assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_011466875.1_ASM1146687v1	NZ_CP046028	Staphylococcus chromogenes strain 1401 chromosome, complete genome	1	87847-88128	1	CRT	no		cas9,cas1,cas2,csa3,WYL,DEDDh,cas3,DinG	Orphan	TCGGCTCAGGTGTNGGTT	18	0	0	NA	NA	NA	6	6	Orphan	cas9,cas1,cas2,csa3,WYL,DEDDh,cas3,DinG,Cas14u_CAS-V,casR	NA,NA|166aa|down_8|NZ_CP046028.1_105084_105582_+	NA|132aa|up_9|NZ_CP046028.1_75755_76151_+	COG2893, ManX, Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism]	NA|384aa|up_8|NZ_CP046028.1_76180_77332_+	cd00854, NagA, N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate	NA|298aa|up_7|NZ_CP046028.1_77629_78523_+	TIGR01533, Lipoprotein_E, 5'-nucleotidase, lipoprotein e(P4) family	NA|308aa|up_6|NZ_CP046028.1_78688_79612_+	cd05290, LDH_3, A subgroup of L-lactate dehydrogenases	NA|621aa|up_5|NZ_CP046028.1_79867_81730_+	PRK09263, PRK09263, anaerobic ribonucleoside triphosphate reductase; Provisional	NA|178aa|up_4|NZ_CP046028.1_81716_82250_+	pfam13353, Fer4_12, 4Fe-4S single cluster domain	NA|448aa|up_3|NZ_CP046028.1_82492_83836_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|320aa|up_2|NZ_CP046028.1_83915_84875_+	pfam04909, Amidohydro_2, Amidohydrolase	NA|513aa|up_1|NZ_CP046028.1_85008_86547_-	TIGR01168, M_protein_serotype, Gram-positive signal peptide, YSIRK family	NA|234aa|up_0|NZ_CP046028.1_86566_87268_-	PRK13036, PRK13036, superantigen-like protein; Reviewed	NA|583aa|down_0|NZ_CP046028.1_91141_92890_+	PRK11281, PRK11281, mechanosensitive channel MscK	NA|677aa|down_1|NZ_CP046028.1_92942_94973_-	PRK08581, PRK08581, amidase domain-containing protein	NA|943aa|down_2|NZ_CP046028.1_95183_98012_+	COG1511, COG1511, Predicted membrane protein [Function unknown]	NA|195aa|down_3|NZ_CP046028.1_98078_98663_-	TIGR02366, conserved_hypothetical_protein, probable dihydroxyacetone kinase regulator	NA|592aa|down_4|NZ_CP046028.1_98827_100603_+	PRK13977, PRK13977, myosin-cross-reactive antigen; Provisional	NA|544aa|down_5|NZ_CP046028.1_100708_102340_-	pfam02216, B, B domain	NA|277aa|down_6|NZ_CP046028.1_103095_103926_+	pfam02517, Abi, CAAX protease self-immunity	NA|296aa|down_7|NZ_CP046028.1_103975_104863_+	pfam06028, DUF915, Alpha/beta hydrolase of unknown function (DUF915)	NA|166aa|down_8|NZ_CP046028.1_105084_105582_+	NA	NA|480aa|down_9|NZ_CP046028.1_105683_107123_-	PRK09589, celA, 6-phospho-beta-glucosidase; Reviewed
GCF_011466875.1_ASM1146687v1	NZ_CP046028	Staphylococcus chromogenes strain 1401 chromosome, complete genome	2	159299-159731	1,1,2	PILER-CR,CRISPRCasFinder,CRT	no	cas9,cas1,cas2	cas9,cas1,cas2,csa3,WYL,DEDDh,cas3,DinG	Type II-B,Type II-C, or Type II-C?,Type II-A, Type II-B	GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC,GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC,GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC	36,36,36	0	0	NA	NA	NA:NA:NA	5,6,6	6	TypeII-B,TypeII-C,orTypeII-C?,TypeII-A,TypeII-B	cas9,cas1,cas2,csa3,WYL,DEDDh,cas3,DinG,Cas14u_CAS-V,casR	NA|250aa|up_7|NZ_CP046028.1_150802_151552_+,NA|107aa|up_3|NZ_CP046028.1_154159_154480_-,NA|335aa|down_3|NZ_CP046028.1_164336_165341_+	NA|223aa|up_9|NZ_CP046028.1_149143_149812_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|303aa|up_8|NZ_CP046028.1_149894_150803_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|250aa|up_7|NZ_CP046028.1_150802_151552_+	NA	NA|301aa|up_6|NZ_CP046028.1_151574_152477_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|145aa|up_5|NZ_CP046028.1_152537_152972_-	COG2764, PhnB, Uncharacterized protein conserved in bacteria [Function unknown]	NA|209aa|up_4|NZ_CP046028.1_153297_153924_-	PRK00170, PRK00170, azoreductase; Reviewed	NA|107aa|up_3|NZ_CP046028.1_154159_154480_-	NA	NA|528aa|up_2|NZ_CP046028.1_155367_156951_+	cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM)	NA|214aa|up_1|NZ_CP046028.1_157907_158549_+	cd01012, YcaC_related, YcaC related amidohydrolases; E	NA|141aa|up_0|NZ_CP046028.1_158636_159059_-	cd06471, ACD_LpsHSP_like, Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18	cas9|1056aa|down_0|NZ_CP046028.1_159940_163108_+	cd09643, Csn1, CRISPR/Cas system-associated protein Cas9	cas1|301aa|down_1|NZ_CP046028.1_163107_164010_+	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas2|103aa|down_2|NZ_CP046028.1_164014_164323_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	NA|335aa|down_3|NZ_CP046028.1_164336_165341_+	NA	NA|441aa|down_4|NZ_CP046028.1_165617_166940_-	PRK00701, PRK00701, divalent metal cation transporter MntH	NA|231aa|down_5|NZ_CP046028.1_167191_167884_+	COG0132, BioD, Dethiobiotin synthetase [Coenzyme metabolism]	NA|450aa|down_6|NZ_CP046028.1_167858_169208_+	TIGR00508, hypothetical_protein_DESPIG_00326, adenosylmethionine-8-amino-7-oxononanoate transaminase	NA|371aa|down_7|NZ_CP046028.1_169209_170322_+	COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]	NA|227aa|down_8|NZ_CP046028.1_170314_170995_+	PRK01322, PRK01322, 6-carboxyhexanoate--CoA ligase; Provisional	NA|531aa|down_9|NZ_CP046028.1_171041_172634_-	COG1620, LldP, L-lactate permease [Energy production and conversion]
GCF_011466875.1_ASM1146687v1	NZ_CP046028	Staphylococcus chromogenes strain 1401 chromosome, complete genome	3	962427-962534	2	CRISPRCasFinder	no		cas9,cas1,cas2,csa3,WYL,DEDDh,cas3,DinG	Orphan	GTGGGTTCGATTCCCATCAGCCGC	24	0	0	NA	NA	NA	1	1	Orphan	cas9,cas1,cas2,csa3,WYL,DEDDh,cas3,DinG,Cas14u_CAS-V,casR	NA,NA|64aa|down_2|NZ_CP046028.1_965073_965265_-,NA|81aa|down_5|NZ_CP046028.1_966953_967196_+,NA|167aa|down_6|NZ_CP046028.1_967152_967653_-,NA|196aa|down_8|NZ_CP046028.1_968598_969186_+,NA|105aa|down_9|NZ_CP046028.1_969196_969511_+	NA|177aa|up_9|NZ_CP046028.1_952939_953470_-	PRK13777, PRK13777, HTH-type transcriptional regulator Hpr	NA|119aa|up_8|NZ_CP046028.1_953569_953926_-	COG4980, GvpP, Gas vesicle protein [General function prediction only]	NA|142aa|up_7|NZ_CP046028.1_954010_954436_-	COG0537, Hit, Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only]	NA|246aa|up_6|NZ_CP046028.1_954564_955302_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|405aa|up_5|NZ_CP046028.1_955298_956513_+	pfam05975, EcsB, Bacterial ABC transporter protein EcsB	NA|179aa|up_4|NZ_CP046028.1_956769_957306_-	COG2329, COG2329, Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides [General function prediction only]	NA|348aa|up_3|NZ_CP046028.1_957502_958546_+	PRK00115, hemE, uroporphyrinogen decarboxylase; Validated	NA|311aa|up_2|NZ_CP046028.1_958567_959500_+	PRK12435, PRK12435, ferrochelatase; Provisional	NA|466aa|up_1|NZ_CP046028.1_959505_960903_+	PRK11883, PRK11883, protoporphyrinogen oxidase; Reviewed	NA|185aa|up_0|NZ_CP046028.1_961227_961782_+	COG3545, COG3545, Predicted esterase of the alpha/beta hydrolase fold [General function prediction only]	NA|344aa|down_0|NZ_CP046028.1_963027_964059_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|239aa|down_1|NZ_CP046028.1_964252_964969_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|64aa|down_2|NZ_CP046028.1_965073_965265_-	NA	NA|235aa|down_3|NZ_CP046028.1_965829_966534_-	cd06529, S24_LexA-like, Peptidase S24 LexA-like proteins are involved in the SOS response leading to the repair of single-stranded DNA within the bacterial cell	NA|81aa|down_4|NZ_CP046028.1_966697_966940_+	pfam05339, DUF739, Protein of unknown function (DUF739)	NA|81aa|down_5|NZ_CP046028.1_966953_967196_+	NA	NA|167aa|down_6|NZ_CP046028.1_967152_967653_-	NA	NA|296aa|down_7|NZ_CP046028.1_967708_968596_+	pfam11300, DUF3102, Protein of unknown function (DUF3102)	NA|196aa|down_8|NZ_CP046028.1_968598_969186_+	NA	NA|105aa|down_9|NZ_CP046028.1_969196_969511_+	NA
