The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP046028	Staphylococcus chromogenes strain 1401 chromosome, complete genome	2350748	963027	1047919	2350748	capsid,portal,protease,head,tRNA,transposase,terminase,tail,integrase	Staphylococcus_phage(58.44%)	105	956715:956736	1034172:1034193
956715:956736	attL	GGTAAATTTTGATGGCTATTTT	NA	NA	NA	NA
WP_165885599.1|963027_964059_-|integrase	site-specific integrase	integrase	U3PJ31	Staphylococcus_phage	70.0	4.2e-137
WP_060551362.1|964252_964969_-	type II toxin-antitoxin system PemK/MazF family toxin	NA	H9A0K1	Staphylococcus_phage	64.4	3.8e-76
WP_060551361.1|965073_965265_-	hypothetical protein	NA	NA	NA	NA	NA
WP_165885600.1|965829_966534_-	helix-turn-helix domain-containing protein	NA	A0A2I6PDG6	Staphylococcus_phage	68.5	3.5e-82
WP_165885601.1|966697_966940_+	DUF739 family protein	NA	Q9G038	Staphylococcus_virus	91.2	1.1e-35
WP_165885602.1|966953_967196_+	hypothetical protein	NA	NA	NA	NA	NA
WP_165885603.1|967152_967653_-	hypothetical protein	NA	NA	NA	NA	NA
WP_165885604.1|967708_968596_+	DUF3102 domain-containing protein	NA	A0A2H4JAH5	uncultured_Caudovirales_phage	64.2	1.6e-36
WP_165885605.1|968598_969186_+	hypothetical protein	NA	NA	NA	NA	NA
WP_060551356.1|969196_969511_+	hypothetical protein	NA	S4V9P0	Staphylococcus_phage	38.6	4.0e-14
WP_060551355.1|969552_969786_+	hypothetical protein	NA	A0A2H4JBS5	uncultured_Caudovirales_phage	50.0	2.1e-12
WP_060551354.1|969771_970107_-	hypothetical protein	NA	M9NS98	Staphylococcus_phage	40.7	2.3e-15
WP_060551353.1|970155_970398_+	hypothetical protein	NA	A0A2H4J7P2	uncultured_Caudovirales_phage	77.9	1.6e-23
WP_060552492.1|970522_970720_+	hypothetical protein	NA	A0A1J0MFJ7	Staphylococcus_phage	45.3	1.2e-05
WP_165885606.1|970732_971059_+	DUF771 domain-containing protein	NA	Q4ZC28	Staphylococcus_virus	34.3	5.3e-09
WP_165885607.1|971308_971575_+	DUF1108 family protein	NA	A0A1J0MFD3	Staphylococcus_phage	33.3	8.9e-07
WP_165885608.1|971574_972111_+	hypothetical protein	NA	A0A0H3U480	Staphylococcus_phage	67.8	1.4e-59
WP_165885609.1|972111_972753_+	single-stranded DNA-binding protein	NA	A0A1J0MF78	Staphylococcus_phage	63.0	1.0e-72
WP_165885610.1|972752_973172_+	single-stranded DNA-binding protein	NA	A0A1J0MFD7	Staphylococcus_phage	86.5	1.0e-49
WP_165885611.1|973183_973858_+	hypothetical protein	NA	A0A1J0MFX6	Staphylococcus_phage	87.8	1.6e-113
WP_165885304.1|973854_974058_+	hypothetical protein	NA	NA	NA	NA	NA
WP_165885612.1|974096_974885_+	DnaD domain protein	NA	A0A223LFI6	Staphylococcus_phage	79.6	1.4e-76
WP_165885613.1|974881_975223_+	hypothetical protein	NA	Q4ZC18	Staphylococcus_virus	72.6	1.1e-41
WP_165885614.1|975215_976454_+	AAA family ATPase	NA	Q4ZC17	Staphylococcus_virus	97.8	8.2e-228
WP_165885615.1|976655_977078_+	RusA family crossover junction endodeoxyribonuclease	NA	Q4ZC15	Staphylococcus_virus	92.9	5.7e-72
WP_165885616.1|977079_977499_+	hypothetical protein	NA	Q4ZC14	Staphylococcus_virus	41.6	5.9e-21
WP_165885617.1|977495_977687_+	hypothetical protein	NA	Q4ZC13	Staphylococcus_virus	71.9	1.9e-19
WP_165885962.1|977760_977985_+	DUF3310 domain-containing protein	NA	Q4ZC12	Staphylococcus_virus	93.2	7.2e-34
WP_165885618.1|977984_978197_+	hypothetical protein	NA	Q4ZC11	Staphylococcus_virus	71.4	4.6e-22
WP_060550729.1|978208_978613_+	hypothetical protein	NA	A0A0U1ZWJ6	Staphylococcus_phage	36.7	3.5e-10
WP_165885305.1|978609_978954_+	hypothetical protein	NA	A0A2H4J207	uncultured_Caudovirales_phage	57.4	1.1e-25
WP_165885619.1|979007_979169_+	hypothetical protein	NA	Q4ZC05	Staphylococcus_virus	90.6	1.5e-20
WP_165885620.1|979180_979699_+	dUTPase	NA	A0A2H4JA54	uncultured_Caudovirales_phage	84.8	7.2e-77
WP_165885621.1|979890_980100_+	hypothetical protein	NA	NA	NA	NA	NA
WP_060551333.1|980378_980894_+	hypothetical protein	NA	NA	NA	NA	NA
WP_165885622.1|980957_981176_+	hypothetical protein	NA	A0A2H4J460	uncultured_Caudovirales_phage	72.2	2.5e-23
WP_165885623.1|981193_981589_+	hypothetical protein	NA	A0A2H4J610	uncultured_Caudovirales_phage	85.5	3.0e-59
WP_165885624.1|981805_981991_+	type II toxin-antitoxin system HicA family toxin	NA	A0A0D4DC32	Acinetobacter_phage	75.4	7.1e-19
WP_060551331.1|982025_982421_+	antitoxin HicB	NA	M1PG28	Streptococcus_phage	44.0	7.5e-26
WP_060552489.1|982903_983203_+	HNH endonuclease	NA	A0A1W6JQ75	Staphylococcus_phage	70.0	4.8e-33
WP_060551330.1|983339_983723_+	hypothetical protein	NA	A0A1X9H0I2	Staphylococcus_phage	65.5	4.1e-29
WP_165885625.1|983709_985377_+|terminase	terminase large subunit	terminase	A0A059T7Q8	Listeria_phage	60.4	1.4e-198
WP_060551328.1|985396_986575_+|portal	phage portal protein	portal	A8AT96	Listeria_phage	49.6	8.6e-102
WP_060552488.1|986537_987251_+|protease	Clp protease ClpP	protease	A0A2H4J8Y7	uncultured_Caudovirales_phage	53.5	1.2e-50
WP_060551327.1|987262_988462_+|capsid	phage major capsid protein	capsid	A0A2H4JHT8	uncultured_Caudovirales_phage	47.3	5.5e-88
WP_060551326.1|988479_988767_+|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A2H4JAA9	uncultured_Caudovirales_phage	57.8	3.4e-20
WP_060551325.1|988750_989119_+	hypothetical protein	NA	NA	NA	NA	NA
WP_060551324.1|989108_989498_+	hypothetical protein	NA	A0A2H4J7V9	uncultured_Caudovirales_phage	56.8	9.6e-34
WP_060552487.1|989518_989914_+	hypothetical protein	NA	A0A2H4JBV0	uncultured_Caudovirales_phage	43.3	1.5e-21
WP_060551323.1|989926_990550_+|tail	phage tail protein	tail	A0A2H4JDS5	uncultured_Caudovirales_phage	62.9	1.6e-70
WP_165885963.1|990561_990747_+	hypothetical protein	NA	A0A0N9STM6	Staphylococcus_phage	55.7	2.4e-11
WP_060551322.1|990814_991186_+	hypothetical protein	NA	A0A2H4JH57	uncultured_Caudovirales_phage	62.6	1.5e-36
WP_165885626.1|991245_991389_+	hypothetical protein	NA	A0A2H4JAE7	uncultured_Caudovirales_phage	68.2	1.0e-09
WP_165885627.1|991405_996211_+|tail	phage tail tape measure protein	tail	A0A1J0MFP9	Staphylococcus_phage	59.1	1.0e-281
WP_165885628.1|996207_997695_+|tail	phage tail protein	tail	Q4ZD64	Staphylococcus_phage	41.9	1.1e-109
WP_165885629.1|997696_1001179_+	hypothetical protein	NA	A0A1Q1PW30	Staphylococcus_phage	35.9	1.4e-163
WP_156407408.1|1001188_1001338_+	hypothetical protein	NA	NA	NA	NA	NA
WP_060551318.1|1001380_1001695_+	hypothetical protein	NA	NA	NA	NA	NA
WP_060551317.1|1001743_1002088_+	hypothetical protein	NA	NA	NA	NA	NA
WP_060551316.1|1002227_1002476_+	hypothetical protein	NA	Q4ZD59	Staphylococcus_phage	92.7	2.0e-37
WP_165885630.1|1002477_1003947_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A1J0MFY3	Staphylococcus_phage	81.0	9.4e-231
WP_060551314.1|1004528_1005266_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_060551313.1|1005556_1005781_+	hypothetical protein	NA	NA	NA	NA	NA
WP_060551312.1|1005770_1006214_+	DUF2335 domain-containing protein	NA	NA	NA	NA	NA
WP_037574540.1|1008840_1009026_+	hypothetical protein	NA	NA	NA	NA	NA
WP_145400712.1|1009888_1010743_+|protease	PrsW family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_037574536.1|1011255_1012002_-	SDR family oxidoreductase	NA	Q06VL0	Trichoplusia_ni_ascovirus	29.8	7.6e-19
WP_103158796.1|1012314_1012866_+	alkaline shock response membrane anchor protein AmaP	NA	NA	NA	NA	NA
WP_037574531.1|1012886_1013129_+	DUF2273 domain-containing protein	NA	NA	NA	NA	NA
WP_145400714.1|1013176_1013671_+	Asp23/Gls24 family envelope stress response protein	NA	NA	NA	NA	NA
WP_165885631.1|1013920_1015330_+	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	49.9	1.2e-129
WP_165885632.1|1015326_1016316_+	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	43.8	1.2e-75
WP_037574520.1|1016312_1016543_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	78.1	8.5e-30
WP_037574517.1|1016605_1017070_+	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	51.6	2.6e-38
WP_151365244.1|1017080_1017842_+	prolyl oligopeptidase family serine peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	61.9	3.9e-87
WP_165885633.1|1017877_1019458_-	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	75.8	1.3e-241
WP_165885634.1|1019890_1021090_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	80.6	9.8e-178
WP_165885635.1|1021179_1022088_+	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	66.9	1.5e-90
WP_165885636.1|1022336_1023173_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	69.3	1.0e-112
WP_037574506.1|1023304_1023679_-	CrcB family protein	NA	NA	NA	NA	NA
WP_165885637.1|1023675_1024041_-	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	43.8	3.1e-18
WP_165885638.1|1024058_1024361_-	hypothetical protein	NA	NA	NA	NA	NA
WP_165885639.1|1024510_1025221_+	transaldolase	NA	M1PR54	Cyanophage	37.0	1.2e-21
WP_165885640.1|1025321_1025774_+	hypothetical protein	NA	NA	NA	NA	NA
WP_165885641.1|1025753_1026182_-	hypothetical protein	NA	NA	NA	NA	NA
WP_145400721.1|1026199_1026667_-	sigma-70 family RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	44.0	5.6e-20
WP_037574491.1|1026862_1027087_+	hypothetical protein	NA	NA	NA	NA	NA
WP_037574490.1|1027249_1028116_+	autolysin	NA	A0A1W6JQU5	Staphylococcus_phage	37.9	9.3e-37
WP_105965364.1|1028647_1030276_+	FAD-dependent oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	61.7	7.9e-13
WP_037574486.1|1030665_1031712_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	52.9	7.9e-107
WP_037574483.1|1031716_1032346_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	55.7	1.2e-57
WP_037574481.1|1032359_1033541_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	65.4	6.5e-150
WP_037574478.1|1033558_1034017_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	68.0	2.2e-53
WP_151364883.1|1034279_1035326_-	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	68.3	2.4e-124
1034172:1034193	attR	GGTAAATTTTGATGGCTATTTT	NA	NA	NA	NA
WP_145400724.1|1035853_1036186_+	hypothetical protein	NA	NA	NA	NA	NA
WP_145401813.1|1036417_1037716_+|transposase	ISL3 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	20.9	4.2e-09
WP_037574472.1|1037879_1038701_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_145400725.1|1038821_1039778_+	L-lactate dehydrogenase	NA	NA	NA	NA	NA
WP_145400726.1|1039922_1040333_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_037574463.1|1040450_1041023_-	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	58.3	1.8e-60
WP_145400727.1|1041019_1041979_-	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	80.3	2.2e-63
WP_145400728.1|1042090_1043272_+	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	63.4	4.5e-135
WP_145400729.1|1043635_1046047_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	80.2	0.0e+00
WP_037574451.1|1046073_1046385_+	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	69.9	7.7e-34
WP_145400731.1|1046656_1047919_-	aminoacetone oxidase family FAD-binding enzyme	NA	A0A2H4PQX1	Staphylococcus_phage	77.8	3.1e-33
>prophage 2
NZ_CP046028	Staphylococcus chromogenes strain 1401 chromosome, complete genome	2350748	1158388	1167565	2350748	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_037574221.1|1158388_1159384_+	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.9	7.5e-06
WP_145400799.1|1159401_1160427_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_165885665.1|1160445_1161585_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	45.5	5.3e-88
WP_037574211.1|1161600_1161864_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	52.6	8.0e-08
WP_165885666.1|1162232_1164512_+	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	32.4	1.4e-28
WP_165885667.1|1164752_1167035_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	30.5	5.3e-71
WP_037574204.1|1167046_1167565_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	48.0	1.2e-26
>prophage 3
NZ_CP046028	Staphylococcus chromogenes strain 1401 chromosome, complete genome	2350748	1692613	1701040	2350748		Prochlorococcus_phage(33.33%)	9	NA	NA
WP_145401094.1|1692613_1693180_-	phosphoribosylglycinamide formyltransferase	NA	E3SNR5	Prochlorococcus_phage	38.5	1.8e-28
WP_145401095.1|1693182_1694211_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	42.2	1.0e-61
WP_145401096.1|1694215_1695637_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	33.4	1.9e-50
WP_145401097.1|1695615_1697805_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	38.5	2.1e-133
WP_145401098.1|1697797_1698469_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
WP_037571855.1|1698468_1698738_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_037571857.1|1698739_1699447_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0E3HWF9	Synechococcus_phage	41.6	2.1e-47
WP_105963381.1|1699443_1700571_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_145401099.1|1700557_1701040_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	43.3	6.8e-21
>prophage 4
NZ_CP046028	Staphylococcus chromogenes strain 1401 chromosome, complete genome	2350748	1850195	1902910	2350748	capsid,portal,head,transposase,holin,plate,terminase,tail,integrase	Staphylococcus_virus(50.0%)	72	1865234:1865251	1890889:1890906
WP_165885819.1|1850195_1851653_-	CHAP domain-containing protein	NA	Q4ZCC3	Staphylococcus_virus	76.0	3.7e-227
WP_165885820.1|1851642_1852068_-|holin	phage holin	holin	Q8SDS8	Staphylococcus_phage	66.9	7.0e-46
WP_165885821.1|1852112_1853426_-|plate	BppU family phage baseplate upper protein	plate	Q4ZC48	Staphylococcus_virus	57.9	1.7e-50
WP_165885822.1|1853441_1855349_-	CHAP domain-containing protein	NA	Q4ZC50	Staphylococcus_virus	75.9	3.6e-283
WP_165885823.1|1855488_1855776_-	DUF2951 family protein	NA	A0A1J0MFW4	Staphylococcus_phage	67.4	1.6e-25
WP_165885824.1|1855822_1855960_-	XkdX family protein	NA	Q4ZCD1	Staphylococcus_virus	62.8	7.5e-10
WP_165885825.1|1855960_1856305_-	hypothetical protein	NA	Q4ZCD2	Staphylococcus_virus	52.7	5.3e-28
WP_165885826.1|1856306_1857848_-|plate	BppU family phage baseplate upper protein	plate	A1BU69	Staphylococcus_virus	45.0	2.7e-111
WP_165885827.1|1857847_1860511_-	peptidase G2	NA	A0A1W6JQM0	Staphylococcus_phage	74.8	0.0e+00
WP_165885828.1|1860522_1862376_-	peptidase	NA	Q4ZC57	Staphylococcus_virus	88.5	0.0e+00
WP_165885829.1|1862387_1863323_-|tail	phage tail protein	tail	Q4ZC58	Staphylococcus_virus	83.0	1.3e-148
WP_165885830.1|1863335_1866272_-|terminase	terminase	terminase	Q4ZC60	Staphylococcus_virus	87.8	6.8e-265
1865234:1865251	attL	TATTTGCCCAGTTTTGAA	NA	NA	NA	NA
WP_165885831.1|1866275_1866560_-	hypothetical protein	NA	Q4ZC61	Staphylococcus_virus	94.6	4.9e-43
WP_165885832.1|1866604_1867108_-	hypothetical protein	NA	Q4ZC62	Staphylococcus_virus	96.4	2.0e-87
WP_165885833.1|1867172_1867715_-|tail	phage major tail protein, TP901-1 family	tail	Q4ZC63	Staphylococcus_virus	98.3	2.3e-97
WP_165885834.1|1867718_1868141_-	DUF3168 domain-containing protein	NA	Q4ZC64	Staphylococcus_virus	95.7	1.7e-71
WP_165885835.1|1868152_1868560_-	HK97 gp10 family phage protein	NA	Q4ZC65	Staphylococcus_virus	95.6	7.6e-74
WP_165885836.1|1868546_1868882_-|head	phage head closure protein	head	Q4ZC66	Staphylococcus_virus	91.0	5.5e-54
WP_107370744.1|1868892_1869243_-|head,tail	phage head-tail adapter protein	head,tail	A0A0N6WMR1	Staphylococcus_phage	88.8	6.2e-56
WP_165805170.1|1869248_1869392_-	hypothetical protein	NA	A0A059T673	Staphylococcus_phage	76.6	3.2e-11
WP_165885837.1|1869384_1870320_-|capsid	phage major capsid protein	capsid	A0A059T7K3	Staphylococcus_phage	96.7	4.4e-165
WP_165885838.1|1870336_1870921_-	DUF4355 domain-containing protein	NA	M9NRJ1	Staphylococcus_phage	86.1	7.1e-65
WP_165885839.1|1871025_1871250_-	hypothetical protein	NA	Q4ZC71	Staphylococcus_virus	83.6	2.7e-28
WP_165885840.1|1871251_1872205_-|capsid	minor capsid protein	capsid	Q4ZC73	Staphylococcus_virus	90.8	2.7e-162
WP_165885970.1|1872167_1873598_-|portal	phage portal protein	portal	A0A0N9BB70	Staphylococcus_phage	89.7	2.3e-250
WP_165885841.1|1873594_1874818_-|terminase	PBSX family phage terminase large subunit	terminase	A0A059T7K2	Staphylococcus_phage	88.7	6.2e-220
WP_165885842.1|1874810_1875305_-|terminase	terminase	terminase	A0A0N9BAX3	Staphylococcus_phage	71.3	1.1e-53
WP_165885843.1|1875758_1876178_-	transcriptional regulator	NA	I1W651	Staphylococcus_phage	66.2	3.4e-45
WP_165885844.1|1876177_1876327_-	hypothetical protein	NA	Q4ZC01	Staphylococcus_virus	91.8	4.8e-18
WP_107378810.1|1876448_1876655_-	hypothetical protein	NA	NA	NA	NA	NA
WP_107377318.1|1876845_1877349_-	dUTPase	NA	A0A1J0MF52	Staphylococcus_phage	68.7	4.7e-57
WP_165885845.1|1877349_1877709_-	nuclease	NA	Q4ZC06	Staphylococcus_virus	89.9	2.2e-56
WP_165885971.1|1877695_1877926_-	hypothetical protein	NA	Q4ZC08	Staphylococcus_virus	84.4	5.3e-24
WP_165885846.1|1878021_1878420_-	hypothetical protein	NA	A0A1J0MFF1	Staphylococcus_phage	39.9	1.2e-10
WP_165885847.1|1878432_1878645_-	hypothetical protein	NA	Q4ZC11	Staphylococcus_virus	65.7	1.5e-20
WP_165885972.1|1878644_1878872_-	DUF3310 domain-containing protein	NA	Q4ZC12	Staphylococcus_virus	94.4	9.6e-34
WP_105985981.1|1878945_1879137_-	hypothetical protein	NA	Q4ZC13	Staphylococcus_virus	64.1	1.3e-15
WP_165885848.1|1879133_1879553_-	hypothetical protein	NA	Q4ZC14	Staphylococcus_virus	43.8	1.4e-22
WP_037567959.1|1879554_1879863_-	VRR-NUC domain-containing protein	NA	A0A1X9I642	Streptococcus_phage	69.0	1.3e-30
WP_037567961.1|1879859_1880063_-	hypothetical protein	NA	H9A0M1	Staphylococcus_phage	47.3	4.9e-05
WP_165885849.1|1880356_1882675_-	DNA primase	NA	Q8W5V7	Listeria_phage	48.8	6.7e-207
WP_165885850.1|1882706_1883207_-	DUF669 domain-containing protein	NA	Q8W5V8	Listeria_phage	44.5	2.8e-33
WP_165885851.1|1883223_1884558_-	DEAD/DEAH box helicase	NA	Q9T1H9	Lactobacillus_phage	45.5	1.8e-108
WP_165885852.1|1884541_1885252_-	AAA family ATPase	NA	A0A2H4JHD3	uncultured_Caudovirales_phage	81.9	2.3e-110
WP_165885853.1|1885251_1885470_-	DUF2483 family protein	NA	Q4ZC24	Staphylococcus_virus	84.7	2.1e-30
WP_157950523.1|1885466_1885733_-	DUF1108 family protein	NA	NA	NA	NA	NA
WP_165885854.1|1885814_1885991_-	hypothetical protein	NA	Q4ZC27	Staphylococcus_virus	68.1	6.3e-09
WP_107362511.1|1885980_1886160_-	hypothetical protein	NA	A0A2H4J149	uncultured_Caudovirales_phage	68.5	4.3e-13
WP_057510934.1|1886260_1886500_+	hypothetical protein	NA	Q4ZC34	Staphylococcus_virus	98.7	7.0e-43
WP_057510935.1|1886489_1886669_-	hypothetical protein	NA	Q4ZC35	Staphylococcus_virus	93.2	4.6e-23
WP_107372884.1|1886681_1886927_-	helix-turn-helix transcriptional regulator	NA	A0A1J0MFJ4	Staphylococcus_phage	92.2	5.5e-35
WP_107372887.1|1887118_1887448_+	helix-turn-helix transcriptional regulator	NA	A0A2H4J641	uncultured_Caudovirales_phage	92.7	2.8e-50
WP_165885855.1|1887460_1887925_+	ImmA/IrrE family metallo-endopeptidase	NA	A0A2K9VBR7	Staphylococcus_phage	66.9	2.0e-54
WP_165885856.1|1887940_1888477_+	hypothetical protein	NA	NA	NA	NA	NA
WP_165885857.1|1888595_1889111_+	hypothetical protein	NA	I6TJR6	Staphylococcus_virus	65.5	1.3e-14
WP_165885858.1|1889172_1890222_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A1J0MF14	Staphylococcus_phage	92.0	2.0e-187
WP_037572364.1|1890289_1891687_-	Fe-S cluster assembly protein SufB	NA	NA	NA	NA	NA
1890889:1890906	attR	TATTTGCCCAGTTTTGAA	NA	NA	NA	NA
WP_037572365.1|1891761_1892211_-	SUF system NifU family Fe-S cluster assembly protein	NA	NA	NA	NA	NA
WP_037573049.1|1892200_1893442_-	cysteine desulfurase	NA	Q2XUY6	environmental_halophage	48.7	1.1e-118
WP_165885859.1|1893557_1894865_-	Fe-S cluster assembly protein SufD	NA	NA	NA	NA	NA
WP_037572369.1|1894886_1895657_-	Fe-S cluster assembly ATPase SufC	NA	A0A2R8FG22	Brazilian_cedratvirus	28.8	6.2e-08
WP_151365144.1|1895960_1896812_+	DUF368 domain-containing protein	NA	NA	NA	NA	NA
WP_145401258.1|1897108_1897939_-	methionine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_037572375.1|1897963_1898659_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_145401260.1|1898651_1899680_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	39.0	1.1e-28
WP_037572379.1|1899918_1900239_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_037572380.1|1900204_1900600_-	topiosmerase	NA	NA	NA	NA	NA
WP_105985886.1|1900682_1901063_-	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_165885860.1|1901133_1901487_-	arsenate reductase family protein	NA	M1PLC0	Streptococcus_phage	52.4	2.2e-21
WP_145401262.1|1901656_1901977_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_145401264.1|1902068_1902575_-|transposase	IS3 family transposase	transposase	A0A0C5AEA5	Paenibacillus_phage	50.6	3.2e-37
WP_145401266.1|1902568_1902910_-|transposase	IS3 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP046028	Staphylococcus chromogenes strain 1401 chromosome, complete genome	2350748	1967070	1976676	2350748		uncultured_Caudovirales_phage(33.33%)	8	NA	NA
WP_145401364.1|1967070_1969176_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	86.0	0.0e+00
WP_037572538.1|1969147_1969537_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	64.3	1.0e-43
WP_037572541.1|1970219_1971092_+	DMT family transporter	NA	NA	NA	NA	NA
WP_037572545.1|1971114_1971615_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	2.7e-52
WP_165885871.1|1971791_1973303_+	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	34.6	1.2e-68
WP_165885872.1|1973541_1974468_+	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	21.3	7.5e-08
WP_037572553.1|1975028_1975556_-	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_165885873.1|1975626_1976676_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.3	3.3e-20
>prophage 1
NZ_CP046030	Staphylococcus chromogenes strain 1401 plasmid unnamed2, complete sequence	43387	0	43171	43387	head,portal,integrase,terminase,tail,capsid	Staphylococcus_phage(62.75%)	61	8997:9013	37865:37881
WP_165886017.1|445_1690_+|capsid	phage major capsid protein	capsid	Q8SDK8	Staphylococcus_phage	79.7	1.6e-178
WP_165886018.1|1702_1861_+	hypothetical protein	NA	A0A1J0MFP2	Staphylococcus_phage	67.3	1.6e-11
WP_165886019.1|1870_2161_+|head,tail	phage head-tail adapter protein	head,tail	A0A1J0MFU4	Staphylococcus_phage	74.2	1.3e-35
WP_165886055.1|2141_2474_+|head,tail	head-tail adaptor protein	head,tail	A0A1J0MG09	Staphylococcus_phage	74.3	1.1e-43
WP_165886020.1|2473_2851_+	hypothetical protein	NA	A0A1J0MGE3	Staphylococcus_phage	68.0	7.1e-42
WP_165886021.1|2847_3210_+	DUF806 family protein	NA	A0A1J0MFP0	Staphylococcus_phage	67.2	1.9e-44
WP_165886022.1|3221_4160_+	hypothetical protein	NA	A0A1J0MFV0	Staphylococcus_phage	81.0	7.8e-138
WP_165886023.1|4228_4675_+	hypothetical protein	NA	A0A1J0MFL9	Staphylococcus_phage	82.4	2.4e-60
WP_165886024.1|4716_4860_+	hypothetical protein	NA	A0A1J0MFX7	Staphylococcus_phage	80.4	3.1e-14
WP_165886025.1|4884_9462_+|tail	phage tail tape measure protein	tail	A0A1J0MFP9	Staphylococcus_phage	71.7	0.0e+00
8997:9013	attL	AGGTATATCTGCTTTGC	NA	NA	NA	NA
WP_165886026.1|9461_10952_+|tail	phage tail protein	tail	A0A1J0MFV2	Staphylococcus_phage	68.3	6.2e-206
WP_165886027.1|10953_14913_+	hypothetical protein	NA	A0A2H4J300	uncultured_Caudovirales_phage	48.7	0.0e+00
WP_165886028.1|14896_15037_+	hypothetical protein	NA	NA	NA	NA	NA
WP_165886029.1|15083_15359_+	hypothetical protein	NA	A0A1J0MFP4	Staphylococcus_phage	84.6	1.3e-37
WP_165886030.1|15400_15745_+	hypothetical protein	NA	NA	NA	NA	NA
WP_060551316.1|15884_16133_+	hypothetical protein	NA	Q4ZD59	Staphylococcus_phage	92.7	2.0e-37
WP_165885630.1|16134_17604_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A1J0MFY3	Staphylococcus_phage	81.0	9.4e-231
WP_060550760.1|18012_18507_-	Asp23/Gls24 family envelope stress response protein	NA	NA	NA	NA	NA
WP_060550761.1|18548_18791_-	DUF2273 domain-containing protein	NA	NA	NA	NA	NA
WP_156407420.1|18811_19363_-	alkaline shock response membrane anchor protein AmaP	NA	NA	NA	NA	NA
WP_060550705.1|20028_21078_-|integrase	site-specific integrase	integrase	W5R968	Staphylococcus_phage	75.0	5.4e-156
WP_165886031.1|21390_22014_+	hypothetical protein	NA	B7T0F3	Staphylococcus_virus	75.4	4.2e-79
WP_165886032.1|23365_23995_-	helix-turn-helix domain-containing protein	NA	A0A0N9SKN0	Staphylococcus_phage	86.5	2.8e-99
WP_165886033.1|24147_24375_+	helix-turn-helix transcriptional regulator	NA	A0A0N7GFI4	Staphylococcus_phage	91.8	1.1e-32
WP_165886034.1|24413_25181_+	phage antirepressor	NA	Q4ZAL8	Staphylococcus_virus	80.2	3.9e-111
WP_019166719.1|25217_25436_+	hypothetical protein	NA	NA	NA	NA	NA
WP_165886035.1|25432_25807_-	hypothetical protein	NA	NA	NA	NA	NA
WP_165886036.1|25867_26758_+	DUF3102 domain-containing protein	NA	A0A2H4JAH5	uncultured_Caudovirales_phage	75.2	2.1e-47
WP_165886037.1|26760_27348_+	hypothetical protein	NA	NA	NA	NA	NA
WP_165886038.1|27359_27581_+	hypothetical protein	NA	A0A0F6N4M2	Staphylococcus_phage	91.8	1.6e-30
WP_165886039.1|27714_27927_-	hypothetical protein	NA	A0A2H4JBA9	uncultured_Caudovirales_phage	58.0	1.3e-16
WP_060550713.1|27999_28212_+	hypothetical protein	NA	A0A1W6JNP3	Staphylococcus_phage	69.6	1.0e-21
WP_165886040.1|28205_28379_+	hypothetical protein	NA	Q4ZC27	Staphylococcus_virus	66.0	1.5e-07
WP_165886041.1|28460_28727_+	DUF1108 family protein	NA	Q4ZDY8	Staphylococcus_virus	38.1	1.3e-10
WP_107389409.1|28723_28942_+	DUF2483 family protein	NA	Q4ZC24	Staphylococcus_virus	81.9	1.8e-29
WP_165886042.1|28938_29583_+	ERF family protein	NA	D2JGK1	Staphylococcus_phage	93.3	2.4e-106
WP_165886043.1|29575_29995_+	single-stranded DNA-binding protein	NA	A0A1J0MFD7	Staphylococcus_phage	86.1	6.7e-49
WP_165886044.1|30008_30683_+	hypothetical protein	NA	A0A1J0MFX6	Staphylococcus_phage	86.5	2.1e-113
WP_165886045.1|30921_31716_+	DnaD domain protein	NA	A0A223LFI6	Staphylococcus_phage	83.8	6.2e-88
WP_165886056.1|31766_32054_+	hypothetical protein	NA	Q4ZC18	Staphylococcus_virus	80.0	1.4e-37
WP_165885614.1|32046_33285_+	AAA family ATPase	NA	Q4ZC17	Staphylococcus_virus	97.8	8.2e-228
WP_165885615.1|33486_33909_+	RusA family crossover junction endodeoxyribonuclease	NA	Q4ZC15	Staphylococcus_virus	92.9	5.7e-72
WP_165885616.1|33910_34330_+	hypothetical protein	NA	Q4ZC14	Staphylococcus_virus	41.6	5.9e-21
WP_165886046.1|34326_34515_+	hypothetical protein	NA	Q4ZC13	Staphylococcus_virus	76.2	5.9e-21
WP_165886047.1|34514_34727_+	hypothetical protein	NA	Q4ZC11	Staphylococcus_virus	65.7	2.5e-20
WP_165886048.1|34739_35138_+	hypothetical protein	NA	A0A1J0MFF1	Staphylococcus_phage	40.6	4.0e-11
WP_060552463.1|35233_35467_+	hypothetical protein	NA	Q4ZC08	Staphylococcus_virus	86.2	1.3e-25
WP_060550730.1|35450_35747_+	hypothetical protein	NA	Q4Z930	Staphylococcus_phage	83.5	3.9e-35
WP_165886049.1|35739_35925_+	hypothetical protein	NA	NA	NA	NA	NA
WP_060550732.1|35917_36148_+	hypothetical protein	NA	NA	NA	NA	NA
WP_060550733.1|36131_36491_+	nuclease	NA	Q4ZC06	Staphylococcus_virus	90.8	4.0e-58
WP_060550734.1|36491_37010_+	dUTP pyrophosphatase	NA	Q4ZC04	Staphylococcus_virus	77.2	4.5e-63
WP_060551333.1|37328_37844_+	hypothetical protein	NA	A0A1D6Z237	Staphylococcus_phage	42.6	3.7e-09
WP_165885622.1|37905_38124_+	hypothetical protein	NA	A0A2H4J460	uncultured_Caudovirales_phage	72.2	2.5e-23
37865:37881	attR	GCAAAGCAGATATACCT	NA	NA	NA	NA
WP_165886050.1|38141_38537_+	hypothetical protein	NA	A0A2H4J610	uncultured_Caudovirales_phage	82.4	2.2e-57
WP_165886051.1|38697_39060_+	hypothetical protein	NA	A0A1J0MFN7	Staphylococcus_phage	68.8	4.9e-40
WP_165886052.1|39064_39442_+	HNH endonuclease	NA	A0A1J0MFT4	Staphylococcus_phage	77.7	9.0e-53
WP_019165882.1|39534_40008_+|terminase	phage terminase small subunit P27 family	terminase	A0A1J0MG04	Staphylococcus_phage	80.9	4.9e-64
WP_165886053.1|40007_41711_+|terminase	terminase	terminase	A0A1J0MGD9	Staphylococcus_phage	87.1	9.0e-294
WP_165886054.1|41724_41922_+	hypothetical protein	NA	A0A1J0MFN2	Staphylococcus_phage	63.1	2.2e-10
WP_165886057.1|41974_43171_+|portal	phage portal protein	portal	D2JLE6	Staphylococcus_phage	86.4	5.2e-195
