assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_011492985.1_ASM1149298v1	NZ_CP046716	Escherichia coli strain T16R chromosome, complete genome	1	931244-931405	1	CRISPRCasFinder	no		c2c9_V-U4,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,WYL,DinG	Orphan	TACCAGGCTGCTCCACCCCGCGTCACCGTACTGCTTTTACTTCATCAAATTT	52	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,WYL,DinG,RT	NA,NA	NA|265aa|up_9|NZ_CP046716.1_913715_914510_+	PRK01827, thyA, thymidylate synthase; Reviewed	NA|188aa|up_8|NZ_CP046716.1_915155_915719_+	PRK10557, PRK10557, prepilin peptidase-dependent protein	NA|136aa|up_7|NZ_CP046716.1_915715_916123_+	PRK11521, PRK11521, DUF2509 family protein	NA|108aa|up_6|NZ_CP046716.1_916107_916431_+	PRK10332, PRK10332, prepilin-type N-terminal cleavage/methylation domain-containing protein	NA|1123aa|up_5|NZ_CP046716.1_916443_919812_+	PRK11069, recC, exodeoxyribonuclease V subunit gamma	NA|963aa|up_4|NZ_CP046716.1_919987_922876_+	PRK15101, PRK15101, protease3; Provisional	NA|1181aa|up_3|NZ_CP046716.1_922868_926411_+	PRK10876, recB, exonuclease V subunit beta; Provisional	NA|609aa|up_2|NZ_CP046716.1_926410_928237_+	PRK10875, recD, exodeoxyribonuclease V subunit alpha	NA|444aa|up_1|NZ_CP046716.1_928298_929630_-	PRK05279, PRK05279, N-acetylglutamate synthase; Validated	NA|418aa|up_0|NZ_CP046716.1_929861_931115_+	PRK10319, PRK10319, N-acetylmuramoyl-L-alanine amidase AmiA	NA|366aa|down_0|NZ_CP046716.1_931692_932790_+	PRK11162, mltA, murein transglycosylase A; Provisional	NA|269aa|down_1|NZ_CP046716.1_933028_933835_+	PRK15116, PRK15116, sulfur acceptor protein CsdL; Provisional	NA|148aa|down_2|NZ_CP046716.1_933885_934329_-	PRK15019, PRK15019, cysteine desulfurase sulfur acceptor subunit CsdE	NA|402aa|down_3|NZ_CP046716.1_934328_935534_-	PRK10874, PRK10874, cysteine desulfurase CsdA	NA|76aa|down_4|NZ_CP046716.1_935725_935953_+	NF033216, lipo_YgdI_YgdR, YgdI/YgdR family lipoprotein	NA|306aa|down_5|NZ_CP046716.1_936303_937221_+	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional	NA|132aa|down_6|NZ_CP046716.1_937239_937635_+	PRK10873, PRK10873, hypothetical protein; Provisional	NA|367aa|down_7|NZ_CP046716.1_937627_938728_+	PRK11760, PRK11760, putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional	NA|244aa|down_8|NZ_CP046716.1_938771_939503_-	PRK10411, PRK10411, L-fucose operon activator	NA|141aa|down_9|NZ_CP046716.1_939560_939983_-	PRK15420, fucU, L-fucose mutarotase; Provisional
GCF_011492985.1_ASM1149298v1	NZ_CP046716	Escherichia coli strain T16R chromosome, complete genome	2	974465-975817	1,2,1,2,3,2	PILER-CR,CRISPRCasFinder,CRT,CRT,CRISPRCasFinder,PILER-CR	no	cas3	c2c9_V-U4,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,WYL,DinG	Unclear	GTGTTCCCCGCGCCAGCGGGGATAAACC,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	28,29,29,29,29,29	0	0	NA	NA	I-E:I-E:I-E:I-E:I-E:I-E	21,20,21,21,20,21	21	Unclear	c2c9_V-U4,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,WYL,DinG,RT	NA,NA	NA|919aa|up_9|NZ_CP046716.1_961057_963814_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|434aa|up_8|NZ_CP046716.1_963870_965172_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_7|NZ_CP046716.1_965219_967454_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_6|NZ_CP046716.1_967531_967780_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_5|NZ_CP046716.1_967779_968115_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_4|NZ_CP046716.1_968185_968977_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_3|NZ_CP046716.1_969204_970842_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_2|NZ_CP046716.1_970929_972228_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_1|NZ_CP046716.1_972287_973160_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|224aa|up_0|NZ_CP046716.1_973453_974125_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|NZ_CP046716.1_976456_977935_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|NZ_CP046716.1_977961_979239_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|NZ_CP046716.1_979557_980343_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|NZ_CP046716.1_980412_981867_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|470aa|down_4|NZ_CP046716.1_981888_983298_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|NZ_CP046716.1_983275_984055_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|298aa|down_6|NZ_CP046716.1_984018_984912_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_7|NZ_CP046716.1_985059_985635_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_8|NZ_CP046716.1_985651_985912_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|122aa|down_9|NZ_CP046716.1_987251_987617_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)
GCF_011492985.1_ASM1149298v1	NZ_CP046716	Escherichia coli strain T16R chromosome, complete genome	3	1001367-1002737	3,4,3,4	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	c2c9_V-U4,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,WYL,DinG	Type I-E	GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG,TCGAGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29,31	0	0	NA	NA	I-E:I-E:I-E:I-E	17,22,22,17	22	TypeI-E	c2c9_V-U4,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,WYL,DinG,RT	NA,NA	NA|571aa|up_9|NZ_CP046716.1_989731_991444_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_8|NZ_CP046716.1_991517_992252_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	cas3|889aa|up_7|NZ_CP046716.1_992610_995277_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|451aa|up_6|NZ_CP046716.1_995691_997044_+	PRK09693, PRK09693, Cascade antiviral complex protein; Validated	cse2gr11|161aa|up_5|NZ_CP046716.1_997192_997675_+	cd09670, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|364aa|up_4|NZ_CP046716.1_997687_998779_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|225aa|up_3|NZ_CP046716.1_998781_999456_+	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas6e|200aa|up_2|NZ_CP046716.1_999442_1000042_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|306aa|up_1|NZ_CP046716.1_1000057_1000975_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|95aa|up_0|NZ_CP046716.1_1000976_1001261_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NZ_CP046716.1_1002757_1003795_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP046716.1_1004046_1004955_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP046716.1_1004956_1006384_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP046716.1_1006383_1006989_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP046716.1_1007038_1007362_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP046716.1_1007555_1007867_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP046716.1_1007885_1008596_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP046716.1_1008595_1009075_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP046716.1_1009071_1010121_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP046716.1_1010101_1010863_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_011492985.1_ASM1149298v1	NZ_CP046716	Escherichia coli strain T16R chromosome, complete genome	4	2129495-2129618	5	CRISPRCasFinder	no	DEDDh	c2c9_V-U4,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,WYL,DinG	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,WYL,DinG,RT	NA,NA|30aa|down_7|NZ_CP046716.1_2138514_2138604_+	NA|79aa|up_9|NZ_CP046716.1_2118402_2118639_-	PRK15396, PRK15396, major outer membrane lipoprotein	NA|471aa|up_8|NZ_CP046716.1_2118949_2120362_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_7|NZ_CP046716.1_2120918_2121128_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_6|NZ_CP046716.1_2121582_2122209_+	PRK09898, PRK09898, ferredoxin-like protein	NA|213aa|up_5|NZ_CP046716.1_2124344_2124983_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP046716.1_2125046_2125715_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP046716.1_2125711_2126497_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP046716.1_2126500_2127313_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP046716.1_2127324_2128929_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP046716.1_2129054_2129360_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP046716.1_2129932_2131189_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP046716.1_2131229_2132603_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP046716.1_2132817_2133459_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP046716.1_2133498_2134647_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP046716.1_2134937_2136149_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP046716.1_2136261_2137194_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP046716.1_2137190_2138216_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP046716.1_2138514_2138604_+	NA	NA|390aa|down_8|NZ_CP046716.1_2138769_2139939_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP046716.1_2140173_2140755_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_011492985.1_ASM1149298v1	NZ_CP046716	Escherichia coli strain T16R chromosome, complete genome	5	2816116-2816207	6	CRISPRCasFinder	no		c2c9_V-U4,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,WYL,DinG	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,WYL,DinG,RT	NA|70aa|up_8|NZ_CP046716.1_2805235_2805445_-,NA	NA|503aa|up_9|NZ_CP046716.1_2803568_2805077_-	PRK15419, PRK15419, sodium/proline symporter PutP	NA|70aa|up_8|NZ_CP046716.1_2805235_2805445_-	NA	NA|1321aa|up_7|NZ_CP046716.1_2805499_2809462_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_6|NZ_CP046716.1_2809501_2810140_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_5|NZ_CP046716.1_2810427_2811519_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_4|NZ_CP046716.1_2811518_2812211_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_3|NZ_CP046716.1_2812222_2812609_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_2|NZ_CP046716.1_2812616_2813417_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|165aa|up_1|NZ_CP046716.1_2813984_2814479_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP046716.1_2814499_2815828_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP046716.1_2816630_2817227_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP046716.1_2817247_2817475_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP046716.1_2817512_2818754_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|307aa|down_3|NZ_CP046716.1_2820562_2821483_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_4|NZ_CP046716.1_2821482_2821788_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_5|NZ_CP046716.1_2821939_2822539_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_6|NZ_CP046716.1_2822535_2825082_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_7|NZ_CP046716.1_2825081_2826254_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_8|NZ_CP046716.1_2826383_2827076_+	PRK10766, PRK10766, two-component system response regulator TorR	NA|343aa|down_9|NZ_CP046716.1_2827048_2828077_-	PRK10936, PRK10936, TMAO reductase system periplasmic protein TorT; Provisional
GCF_011492985.1_ASM1149298v1	NZ_CP046716	Escherichia coli strain T16R chromosome, complete genome	6	2991735-2991818	7	CRISPRCasFinder	no		c2c9_V-U4,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,WYL,DinG	Orphan	ATCTGCCTGTACGGCAGTGAACT	23	0	0	NA	NA	I-F	1	1	Orphan	c2c9_V-U4,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,WYL,DinG,RT	NA,NA	NA|431aa|up_9|NZ_CP046716.1_2976636_2977929_-	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|448aa|up_8|NZ_CP046716.1_2978019_2979363_-	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|204aa|up_7|NZ_CP046716.1_2979373_2979985_-	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|1343aa|up_6|NZ_CP046716.1_2980139_2984168_-	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|165aa|up_5|NZ_CP046716.1_2984302_2984797_-	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|322aa|up_4|NZ_CP046716.1_2985341_2986307_+	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|589aa|up_3|NZ_CP046716.1_2986429_2988196_+	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|574aa|up_2|NZ_CP046716.1_2988196_2989918_+	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|235aa|up_1|NZ_CP046716.1_2989959_2990664_+	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|73aa|up_0|NZ_CP046716.1_2990948_2991167_+	PRK00276, infA, translation initiation factor IF-1; Validated	NA|759aa|down_0|NZ_CP046716.1_2992030_2994307_-	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|107aa|down_1|NZ_CP046716.1_2994337_2994658_-	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|75aa|down_2|NZ_CP046716.1_2994980_2995205_+	PRK09937, PRK09937, cold shock-like protein CspD	NA|649aa|down_3|NZ_CP046716.1_2995277_2997224_-	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|372aa|down_4|NZ_CP046716.1_2997220_2998336_-	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|317aa|down_5|NZ_CP046716.1_2998492_2999443_+	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|553aa|down_6|NZ_CP046716.1_2999439_3001098_-	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|232aa|down_7|NZ_CP046716.1_3001523_3002219_+	PRK05420, PRK05420, aquaporin Z; Provisional	NA|300aa|down_8|NZ_CP046716.1_3002713_3003613_+	COG2431, COG2431, Predicted membrane protein [Function unknown]	NA|551aa|down_9|NZ_CP046716.1_3003756_3005409_+	PRK05290, PRK05290, hybrid cluster protein; Provisional
GCF_011492985.1_ASM1149298v1	NZ_CP046716	Escherichia coli strain T16R chromosome, complete genome	7	3113201-3113345	8	CRISPRCasFinder	no		c2c9_V-U4,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,WYL,DinG	Orphan	GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	52	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,WYL,DinG,RT	NA,NA	NA|330aa|up_9|NZ_CP046716.1_3101099_3102089_-	PRK00164, moaA, GTP 3',8-cyclase MoaA	NA|303aa|up_8|NZ_CP046716.1_3102485_3103394_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|674aa|up_7|NZ_CP046716.1_3103585_3105607_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|226aa|up_6|NZ_CP046716.1_3106185_3106863_-	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD	NA|252aa|up_5|NZ_CP046716.1_3106855_3107611_-	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional	NA|385aa|up_4|NZ_CP046716.1_3107597_3108752_-	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed	NA|347aa|up_3|NZ_CP046716.1_3108748_3109789_-	PRK15108, PRK15108, biotin synthase; Provisional	NA|430aa|up_2|NZ_CP046716.1_3109875_3111165_+	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated	NA|159aa|up_1|NZ_CP046716.1_3111223_3111700_+	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional	NA|428aa|up_0|NZ_CP046716.1_3111851_3113135_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|754aa|down_0|NZ_CP046716.1_3113368_3115630_-	PRK11413, PRK11413, putative hydratase; Provisional	NA|478aa|down_1|NZ_CP046716.1_3115812_3117246_-	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|351aa|down_2|NZ_CP046716.1_3117321_3118374_-	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|318aa|down_3|NZ_CP046716.1_3118557_3119511_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|332aa|down_4|NZ_CP046716.1_3119551_3120547_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|273aa|down_5|NZ_CP046716.1_3120701_3121520_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|353aa|down_6|NZ_CP046716.1_3121520_3122579_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|230aa|down_7|NZ_CP046716.1_3122581_3123271_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|258aa|down_8|NZ_CP046716.1_3123270_3124044_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|50aa|down_9|NZ_CP046716.1_3124210_3124360_-	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ
GCF_011492985.1_ASM1149298v1	NZ_CP046716	Escherichia coli strain T16R chromosome, complete genome	8	3346543-3346639	9	CRISPRCasFinder	no		c2c9_V-U4,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,WYL,DinG	Orphan	TTGTAGGCCTGATAAGATGCGTCAAGC	27	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,WYL,DinG,RT	NA,NA	NA|172aa|up_9|NZ_CP046716.1_3336585_3337101_-	PRK09934, PRK09934, fimbriae assembly protein	NA|347aa|up_8|NZ_CP046716.1_3337111_3338152_-	PRK15199, fimH, type 1 fimbrin D-mannose specific adhesin FimH	NA|289aa|up_7|NZ_CP046716.1_3340263_3341130_+	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|71aa|up_6|NZ_CP046716.1_3341131_3341344_+	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|174aa|up_5|NZ_CP046716.1_3341451_3341973_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|462aa|up_4|NZ_CP046716.1_3342008_3343394_-	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|165aa|up_3|NZ_CP046716.1_3343567_3344062_+	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|241aa|up_2|NZ_CP046716.1_3344064_3344787_+	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|170aa|up_1|NZ_CP046716.1_3344904_3345414_+	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|356aa|up_0|NZ_CP046716.1_3345410_3346478_+	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|298aa|down_0|NZ_CP046716.1_3346672_3347566_-	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|272aa|down_1|NZ_CP046716.1_3347562_3348378_-	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|420aa|down_2|NZ_CP046716.1_3348388_3349648_-	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|556aa|down_3|NZ_CP046716.1_3349657_3351325_-	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|350aa|down_4|NZ_CP046716.1_3351641_3352691_+	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|412aa|down_5|NZ_CP046716.1_3352712_3353948_+	TIGR03176, AllC, allantoate amidohydrolase	NA|262aa|down_6|NZ_CP046716.1_3353958_3354744_+	COG3257, GlxB, Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]	NA|382aa|down_7|NZ_CP046716.1_3354971_3356117_-	PRK09932, PRK09932, glycerate 3-kinase	NA|434aa|down_8|NZ_CP046716.1_3356138_3357440_-	PRK11412, PRK11412, uracil/xanthine transporter	NA|454aa|down_9|NZ_CP046716.1_3357496_3358858_-	PRK08044, PRK08044, allantoinase AllB
GCF_011492985.1_ASM1149298v1	NZ_CP046716	Escherichia coli strain T16R chromosome, complete genome	9	3487828-3487972	10	CRISPRCasFinder	no		c2c9_V-U4,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,WYL,DinG	Orphan	TTTTGCAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCAT	43	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,WYL,DinG,RT	NA,NA|28aa|down_2|NZ_CP046716.1_3490017_3490101_-	NA|357aa|up_9|NZ_CP046716.1_3472966_3474037_-	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional	NA|194aa|up_8|NZ_CP046716.1_3474129_3474711_+	PRK10045, PRK10045, ACP phosphodiesterase	NA|606aa|up_7|NZ_CP046716.1_3474715_3476533_-	PRK10785, PRK10785, maltodextrin glucosidase; Provisional	NA|458aa|up_6|NZ_CP046716.1_3476688_3478062_-	PRK10580, proY, putative proline-specific permease; Provisional	NA|440aa|up_5|NZ_CP046716.1_3478137_3479457_-	PRK15433, PRK15433, branched-chain amino acid transporter carrier protein BrnQ	NA|432aa|up_4|NZ_CP046716.1_3479863_3481159_-	PRK11006, phoR, phosphate regulon sensor histidine kinase PhoR	NA|230aa|up_3|NZ_CP046716.1_3481216_3481906_-	PRK10161, PRK10161, phosphate response regulator transcription factor PhoB	NA|401aa|up_2|NZ_CP046716.1_3482095_3483298_+	PRK10966, PRK10966, exonuclease subunit SbcD; Provisional	NA|1049aa|up_1|NZ_CP046716.1_3483294_3486441_+	PRK10246, PRK10246, exonuclease subunit SbcC; Provisional	NA|395aa|up_0|NZ_CP046716.1_3486566_3487751_+	PRK10091, PRK10091, MFS transport protein AraJ; Provisional	NA|303aa|down_0|NZ_CP046716.1_3487995_3488904_-	PRK09557, PRK09557, fructokinase; Reviewed	NA|304aa|down_1|NZ_CP046716.1_3489028_3489940_+	COG2974, RdgC, DNA recombination-dependent growth factor C [DNA replication, recombination, and repair]	NA|28aa|down_2|NZ_CP046716.1_3490017_3490101_-	NA	NA|95aa|down_3|NZ_CP046716.1_3490586_3490871_-	PRK10579, PRK10579, pyrimidine/purine nucleoside phosphorylase	NA|226aa|down_4|NZ_CP046716.1_3490942_3491620_-	PRK10481, PRK10481, hypothetical protein; Provisional	NA|64aa|down_5|NZ_CP046716.1_3491877_3492069_-	PRK10380, PRK10380, hypothetical protein; Provisional	NA|175aa|down_6|NZ_CP046716.1_3492118_3492643_-	PRK03731, aroL, shikimate kinase AroL	NA|155aa|down_7|NZ_CP046716.1_3492819_3493284_-	PRK00124, PRK00124, YaiI/YqxD family protein	NA|270aa|down_8|NZ_CP046716.1_3493403_3494213_+	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed	NA|372aa|down_9|NZ_CP046716.1_3494229_3495345_-	PRK10245, adrA, diguanylate cyclase AdrA; Provisional
GCF_011492985.1_ASM1149298v1	NZ_CP046717	Escherichia coli strain T16R plasmid pT16R-1, complete sequence	1	157678-157835	1	PILER-CR	no			Orphan	CCGTACCCGGTATAGTGGAT	20	0	0	NA	NA	NA	2	2	Orphan	c2c9_V-U4,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,WYL,DinG,RT	NA|259aa|up_9|NZ_CP046717.1_148786_149563_+,NA|114aa|up_8|NZ_CP046717.1_149751_150093_+,NA|88aa|up_7|NZ_CP046717.1_150193_150457_+,NA|235aa|up_6|NZ_CP046717.1_150684_151389_+,NA|140aa|up_5|NZ_CP046717.1_151421_151841_-,NA|172aa|down_0|NZ_CP046717.1_158024_158540_-,NA|59aa|down_2|NZ_CP046717.1_162092_162269_-,NA|386aa|down_4|NZ_CP046717.1_164223_165381_-,NA|274aa|down_6|NZ_CP046717.1_166579_167401_-,NA|268aa|down_7|NZ_CP046717.1_169017_169821_-,NA|67aa|down_9|NZ_CP046717.1_172492_172693_-	NA|259aa|up_9|NZ_CP046717.1_148786_149563_+	NA	NA|114aa|up_8|NZ_CP046717.1_149751_150093_+	NA	NA|88aa|up_7|NZ_CP046717.1_150193_150457_+	NA	NA|235aa|up_6|NZ_CP046717.1_150684_151389_+	NA	NA|140aa|up_5|NZ_CP046717.1_151421_151841_-	NA	NA|795aa|up_4|NZ_CP046717.1_151928_154313_-	pfam13750, Big_3_3, Bacterial Ig-like domain (group 3)	NA|201aa|up_3|NZ_CP046717.1_154563_155166_+	pfam13752, DUF4165, Domain of unknown function (DUF4165)	NA|79aa|up_2|NZ_CP046717.1_155177_155414_+	pfam12245, Big_3_2, Bacterial Ig-like domain (group 3)	NA|199aa|up_1|NZ_CP046717.1_155569_156166_+	pfam13750, Big_3_3, Bacterial Ig-like domain (group 3)	NA|294aa|up_0|NZ_CP046717.1_156557_157439_+	pfam16441, DUF5038, Domain of unknown function (DUF5038)	NA|172aa|down_0|NZ_CP046717.1_158024_158540_-	NA	NA|819aa|down_1|NZ_CP046717.1_159190_161647_-	pfam13750, Big_3_3, Bacterial Ig-like domain (group 3)	NA|59aa|down_2|NZ_CP046717.1_162092_162269_-	NA	NA|559aa|down_3|NZ_CP046717.1_162283_163960_-	pfam13708, DUF4942, Domain of unknown function (DUF4942)	NA|386aa|down_4|NZ_CP046717.1_164223_165381_-	NA	NA|275aa|down_5|NZ_CP046717.1_165740_166565_+	TIGR00571, DNA_adenine_methylase, DNA adenine methylase (dam)	NA|274aa|down_6|NZ_CP046717.1_166579_167401_-	NA	NA|268aa|down_7|NZ_CP046717.1_169017_169821_-	NA	NA|105aa|down_8|NZ_CP046717.1_171511_171826_+	pfam12840, HTH_20, Helix-turn-helix domain	NA|67aa|down_9|NZ_CP046717.1_172492_172693_-	NA
