assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_011492925.1_ASM1149292v1	NZ_CP049979	Escherichia coli strain IBS28 chromosome, complete genome	1	1054614-1054731	1	CRISPRCasFinder	no		cas3,csa3,PD-DExK,DEDDh,DinG,c2c9_V-U4,RT,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Orphan	TGCCGGATGCGATGCTGGCGCACCTTATCCGGCCTACGGG	40	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,DEDDh,DinG,c2c9_V-U4,RT,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA|55aa|down_0|NZ_CP049979.1_1054804_1054969_-	NA|115aa|up_9|NZ_CP049979.1_1042335_1042680_-	PRK11424, PRK11424, DNA-binding transcriptional activator TdcR; Provisional	NA|313aa|up_8|NZ_CP049979.1_1042868_1043807_+	PRK10341, PRK10341, transcriptional regulator TdcA	NA|330aa|up_7|NZ_CP049979.1_1043905_1044895_+	PRK08638, PRK08638, bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB	NA|444aa|up_6|NZ_CP049979.1_1044916_1046248_+	PRK13629, PRK13629, threonine/serine transporter TdcC; Provisional	NA|403aa|up_5|NZ_CP049979.1_1046273_1047482_+	PRK12379, PRK12379, propionate kinase	NA|765aa|up_4|NZ_CP049979.1_1047515_1049810_+	cd01678, PFL1, Pyruvate formate lyase 1	NA|130aa|up_3|NZ_CP049979.1_1049823_1050213_+	PRK11401, PRK11401, enamine/imine deaminase	NA|455aa|up_2|NZ_CP049979.1_1050284_1051649_+	PRK15040, PRK15040, L-serine ammonia-lyase	NA|444aa|up_1|NZ_CP049979.1_1051923_1053255_+	TIGR00814, membrane_transport_protein_YhjV, serine transporter	NA|437aa|up_0|NZ_CP049979.1_1053282_1054593_+	COG3681, COG3681, L-cysteine desulfidase [Amino acid transport and metabolism]	NA|55aa|down_0|NZ_CP049979.1_1054804_1054969_-	NA	NA|234aa|down_1|NZ_CP049979.1_1054991_1055693_-	COG1741, COG1741, Pirin-related protein [General function prediction only]	NA|299aa|down_2|NZ_CP049979.1_1055797_1056694_+	cd08431, PBP2_HupR, The C-terminal substrate binding domain of LysR-type transcriptional regulator, HupR, which regulates expression of the heme uptake receptor HupA; contains the type 2 periplasmic binding fold	NA|119aa|down_3|NZ_CP049979.1_1056744_1057101_-	COG3152, COG3152, Predicted membrane protein [Function unknown]	NA|122aa|down_4|NZ_CP049979.1_1057342_1057708_-	COG3152, COG3152, Predicted membrane protein [Function unknown]	NA|329aa|down_5|NZ_CP049979.1_1058000_1058987_-	COG0435, ECM4, Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]	NA|161aa|down_6|NZ_CP049979.1_1059056_1059539_-	COG2259, COG2259, Predicted membrane protein [Function unknown]	NA|100aa|down_7|NZ_CP049979.1_1059634_1059934_-	pfam13997, YqjK, YqjK-like protein	NA|135aa|down_8|NZ_CP049979.1_1059923_1060328_-	COG5393, COG5393, Predicted membrane protein [Function unknown]	NA|102aa|down_9|NZ_CP049979.1_1060330_1060636_-	COG4575, ElaB, Uncharacterized conserved protein [Function unknown]
GCF_011492925.1_ASM1149292v1	NZ_CP049979	Escherichia coli strain IBS28 chromosome, complete genome	2	2693218-2693309	2	CRISPRCasFinder	no		cas3,csa3,PD-DExK,DEDDh,DinG,c2c9_V-U4,RT,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Orphan	GCATCAGAAGCAGGTAAAAAAGGTGG	26	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,DEDDh,DinG,c2c9_V-U4,RT,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA|70aa|down_9|NZ_CP049979.1_2703848_2704058_+	NA|231aa|up_9|NZ_CP049979.1_2682408_2683101_-	PRK10766, PRK10766, two-component system response regulator TorR	NA|391aa|up_8|NZ_CP049979.1_2683230_2684403_+	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|849aa|up_7|NZ_CP049979.1_2684402_2686949_+	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|200aa|up_6|NZ_CP049979.1_2686945_2687545_+	PRK04976, torD, chaperone protein TorD; Validated	NA|102aa|up_5|NZ_CP049979.1_2687637_2687943_-	PRK10265, PRK10265, chaperone modulator CbpM	NA|307aa|up_4|NZ_CP049979.1_2687942_2688863_-	PRK10266, PRK10266, curved DNA-binding protein	NA|420aa|up_3|NZ_CP049979.1_2689122_2690382_+	PRK09784, PRK09784, YccE family protein	NA|414aa|up_2|NZ_CP049979.1_2690670_2691912_+	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|76aa|up_1|NZ_CP049979.1_2691949_2692177_-	PRK10174, PRK10174, hypothetical protein; Provisional	NA|199aa|up_0|NZ_CP049979.1_2692197_2692794_-	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|443aa|down_0|NZ_CP049979.1_2693422_2694751_-	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|165aa|down_1|NZ_CP049979.1_2694771_2695266_-	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|197aa|down_2|NZ_CP049979.1_2695276_2695867_-	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|267aa|down_3|NZ_CP049979.1_2695876_2696677_-	TIGR03611, RutD, pyrimidine utilization protein D	NA|129aa|down_4|NZ_CP049979.1_2696684_2697071_-	TIGR03610, RutC, pyrimidine utilization protein C	NA|231aa|down_5|NZ_CP049979.1_2697082_2697775_-	TIGR03614, RutB, pyrimidine utilization protein B	NA|364aa|down_6|NZ_CP049979.1_2697774_2698866_-	TIGR03612, RutA, pyrimidine utilization protein A	NA|213aa|down_7|NZ_CP049979.1_2699153_2699792_+	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|1321aa|down_8|NZ_CP049979.1_2699831_2703794_-	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|70aa|down_9|NZ_CP049979.1_2703848_2704058_+	NA
GCF_011492925.1_ASM1149292v1	NZ_CP049979	Escherichia coli strain IBS28 chromosome, complete genome	3	4503318-4504018	1,3,1	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	cas3,csa3,PD-DExK,DEDDh,DinG,c2c9_V-U4,RT,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	11,11,11	11	TypeI-E	cas3,csa3,PD-DExK,DEDDh,DinG,c2c9_V-U4,RT,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA	NA|254aa|up_9|NZ_CP049979.1_4495129_4495891_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP049979.1_4495871_4496921_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP049979.1_4496917_4497397_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP049979.1_4497396_4498107_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP049979.1_4498125_4498437_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP049979.1_4498630_4498954_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP049979.1_4499003_4499609_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|NZ_CP049979.1_4499608_4501036_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP049979.1_4501037_4501946_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NZ_CP049979.1_4502197_4503235_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NZ_CP049979.1_4504114_4504408_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|308aa|down_1|NZ_CP049979.1_4504404_4505328_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|NZ_CP049979.1_4505324_4505975_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|NZ_CP049979.1_4505956_4506703_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|352aa|down_4|NZ_CP049979.1_4506713_4507769_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|179aa|down_5|NZ_CP049979.1_4507783_4508320_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|521aa|down_6|NZ_CP049979.1_4508316_4509879_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|900aa|down_7|NZ_CP049979.1_4509976_4512676_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|51aa|down_8|NZ_CP049979.1_4512869_4513022_-	pfam01848, HOK_GEF, Hok/gef family	NA|245aa|down_9|NZ_CP049979.1_4513286_4514021_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase
GCF_011492925.1_ASM1149292v1	NZ_CP049979	Escherichia coli strain IBS28 chromosome, complete genome	4	4519520-4520219	4,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	cas3,csa3,PD-DExK,DEDDh,DinG,c2c9_V-U4,RT,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	11,11,10	11	TypeI-E	cas3,csa3,PD-DExK,DEDDh,DinG,c2c9_V-U4,RT,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA|121aa|down_3|NZ_CP049979.1_4522959_4523322_+	cas7|352aa|up_9|NZ_CP049979.1_4506713_4507769_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|179aa|up_8|NZ_CP049979.1_4507783_4508320_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|521aa|up_7|NZ_CP049979.1_4508316_4509879_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|900aa|up_6|NZ_CP049979.1_4509976_4512676_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|51aa|up_5|NZ_CP049979.1_4512869_4513022_-	pfam01848, HOK_GEF, Hok/gef family	NA|245aa|up_4|NZ_CP049979.1_4513286_4514021_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|up_3|NZ_CP049979.1_4514094_4515807_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|600aa|up_2|NZ_CP049979.1_4515806_4517606_-	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|122aa|up_1|NZ_CP049979.1_4517921_4518287_+	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|185aa|up_0|NZ_CP049979.1_4518326_4518881_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|NZ_CP049979.1_4520558_4521230_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|201aa|down_1|NZ_CP049979.1_4521402_4522005_+	COG1704, LemA, Uncharacterized conserved protein [Function unknown]	NA|302aa|down_2|NZ_CP049979.1_4522018_4522924_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|121aa|down_3|NZ_CP049979.1_4522959_4523322_+	NA	NA|433aa|down_4|NZ_CP049979.1_4523377_4524676_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_5|NZ_CP049979.1_4524763_4526401_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_6|NZ_CP049979.1_4526628_4527420_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_7|NZ_CP049979.1_4527490_4527826_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_8|NZ_CP049979.1_4527825_4528074_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|745aa|down_9|NZ_CP049979.1_4528151_4530386_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
