assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_011604725.1_ASM1160472v1	NZ_CP050068	Klebsiella aerogenes strain 035 plasmid p35, complete sequence	1	305262-306197	1,1	CRISPRCasFinder,PILER-CR	no	DinG	c2c9_V-U4,csa3,c2c10_CAS-V-U3,DinG,WYL	Type IV-A	CCGATAACCCCCGCATGCGGGGGGAATAC,CCGATAACCCCCGCATGCGGGGGGAATAC	29,29	0	0	NA	NA	NA:NA	15,2	15	Orphan	cas3,csa3,DEDDh,DinG,WYL,RT,c2c9_V-U4,c2c10_CAS-V-U3	NA|116aa|up_9|NZ_CP050068.1_295664_296012_-,NA|356aa|up_8|NZ_CP050068.1_296167_297235_-,NA|99aa|up_7|NZ_CP050068.1_297303_297600_-,NA|126aa|up_6|NZ_CP050068.1_297830_298208_+,NA|87aa|up_4|NZ_CP050068.1_300866_301127_+,NA|236aa|down_1|NZ_CP050068.1_307298_308006_-,NA|154aa|down_4|NZ_CP050068.1_310445_310907_-	NA|116aa|up_9|NZ_CP050068.1_295664_296012_-	NA	NA|356aa|up_8|NZ_CP050068.1_296167_297235_-	NA	NA|99aa|up_7|NZ_CP050068.1_297303_297600_-	NA	NA|126aa|up_6|NZ_CP050068.1_297830_298208_+	NA	NA|53aa|up_5|NZ_CP050068.1_299985_300144_-	PRK09738, PRK09738, small toxic polypeptide; Provisional	NA|87aa|up_4|NZ_CP050068.1_300866_301127_+	NA	NA|157aa|up_3|NZ_CP050068.1_301235_301706_-	pfam08808, RES, RES domain	NA|148aa|up_2|NZ_CP050068.1_301702_302146_-	TIGR02293, conserved_protein_of_unknown_function, putative toxin-antitoxin system antitoxin component, TIGR02293 family	NA|424aa|up_1|NZ_CP050068.1_302245_303517_-	PRK03609, umuC, translesion error-prone DNA polymerase V subunit UmuC	NA|141aa|up_0|NZ_CP050068.1_303516_303939_-	PRK10276, PRK10276, translesion error-prone DNA polymerase V autoproteolytic subunit	NA|264aa|down_0|NZ_CP050068.1_306262_307054_-	pfam08317, Spc7, Spc7 kinetochore protein	NA|236aa|down_1|NZ_CP050068.1_307298_308006_-	NA	DinG|625aa|down_2|NZ_CP050068.1_307999_309874_-	COG1199, DinG, Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]	NA|189aa|down_3|NZ_CP050068.1_309876_310443_-	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	NA|154aa|down_4|NZ_CP050068.1_310445_310907_-	NA	NA|136aa|down_5|NZ_CP050068.1_311017_311425_-	TIGR02047, putative_regulatory_protein, Cd(II)/Pb(II)-responsive transcriptional regulator	NA|299aa|down_6|NZ_CP050068.1_311520_312417_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|171aa|down_7|NZ_CP050068.1_312420_312933_+	PRK14776, PRK14776, lipoprotein signal peptidase; Provisional	NA|430aa|down_8|NZ_CP050068.1_312954_314244_+	pfam01610, DDE_Tnp_ISL3, Transposase	NA|339aa|down_9|NZ_CP050068.1_314516_315533_-	COG3039, COG3039, Transposase and inactivated derivatives, IS5 family [DNA replication, recombination, and repair]
GCF_011604725.1_ASM1160472v1	NZ_CP050067	Klebsiella aerogenes strain 035 chromosome, complete genome	1	936886-937006	1	CRISPRCasFinder	no		cas3,csa3,DEDDh,DinG,WYL	Orphan	GTAGCCCGGATAAGGCGTAAGCCGCTAACCGGG	33	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG,WYL,RT,c2c9_V-U4,c2c10_CAS-V-U3	NA|102aa|up_0|NZ_CP050067.1_936019_936325_-,NA	NA|292aa|up_9|NZ_CP050067.1_920580_921456_+	PRK00052, PRK00052, prolipoprotein diacylglyceryl transferase; Reviewed	NA|265aa|up_8|NZ_CP050067.1_921462_922257_+	PRK01827, thyA, thymidylate synthase; Reviewed	NA|155aa|up_7|NZ_CP050067.1_922443_922908_+	PRK10506, PRK10506, prepilin peptidase-dependent protein	NA|188aa|up_6|NZ_CP050067.1_922898_923462_+	PRK10557, PRK10557, prepilin peptidase-dependent protein	NA|136aa|up_5|NZ_CP050067.1_923458_923866_+	PRK11521, PRK11521, DUF2509 family protein	NA|108aa|up_4|NZ_CP050067.1_923850_924174_+	PRK10332, PRK10332, prepilin-type N-terminal cleavage/methylation domain-containing protein	NA|1124aa|up_3|NZ_CP050067.1_924186_927558_+	PRK11069, recC, exodeoxyribonuclease V subunit gamma	NA|962aa|up_2|NZ_CP050067.1_927721_930607_+	PRK15101, PRK15101, protease3; Provisional	NA|613aa|up_1|NZ_CP050067.1_934145_935984_+	PRK10875, recD, exodeoxyribonuclease V subunit alpha	NA|102aa|up_0|NZ_CP050067.1_936019_936325_-	NA	NA|444aa|down_0|NZ_CP050067.1_937016_938348_-	PRK05279, PRK05279, N-acetylglutamate synthase; Validated	NA|418aa|down_1|NZ_CP050067.1_938574_939828_+	PRK10319, PRK10319, N-acetylmuramoyl-L-alanine amidase AmiA	NA|366aa|down_2|NZ_CP050067.1_940450_941548_+	PRK11162, mltA, murein transglycosylase A; Provisional	NA|270aa|down_3|NZ_CP050067.1_941627_942437_+	PRK15116, PRK15116, sulfur acceptor protein CsdL; Provisional	NA|144aa|down_4|NZ_CP050067.1_942881_943313_-	PRK15019, PRK15019, cysteine desulfurase sulfur acceptor subunit CsdE	NA|402aa|down_5|NZ_CP050067.1_943312_944518_-	PRK10874, PRK10874, cysteine desulfurase CsdA	NA|306aa|down_6|NZ_CP050067.1_944950_945868_+	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional	NA|132aa|down_7|NZ_CP050067.1_945911_946307_+	PRK10873, PRK10873, hypothetical protein; Provisional	NA|367aa|down_8|NZ_CP050067.1_946299_947400_+	PRK11760, PRK11760, putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional	NA|253aa|down_9|NZ_CP050067.1_947443_948202_-	PRK09482, PRK09482, flap endonuclease-like protein; Provisional
GCF_011604725.1_ASM1160472v1	NZ_CP050067	Klebsiella aerogenes strain 035 chromosome, complete genome	2	1022623-1022775	2	CRISPRCasFinder	no		cas3,csa3,DEDDh,DinG,WYL	Orphan	CGTTATTTTGTCGGATGGCGCTACGCTTATCCGACCTATGGTTCATG	47	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG,WYL,RT,c2c9_V-U4,c2c10_CAS-V-U3	NA,NA	NA|784aa|up_9|NZ_CP050067.1_1011699_1014051_-	TIGR01786, hemoglobin-haptoglobin-binding_protein, TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein	NA|98aa|up_8|NZ_CP050067.1_1014250_1014544_+	COG3526, COG3526, Uncharacterized protein conserved in bacteria [Posttranslational modification, protein turnover, chaperones]	NA|570aa|up_7|NZ_CP050067.1_1014559_1016269_-	PRK08327, PRK08327, thiamine pyrophosphate-requiring protein	NA|314aa|up_6|NZ_CP050067.1_1016304_1017246_-	PRK09903, PRK09903, transporter YfdV	NA|296aa|up_5|NZ_CP050067.1_1017429_1018317_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|114aa|up_4|NZ_CP050067.1_1018377_1018719_+	pfam11756, YgbA_NO, Nitrous oxide-stimulated promoter	NA|285aa|up_3|NZ_CP050067.1_1019012_1019867_-	COG1108, ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components [Inorganic ion transport and metabolism]	NA|283aa|up_2|NZ_CP050067.1_1019860_1020709_-	pfam00950, ABC-3, ABC 3 transport family	NA|274aa|up_1|NZ_CP050067.1_1020705_1021527_-	PRK15056, PRK15056, manganese/iron ABC transporter ATP-binding protein	NA|306aa|up_0|NZ_CP050067.1_1021523_1022441_-	cd01137, PsaA, Metal binding protein PsaA	NA|686aa|down_0|NZ_CP050067.1_1022853_1024911_-	PRK15429, PRK15429, formate hydrogenlyase transcriptional activator FlhA	NA|337aa|down_1|NZ_CP050067.1_1025064_1026075_-	TIGR02124, Hydrogenase_expression/formation_protein_HypE, hydrogenase expression/formation protein HypE	NA|374aa|down_2|NZ_CP050067.1_1026071_1027193_-	PRK15062, PRK15062, hydrogenase isoenzymes formation protein HypD; Provisional	NA|91aa|down_3|NZ_CP050067.1_1027192_1027465_-	PRK10409, PRK10409, HypC/HybG/HupF family hydrogenase formation chaperone	NA|291aa|down_4|NZ_CP050067.1_1027455_1028328_-	PRK10463, PRK10463, hydrogenase nickel incorporation protein HypB; Provisional	NA|115aa|down_5|NZ_CP050067.1_1028334_1028679_-	PRK03681, hypA, hydrogenase/urease nickel incorporation protein HypA	NA|150aa|down_6|NZ_CP050067.1_1028891_1029341_+	PRK10198, PRK10198, formate hydrogenlyase regulator HycA	NA|203aa|down_7|NZ_CP050067.1_1029423_1030032_+	cd10554, HycB_like, HycB, HydN and similar proteins	NA|609aa|down_8|NZ_CP050067.1_1030028_1031855_+	PRK08042, PRK08042, formate hydrogenlyase subunit 3; Reviewed	NA|308aa|down_9|NZ_CP050067.1_1031857_1032781_+	COG0650, HyfC, Formate hydrogenlyase subunit 4 [Energy production and conversion]
GCF_011604725.1_ASM1160472v1	NZ_CP050067	Klebsiella aerogenes strain 035 chromosome, complete genome	3	3138785-3138915	3	CRISPRCasFinder	no		cas3,csa3,DEDDh,DinG,WYL	Orphan	GCTGCGCAGGTTGATAAGCCTGC	23	0	0	NA	NA	NA	2	2	Orphan	cas3,csa3,DEDDh,DinG,WYL,RT,c2c9_V-U4,c2c10_CAS-V-U3	NA|264aa|up_7|NZ_CP050067.1_3127303_3128095_+,NA|159aa|down_6|NZ_CP050067.1_3148432_3148909_-	NA|761aa|up_9|NZ_CP050067.1_3124015_3126298_+	cd01678, PFL1, Pyruvate formate lyase 1	NA|247aa|up_8|NZ_CP050067.1_3126489_3127230_+	PRK11145, pflA, pyruvate formate lyase 1-activating protein	NA|264aa|up_7|NZ_CP050067.1_3127303_3128095_+	NA	NA|383aa|up_6|NZ_CP050067.1_3128158_3129307_-	PRK03633, PRK03633, putative MFS family transporter protein; Provisional	NA|288aa|up_5|NZ_CP050067.1_3129580_3130444_-	pfam04976, DmsC, DMSO reductase anchor subunit (DmsC)	NA|206aa|up_4|NZ_CP050067.1_3130445_3131063_-	TIGR02951, anaerobic_dimethyl_sulfoxide_reductase_subunit_B, DMSO reductase, iron-sulfur subunit	NA|813aa|up_3|NZ_CP050067.1_3131073_3133512_-	PRK14990, PRK14990, anaerobic dimethyl sulfoxide reductase subunit A; Provisional	NA|431aa|up_2|NZ_CP050067.1_3133706_3134999_-	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|448aa|up_1|NZ_CP050067.1_3135091_3136435_-	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|204aa|up_0|NZ_CP050067.1_3136443_3137055_-	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|165aa|down_0|NZ_CP050067.1_3141425_3141920_-	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|323aa|down_1|NZ_CP050067.1_3142452_3143421_+	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|589aa|down_2|NZ_CP050067.1_3143535_3145302_+	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|574aa|down_3|NZ_CP050067.1_3145302_3147024_+	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|235aa|down_4|NZ_CP050067.1_3147066_3147771_+	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|73aa|down_5|NZ_CP050067.1_3148130_3148349_+	PRK00276, infA, translation initiation factor IF-1; Validated	NA|159aa|down_6|NZ_CP050067.1_3148432_3148909_-	NA	NA|760aa|down_7|NZ_CP050067.1_3149007_3151287_-	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|106aa|down_8|NZ_CP050067.1_3151317_3151635_-	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|74aa|down_9|NZ_CP050067.1_3151959_3152181_+	PRK14998, PRK14998, cold shock-like protein CspD; Provisional
GCF_011604725.1_ASM1160472v1	NZ_CP050067	Klebsiella aerogenes strain 035 chromosome, complete genome	4	4435546-4435674	4	CRISPRCasFinder	no		cas3,csa3,DEDDh,DinG,WYL	Orphan	TTCCCGGGTCGCGGCGTTCCGCCTTACCCGGCCTACAG	38	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG,WYL,RT,c2c9_V-U4,c2c10_CAS-V-U3	NA,NA	NA|109aa|up_9|NZ_CP050067.1_4423973_4424300_+	pfam18593, CdiI_2, CdiI immunity protein	NA|96aa|up_8|NZ_CP050067.1_4424361_4424649_-	pfam06069, PerC, PerC transcriptional activator	NA|189aa|up_7|NZ_CP050067.1_4424979_4425546_-	cd06170, LuxR_C_like, C-terminal DNA-binding domain of LuxR-like proteins	NA|816aa|up_6|NZ_CP050067.1_4426196_4428644_+	PRK10049, pgaA, outer membrane protein PgaA; Provisional	NA|672aa|up_5|NZ_CP050067.1_4428652_4430668_+	PRK14582, pgaB, poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB	NA|444aa|up_4|NZ_CP050067.1_4430660_4431992_+	PRK11204, PRK11204, N-glycosyltransferase; Provisional	NA|145aa|up_3|NZ_CP050067.1_4431988_4432423_+	PRK14584, hmsS, hemin storage system protein; Provisional	NA|264aa|up_2|NZ_CP050067.1_4432480_4433272_-	cd03023, DsbA_Com1_like, DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti	NA|228aa|up_1|NZ_CP050067.1_4433491_4434175_+	TIGR03717, R_switched_YjbE, integral membrane protein, YjbE family	NA|102aa|up_0|NZ_CP050067.1_4435233_4435539_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|124aa|down_0|NZ_CP050067.1_4435731_4436103_-	pfam10784, Plasmid_stab_B, Plasmid stability protein	NA|319aa|down_1|NZ_CP050067.1_4436112_4437069_-	pfam06406, StbA, StbA protein	NA|472aa|down_2|NZ_CP050067.1_4437343_4438759_-	PRK10429, PRK10429, melibiose:sodium transporter MelB	NA|451aa|down_3|NZ_CP050067.1_4438851_4440204_-	PRK15076, PRK15076, alpha-galactosidase; Provisional	NA|313aa|down_4|NZ_CP050067.1_4440443_4441382_+	PRK10371, PRK10371, transcriptional regulator MelR	NA|501aa|down_5|NZ_CP050067.1_4441432_4442935_-	PRK10642, PRK10642, proline/glycine betaine transporter ProP	NA|112aa|down_6|NZ_CP050067.1_4443469_4443805_+	PRK10220, PRK10220, phnA family protein	NA|145aa|down_7|NZ_CP050067.1_4444089_4444524_+	PRK10148, PRK10148, VOC family metalloprotein YjdN	NA|242aa|down_8|NZ_CP050067.1_4444680_4445406_+	PRK10079, PRK10079, phosphonate metabolism transcriptional regulator PhnF; Provisional	NA|151aa|down_9|NZ_CP050067.1_4445406_4445859_+	pfam06754, PhnG, Phosphonate metabolism protein PhnG
