG,csa3,cas6f,cas7f,cas5f,cas8f,cas3f,cas1	Orphan	CTGCTCCTCCCCTGCGAAGGGGGAGGCT	28	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,DEDDh,DinG,csa3,cas6f,cas7f,cas5f,cas8f,cas3f,cas1	NA,NA|115aa|down_4|NZ_CP050150.1_1125951_1126296_-,NA|309aa|down_5|NZ_CP050150.1_1126361_1127288_-	NA|532aa|up_9|NZ_CP050150.1_1107142_1108738_-	cd17321, MFS_MMR_MDR_like, Methylenomycin A resistance protein (also called MMR peptide) and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|557aa|up_8|NZ_CP050150.1_1108823_1110494_-	cd17321, MFS_MMR_MDR_like, Methylenomycin A resistance protein (also called MMR peptide) and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|550aa|up_7|NZ_CP050150.1_1110593_1112243_-	cd01300, YtcJ_like, YtcJ_like metal dependent amidohydrolases	NA|485aa|up_6|NZ_CP050150.1_1112404_1113859_+	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|546aa|up_5|NZ_CP050150.1_1114140_1115778_+	PRK05380, pyrG, CTP synthetase; Validated	NA|435aa|up_4|NZ_CP050150.1_1115861_1117166_+	PRK00077, eno, enolase; Provisional	NA|76aa|up_3|NZ_CP050150.1_1117280_1117508_-	PRK11415, PRK11415, hypothetical protein; Provisional	NA|256aa|up_2|NZ_CP050150.1_1117863_1118631_+	cd13624, PBP2_Arg_Lys_His, Substrate binding domain of the arginine-, lysine-, histidine-binding protein ArtJ; the type 2 periplasmic binding protein fold	NA|255aa|up_1|NZ_CP050150.1_1118726_1119491_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|241aa|up_0|NZ_CP050150.1_1119477_1120200_+	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|478aa|down_0|NZ_CP050150.1_1120384_1121818_-	PRK10580, proY, putative proline-specific permease; Provisional	NA|512aa|down_1|NZ_CP050150.1_1121919_1123455_-	PRK09367, PRK09367, histidine ammonia-lyase; Provisional	NA|563aa|down_2|NZ_CP050150.1_1123454_1125143_-	PRK05414, PRK05414, urocanate hydratase; Provisional	NA|152aa|down_3|NZ_CP050150.1_1125485_1125941_-	cd11743, Cthe_2751_like, Uncharacterized protein domain similar to Clostridium thermocellum 2751	NA|115aa|down_4|NZ_CP050150.1_1125951_1126296_-	NA	NA|309aa|down_5|NZ_CP050150.1_1126361_1127288_-	NA	NA|285aa|down_6|NZ_CP050150.1_1127609_1128464_-	COG3118, COG3118, Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]	NA|258aa|down_7|NZ_CP050150.1_1128538_1129312_-	PRK08017, PRK08017, SDR family oxidoreductase	NA|214aa|down_8|NZ_CP050150.1_1129366_1130008_-	PRK10528, PRK10528, multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional	NA|229aa|down_9|NZ_CP050150.1_1129975_1130662_+	PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional
GCF_011617105.1_ASM1161710v1	NZ_CP050150	Hafnia alvei strain A23BA chromosome, complete genome	2	2882713-2883159	2,1,1	CRISPRCasFinder,CRT,PILER-CR	no		cas3,WYL,DEDDh,DinG,csa3,cas6f,cas7f,cas5f,cas8f,cas3f,cas1	Orphan	TTTCTAAGCTGCCTGTACGGCAGTGAAC,TTTCTAAGCTGCCTGTACGGCAGTGAAC,TTTCTAAGCTGCCTGTACGGCAGTGAAC	28,28,28	0	0	NA	NA	I-F:I-F:I-F	7,7,6	7	Orphan	cas3,WYL,DEDDh,DinG,csa3,cas6f,cas7f,cas5f,cas8f,cas3f,cas1	NA,NA	NA|741aa|up_9|NZ_CP050150.1_2869282_2871505_+	PRK11465, PRK11465, putative mechanosensitive channel protein; Provisional	NA|316aa|up_8|NZ_CP050150.1_2871555_2872503_-	PRK11727, PRK11727, 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF	NA|212aa|up_7|NZ_CP050150.1_2872741_2873377_+	COG1853, COG1853, Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family [General function prediction only]	NA|525aa|up_6|NZ_CP050150.1_2873673_2875248_+	PRK10551, PRK10551, cyclic di-GMP phosphodiesterase	NA|609aa|up_5|NZ_CP050150.1_2875490_2877317_+	cd08497, PBP2_NikA_DppA_OppA_like_14, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|366aa|up_4|NZ_CP050150.1_2877328_2878426_+	PRK15133, PRK15133, microcin C ABC transporter permease YejB; Provisional	NA|341aa|up_3|NZ_CP050150.1_2878425_2879448_+	COG4239, COG4239, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|536aa|up_2|NZ_CP050150.1_2879449_2881057_+	PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional	NA|132aa|up_1|NZ_CP050150.1_2881137_2881533_-	PRK11835, PRK11835, hypothetical protein; Provisional	NA|151aa|up_0|NZ_CP050150.1_2882198_2882651_-	pfam12883, DUF3828, Protein of unknown function (DUF3828)	NA|404aa|down_0|NZ_CP050150.1_2883504_2884716_-	PRK11102, PRK11102, Bcr/CflA family multidrug efflux MFS transporter	NA|241aa|down_1|NZ_CP050150.1_2884825_2885548_-	PRK10839, PRK10839, 16S rRNA pseudouridine(516) synthase RsuA	NA|80aa|down_2|NZ_CP050150.1_2885861_2886101_+	pfam10678, DUF2492, Protein of unknown function (DUF2492)	NA|587aa|down_3|NZ_CP050150.1_2886123_2887884_+	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]	NA|95aa|down_4|NZ_CP050150.1_2888030_2888315_+	PRK05943, PRK05943, 50S ribosomal protein L25; Reviewed	NA|336aa|down_5|NZ_CP050150.1_2888410_2889418_-	PRK00378, PRK00378, nucleoid-associated protein NdpA; Validated	NA|76aa|down_6|NZ_CP050150.1_2889626_2889854_+	PRK13689, PRK13689, hypothetical protein; Provisional	NA|595aa|down_7|NZ_CP050150.1_2889883_2891668_+	COG3083, COG3083, Predicted hydrolase of alkaline phosphatase superfamily [General function prediction only]	NA|147aa|down_8|NZ_CP050150.1_2891877_2892318_-	cd04683, Nudix_Hydrolase_24, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|383aa|down_9|NZ_CP050150.1_2892766_2893915_+	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain
GCF_011617105.1_ASM1161710v1	NZ_CP050150	Hafnia alvei strain A23BA chromosome, complete genome	3	2953539-2954946	2,3,2	PILER-CR,CRISPRCasFinder,CRT	no	cas6f,cas7f,cas5f,cas8f,cas3f,cas1	cas3,WYL,DEDDh,DinG,csa3,cas6f,cas7f,cas5f,cas8f,cas3f,cas1	Type I-F	TTTCTAAGCTGCCTGTACGGCAGTGAAC,TTTCTAAGCTGCCTGTACGGCAGTGAAC,TTTCTAAGCTGCCTGTACGGCAGTGAAC	28,28,28	1	1	2954647-2954678	NZ_CP050150.1_3124699-3124730	I-F:I-F:I-F	23,23,23	23	TypeI-F	cas3,WYL,DEDDh,DinG,csa3,cas6f,cas7f,cas5f,cas8f,cas3f,cas1	NA|86aa|up_8|NZ_CP050150.1_2942413_2942671_-,NA	NA|193aa|up_9|NZ_CP050150.1_2941707_2942286_-	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|86aa|up_8|NZ_CP050150.1_2942413_2942671_-	NA	NA|362aa|up_7|NZ_CP050150.1_2943096_2944182_+	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism]	NA|348aa|up_6|NZ_CP050150.1_2944181_2945225_+	COG3594, NolL, Fucose 4-O-acetylase and related acetyltransferases [Carbohydrate transport and metabolism]	cas6f|185aa|up_5|NZ_CP050150.1_2945260_2945815_-	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4)	cas7f|333aa|up_4|NZ_CP050150.1_2945827_2946826_-	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas5f|317aa|up_3|NZ_CP050150.1_2946850_2947801_-	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas8f|429aa|up_2|NZ_CP050150.1_2947800_2949087_-	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1	cas3f|1093aa|up_1|NZ_CP050150.1_2949111_2952390_-	cd09673, Cas3_Cas2_I-F, CRISPR/Cas system-associated protein Cas3/Cas2	cas1|344aa|up_0|NZ_CP050150.1_2952386_2953418_-	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	NA|151aa|down_0|NZ_CP050150.1_2955085_2955538_-	PRK10678, moaE, molybdopterin synthase catalytic subunit MoaE	NA|81aa|down_1|NZ_CP050150.1_2955540_2955783_-	PRK11130, moaD, molybdopterin synthase small subunit; Provisional	NA|161aa|down_2|NZ_CP050150.1_2955779_2956262_-	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|329aa|down_3|NZ_CP050150.1_2956298_2957285_-	PRK00164, moaA, GTP 3',8-cyclase MoaA	NA|303aa|down_4|NZ_CP050150.1_2957680_2958589_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|398aa|down_5|NZ_CP050150.1_2958678_2959872_-	PRK03673, PRK03673, nicotinamide mononucleotide deamidase-related protein YfaY	NA|404aa|down_6|NZ_CP050150.1_2960080_2961292_+	PRK15132, PRK15132, tyrosine transporter TyrP; Provisional	NA|342aa|down_7|NZ_CP050150.1_2961472_2962498_+	PRK12282, PRK12282, tryptophanyl-tRNA synthetase II; Reviewed	NA|182aa|down_8|NZ_CP050150.1_2962580_2963126_-	pfam07437, YfaZ, YfaZ precursor	NA|478aa|down_9|NZ_CP050150.1_2963514_2964948_+	cd08156, catalase_clade_3, Clade 3 of the heme-binding enzyme catalase
GCF_011617105.1_ASM1161710v1	NZ_CP050150	Hafnia alvei strain A23BA chromosome, complete genome	4	3033996-3034142	4	CRISPRCasFinder	no		cas3,WYL,DEDDh,DinG,csa3,cas6f,cas7f,cas5f,cas8f,cas3f,cas1	Orphan	CGGACGCCTGCACGGTTTAAATGTGGAGCTCAATGTTTTAGGCGGACGTAA	51	1	2	3034047-3034091|3034047-3034091	NZ_CP050150.1_2321862-2321906|NZ_CP050150.1_3285287-3285331	NA	1	1	Orphan	cas3,WYL,DEDDh,DinG,csa3,cas6f,cas7f,cas5f,cas8f,cas3f,cas1	NA,NA	NA|599aa|up_9|NZ_CP050150.1_3022644_3024441_-	PRK11742, PRK11742, bifunctional NADH:ubiquinone oxidoreductase subunit C/D; Provisional	NA|225aa|up_8|NZ_CP050150.1_3024571_3025246_-	COG0377, NuoB, NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductases [Energy production and conversion]	NA|147aa|up_7|NZ_CP050150.1_3025294_3025735_-	PRK06602, PRK06602, NADH:ubiquinone oxidoreductase subunit A; Validated	NA|317aa|up_6|NZ_CP050150.1_3026409_3027360_-	PRK15092, PRK15092, DNA-binding transcriptional repressor LrhA; Provisional	NA|228aa|up_5|NZ_CP050150.1_3027724_3028408_-	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|437aa|up_4|NZ_CP050150.1_3028564_3029875_+	COG2897, SseA, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]	NA|207aa|up_3|NZ_CP050150.1_3029930_3030551_-	COG0558, PgsA, Phosphatidylglycerophosphate synthase [Lipid metabolism]	NA|197aa|up_2|NZ_CP050150.1_3030543_3031134_-	COG2128, COG2128, Uncharacterized conserved protein [Function unknown]	NA|407aa|up_1|NZ_CP050150.1_3031433_3032654_+	PRK09265, PRK09265, aminotransferase AlaT; Validated	NA|202aa|up_0|NZ_CP050150.1_3032768_3033374_+	PRK03826, PRK03826, 5'-nucleotidase; Provisional	NA|611aa|down_0|NZ_CP050150.1_3034194_3036027_-	COG0471, CitT, Di- and tricarboxylate transporters [Inorganic ion transport and metabolism]	NA|218aa|down_1|NZ_CP050150.1_3036183_3036837_-	PRK11587, PRK11587, putative phosphatase; Provisional	NA|165aa|down_2|NZ_CP050150.1_3036852_3037347_-	PRK05445, PRK05445, YfbU family protein	NA|152aa|down_3|NZ_CP050150.1_3037602_3038058_-	PRK01816, PRK01816, hypothetical protein; Provisional	NA|400aa|down_4|NZ_CP050150.1_3038462_3039662_+	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed	NA|718aa|down_5|NZ_CP050150.1_3039817_3041971_+	PRK05632, PRK05632, phosphate acetyltransferase; Reviewed	NA|325aa|down_6|NZ_CP050150.1_3042052_3043027_-	COG3958, COG3958, Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]	NA|277aa|down_7|NZ_CP050150.1_3043023_3043854_-	cd02012, TPP_TK, Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates	NA|462aa|down_8|NZ_CP050150.1_3043863_3045249_-	PRK12996, ulaA, PTS ascorbate transporter subunit IIC	NA|90aa|down_9|NZ_CP050150.1_3045289_3045559_-	cd05563, PTS_IIB_ascorbate, PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)
GCF_011617105.1_ASM1161710v1	NZ_CP050150	Hafnia alvei strain A23BA chromosome, complete genome	5	4179384-4179490	5	CRISPRCasFinder	no		cas3,WYL,DEDDh,DinG,csa3,cas6f,cas7f,cas5f,cas8f,cas3f,cas1	Orphan	GGGAGGGAACCGTTCAGCGTTGATCGAAAGATTCTCGAGC	40	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,DEDDh,DinG,csa3,cas6f,cas7f,cas5f,cas8f,cas3f,cas1	NA|144aa|up_8|NZ_CP050150.1_4170618_4171050_+,NA	NA|258aa|up_9|NZ_CP050150.1_4169483_4170257_+	PRK07063, PRK07063, SDR family oxidoreductase	NA|144aa|up_8|NZ_CP050150.1_4170618_4171050_+	NA	NA|479aa|up_7|NZ_CP050150.1_4171129_4172566_-	PRK15014, PRK15014, 6-phospho-beta-glucosidase BglA; Provisional	NA|506aa|up_6|NZ_CP050150.1_4172603_4174121_-	TIGR01995, beta-glucosides_PTS_EIIBCA, PTS system, beta-glucoside-specific IIABC component	NA|244aa|up_5|NZ_CP050150.1_4174300_4175032_-	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|438aa|up_4|NZ_CP050150.1_4175177_4176491_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|112aa|up_3|NZ_CP050150.1_4176716_4177052_+	pfam09400, DUF2002, Protein of unknown function (DUF2002)	NA|231aa|up_2|NZ_CP050150.1_4177158_4177851_-	COG1346, LrgB, Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]	NA|147aa|up_1|NZ_CP050150.1_4177847_4178288_-	COG1380, COG1380, Putative effector of murein hydrolase LrgA [General function prediction only]	NA|305aa|up_0|NZ_CP050150.1_4178434_4179349_+	cd08438, PBP2_CidR, The C-terminal substrate binding domain of LysR-like transcriptional regulator CidR, contains the type 2 periplasmic binding fold	NA|550aa|down_0|NZ_CP050150.1_4179563_4181213_-	TIGR00831, Putative_Na+/H+_exchanger_Rv2287/MT2345/Mb2309	NA|456aa|down_1|NZ_CP050150.1_4181450_4182818_-	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and    metabolism]	NA|439aa|down_2|NZ_CP050150.1_4183071_4184388_-	PRK09228, PRK09228, guanine deaminase; Provisional	NA|463aa|down_3|NZ_CP050150.1_4184425_4185814_-	TIGR03173, pbuX, xanthine permease	NA|959aa|down_4|NZ_CP050150.1_4186045_4188922_-	PRK09800, PRK09800, putative hypoxanthine oxidase; Provisional	NA|260aa|down_5|NZ_CP050150.1_4188923_4189703_-	PRK09799, PRK09799, putative oxidoreductase; Provisional	NA|443aa|down_6|NZ_CP050150.1_4189768_4191097_-	TIGR03314, Se_ssnA, putative selenium metabolism protein SsnA	NA|1029aa|down_7|NZ_CP050150.1_4191099_4194186_-	PRK09853, PRK09853, putative selenate reductase subunit YgfK; Provisional	NA|212aa|down_8|NZ_CP050150.1_4194575_4195211_-	TIGR03310, matur_MocA_YgfJ, molybdenum cofactor cytidylyltransferase	NA|271aa|down_9|NZ_CP050150.1_4195242_4196055_+	TIGR03172, Uncharacterized_protein_YqeC, probable selenium-dependent hydroxylase accessory protein YqeC
