The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP045927	Staphylococcus agnetis strain 1379 chromosome, complete genome	2449249	413196	422659	2449249		uncultured_Caudovirales_phage(33.33%)	8	NA	NA
WP_105994967.1|413196_414246_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	24.8	1.5e-17
WP_037567821.1|414317_414851_+	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_037567823.1|414911_415841_-	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	23.9	1.2e-10
WP_060552440.1|416160_417672_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	34.7	1.4e-72
WP_037567828.1|418083_418584_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	70.8	7.7e-52
WP_060552441.1|418597_419482_-	DMT family transporter	NA	NA	NA	NA	NA
WP_037567834.1|420192_420582_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	62.8	1.5e-42
WP_060552442.1|420553_422659_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	86.0	0.0e+00
>prophage 2
NZ_CP045927	Staphylococcus agnetis strain 1379 chromosome, complete genome	2449249	433166	495243	2449249	tail,terminase,portal,head,integrase,protease	Staphylococcus_phage(34.62%)	60	483258:483307	497012:497061
WP_060552448.1|433166_434333_-|protease	cysteine protease	protease	NA	NA	NA	NA
WP_060552449.1|435040_436087_+	undecaprenyl/decaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase	NA	NA	NA	NA	NA
WP_107368846.1|436133_436772_-	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	51.2	4.3e-39
WP_107368847.1|437088_437952_+	DegV family protein	NA	A0A0N9SI50	Staphylococcus_phage	37.9	2.6e-15
WP_107368848.1|438064_439381_+	DEAD/DEAH box helicase family protein	NA	A0A1X9I5S6	Streptococcus_phage	34.4	3.2e-57
WP_086375131.1|439593_440040_+	ComF family protein	NA	NA	NA	NA	NA
WP_060552454.1|440102_440672_+	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA	NA
WP_107368849.1|441198_443727_+	preprotein translocase subunit SecA	NA	NA	NA	NA	NA
WP_165886070.1|443751_444855_+	peptide chain release factor 2	NA	NA	NA	NA	NA
WP_060550605.1|444935_445814_+	CHAP domain-containing protein	NA	NA	NA	NA	NA
WP_037567881.1|445947_446589_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_037567884.1|446594_446831_+	CsbA family protein	NA	NA	NA	NA	NA
WP_165886071.1|446974_448957_+	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_165886072.1|448962_451812_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	57.3	3.7e-311
WP_060550608.1|451808_452213_+	hypothetical protein	NA	NA	NA	NA	NA
WP_060550609.1|452380_453316_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_060550610.1|453315_454170_+	prolipoprotein diacylglyceryl transferase	NA	NA	NA	NA	NA
WP_060550611.1|454153_454639_+	acyltransferase	NA	NA	NA	NA	NA
WP_060550612.1|454655_456092_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_060550613.1|456155_457100_+	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	49.8	6.5e-84
WP_060550614.1|457265_458189_+	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	32.8	4.4e-08
WP_037567903.1|458175_459183_+	YvcK family protein	NA	A1IMD5	Streptococcus_phage	38.2	5.4e-52
WP_165886073.1|459318_460263_+	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	39.3	3.8e-52
WP_107368851.1|460305_460887_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	55.8	8.1e-53
WP_157952346.1|461724_461889_+	hypothetical protein	NA	A0A1S6L1H5	Staphylococcus_phage	68.6	6.7e-13
WP_060550615.1|462988_463573_-	hypothetical protein	NA	NA	NA	NA	NA
WP_037567914.1|463984_464185_+	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	64.6	2.2e-18
WP_060550616.1|464233_464437_-	TM2 domain-containing protein	NA	NA	NA	NA	NA
WP_107368424.1|464606_465413_+	VOC family protein	NA	NA	NA	NA	NA
WP_165886074.1|465634_467140_-	peptidase M4 family protein	NA	NA	NA	NA	NA
WP_107368422.1|467342_467831_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_060550620.1|467935_468838_-	TIGR01777 family protein	NA	NA	NA	NA	NA
WP_060550621.1|469383_470046_+	DUF4887 domain-containing protein	NA	NA	NA	NA	NA
WP_060550622.1|470106_470364_-	hypothetical protein	NA	NA	NA	NA	NA
WP_060550623.1|470656_471673_+	hypothetical protein	NA	NA	NA	NA	NA
WP_037566696.1|471819_472827_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_060550624.1|473017_474208_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_037566700.1|474269_475031_+	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_060550625.1|475032_476553_+	2,3-bisphosphoglycerate-independent phosphoglycerate mutase	NA	NA	NA	NA	NA
WP_037566704.1|476695_478000_+	phosphopyruvate hydratase	NA	A0A1X9I5Z8	Streptococcus_phage	81.2	1.5e-195
WP_107368420.1|478313_478781_+	hypothetical protein	NA	NA	NA	NA	NA
WP_037566707.1|478848_479082_+	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_037566708.1|479234_479975_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_107368419.1|480010_482365_+	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	37.4	9.5e-92
WP_037566711.1|482381_482846_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	89.0	4.0e-71
483258:483307	attL	AATCCCGCCGCCTCCACTATGTAGCCTATAACCCTTGCGGTTATAGGCTT	NA	NA	NA	NA
WP_165805060.1|483370_483601_-	hypothetical protein	NA	NA	NA	NA	NA
WP_165805059.1|483612_484719_-|integrase	site-specific integrase	integrase	A0A1B2AQ00	Phage_Wrath	43.6	3.1e-77
WP_165886075.1|484752_485517_-	helix-turn-helix transcriptional regulator	NA	A0A1W6JQE6	Staphylococcus_phage	46.8	6.8e-07
WP_165805057.1|485668_485887_+	helix-turn-helix transcriptional regulator	NA	A0A0S2GLE9	Bacillus_phage	47.4	1.2e-06
WP_165805056.1|485899_486103_+	pathogenicity island protein	NA	A0A1W6JQF4	Staphylococcus_phage	74.6	5.2e-23
WP_165805055.1|486105_486411_+	DUF1474 family protein	NA	Q4ZE75	Staphylococcus_phage	41.2	4.6e-15
WP_165805054.1|486445_487333_+	mobile element-associated protein	NA	A0A1W6JQL5	Staphylococcus_phage	39.5	7.3e-53
WP_165805053.1|487348_488806_+	virulence-associated protein E	NA	A0A1W6JQD6	Staphylococcus_phage	79.9	1.9e-231
WP_165805052.1|489085_489433_+	pathogenicity island protein	NA	A0A1W6JQD5	Staphylococcus_phage	72.3	2.4e-44
WP_165805068.1|489565_490744_+|portal	phage portal protein	portal	A0A1L2BY94	Clostridium_phage	37.7	4.6e-63
WP_165805051.1|490730_491297_+|head,protease	HK97 family phage prohead protease	head,protease	A0A1B1PA08	Enterococcus_phage	35.9	2.7e-21
WP_165805050.1|492583_492865_+|head,tail	phage gp6-like head-tail connector protein	head,tail	NA	NA	NA	NA
WP_165805049.1|492857_493151_+	HNH endonuclease	NA	R9TNN2	Paenibacillus_phage	47.1	5.0e-19
WP_165805048.1|493286_493607_+	hypothetical protein	NA	NA	NA	NA	NA
WP_165805047.1|493599_495243_+|terminase	terminase large subunit	terminase	A0A290GJW3	Caldibacillus_phage	50.1	1.8e-153
497012:497061	attR	AATCCCGCCGCCTCCACTATGTAGCCTATAACCCTTGCGGTTATAGGCTT	NA	NA	NA	NA
>prophage 3
NZ_CP045927	Staphylococcus agnetis strain 1379 chromosome, complete genome	2449249	662982	671410	2449249		Prochlorococcus_phage(33.33%)	9	NA	NA
WP_107368606.1|662982_663465_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	1.0e-21
WP_060550787.1|663451_664579_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_085622582.1|664575_665283_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	G8EYA2	Synechococcus_phage	43.3	9.6e-48
WP_037566003.1|665285_665555_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_039646367.1|665554_666226_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
WP_107368607.1|666218_668408_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.3	6.9e-137
WP_060552466.1|668386_669808_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	33.0	1.6e-49
WP_060550790.1|669812_670841_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	42.9	3.1e-63
WP_085622578.1|670843_671410_+	phosphoribosylglycinamide formyltransferase	NA	E3SNR5	Prochlorococcus_phage	37.3	1.1e-25
>prophage 4
NZ_CP045927	Staphylococcus agnetis strain 1379 chromosome, complete genome	2449249	726645	819123	2449249	tail,capsid,terminase,tRNA,portal,head,integrase,holin,protease	Staphylococcus_phage(71.15%)	101	751846:751864	795553:795571
WP_107368703.1|726645_727710_+|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2I2L4E3	Orpheovirus	34.7	3.6e-30
WP_107368704.1|727703_730109_+|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_060550830.1|730327_731254_-	ribonuclease HIII	NA	NA	NA	NA	NA
WP_037566133.1|731453_731720_+	cell division protein ZapA	NA	NA	NA	NA	NA
WP_085622564.1|731721_732243_+	CvpA family protein	NA	NA	NA	NA	NA
WP_060550832.1|732318_734028_+	DNA polymerase/3'-5' exonuclease PolX	NA	A0A1V0SC46	Catovirus	23.7	9.5e-17
WP_107368705.1|734208_736557_+	endonuclease MutS2	NA	F2QAF8	Phaeocystis_pouchetii_virus	22.6	2.6e-09
WP_107368706.1|736632_736947_+	thioredoxin	NA	A0A1X9I9P5	Staphylococcus_phage	48.5	5.4e-27
WP_107368707.1|737141_738932_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_107368708.1|739094_739706_+	succinate dehydrogenase	NA	NA	NA	NA	NA
WP_037566150.1|739830_741597_+	succinate dehydrogenase flavoprotein subunit	NA	NA	NA	NA	NA
WP_107368709.1|741596_742415_+	succinate dehydrogenase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_037566154.1|742609_743410_+	glutamate racemase	NA	NA	NA	NA	NA
WP_105995273.1|743423_744011_+	XTP/dITP diphosphatase	NA	NA	NA	NA	NA
WP_105995272.1|744007_744508_+	metallophosphoesterase	NA	NA	NA	NA	NA
WP_105995271.1|744617_744932_-	hypothetical protein	NA	NA	NA	NA	NA
WP_107368710.1|745066_745927_+	M23 family metallopeptidase	NA	A0A2K9VGT1	Pontimonas_phage	34.9	1.3e-06
WP_107368711.1|746330_747569_-	aminoacyltransferase	NA	NA	NA	NA	NA
WP_157951762.1|747856_748204_-	complement inhibitor SCIN family protein	NA	NA	NA	NA	NA
WP_060550844.1|751178_751358_+	hypothetical protein	NA	NA	NA	NA	NA
751846:751864	attL	TTAGCGTCCTGGGAGGGAT	NA	NA	NA	NA
WP_107368713.1|751925_752951_-|integrase	site-specific integrase	integrase	A0A0D4DCG3	Staphylococcus_phage	95.0	3.4e-187
WP_107369028.1|753164_753698_+	hypothetical protein	NA	NA	NA	NA	NA
WP_107369029.1|753847_754027_-	hypothetical protein	NA	NA	NA	NA	NA
WP_157950565.1|754656_754833_-	hypothetical protein	NA	NA	NA	NA	NA
WP_105989105.1|754903_755389_-	hypothetical protein	NA	NA	NA	NA	NA
WP_157950627.1|755440_755584_-	hypothetical protein	NA	NA	NA	NA	NA
WP_107368750.1|755604_756318_-	helix-turn-helix transcriptional regulator	NA	M9NUL0	Staphylococcus_phage	90.3	6.1e-119
WP_107368752.1|756451_756721_+	helix-turn-helix transcriptional regulator	NA	H9A0Y0	Staphylococcus_phage	93.3	9.0e-39
WP_165805336.1|756734_756899_+	hypothetical protein	NA	A0A2H4JE94	uncultured_Caudovirales_phage	56.4	1.7e-08
WP_105985969.1|756905_757175_-	DUF3892 domain-containing protein	NA	A0A059NT53	Lactococcus_phage	44.4	1.2e-11
WP_037566186.1|758145_758346_+	hypothetical protein	NA	A7TWL8	Staphylococcus_phage	48.5	4.8e-05
WP_037566188.1|758329_758584_-	hypothetical protein	NA	A7TWL9	Staphylococcus_phage	69.3	1.4e-25
WP_107368749.1|758668_758929_+	hypothetical protein	NA	NA	NA	NA	NA
WP_107368748.1|759194_759521_+	DUF771 domain-containing protein	NA	Q4ZD49	Staphylococcus_phage	81.9	4.1e-46
WP_107368747.1|759908_760175_+	DUF1108 family protein	NA	A0A1J0MFD3	Staphylococcus_phage	32.1	4.4e-06
WP_107363742.1|760171_760390_+	DUF2483 family protein	NA	Q4ZC24	Staphylococcus_virus	83.3	6.2e-30
WP_107368746.1|760390_761158_+	AAA family ATPase	NA	A0A1W6JPT0	Staphylococcus_phage	88.1	2.9e-122
WP_107368745.1|761181_761724_+	DUF669 domain-containing protein	NA	A9CR64	Staphylococcus_phage	72.8	3.1e-70
WP_107368744.1|761735_762410_+	hypothetical protein	NA	A0A1J0MFX6	Staphylococcus_phage	76.1	8.2e-97
WP_157950716.1|762482_763106_-	hypothetical protein	NA	Q4ZBF5	Staphylococcus_virus	43.5	4.1e-26
WP_107368742.1|763168_763897_+	alpha/beta hydrolase	NA	Q6R839	Staphylococcus_virus	73.6	2.0e-80
WP_107368741.1|763897_764683_+	ATP-binding protein	NA	A0A1W6JPS4	Staphylococcus_phage	62.8	2.0e-94
WP_107371099.1|764846_765284_+	RusA family crossover junction endodeoxyribonuclease	NA	A0A1J0MFP7	Staphylococcus_phage	74.8	2.4e-57
WP_107368739.1|765276_765885_+	hypothetical protein	NA	A0A1W6JNH3	Staphylococcus_phage	25.8	2.1e-06
WP_107368738.1|765894_766086_+	hypothetical protein	NA	Q4ZC13	Staphylococcus_virus	96.8	1.2e-29
WP_107368737.1|766085_766298_+	DUF3269 family protein	NA	Q4ZC11	Staphylococcus_virus	91.4	1.3e-32
WP_107368736.1|766309_766540_+	hypothetical protein	NA	NA	NA	NA	NA
WP_107368735.1|766523_766883_+	nuclease	NA	Q4ZC06	Staphylococcus_virus	93.3	1.6e-59
WP_107368734.1|766883_767132_+	hypothetical protein	NA	NA	NA	NA	NA
WP_107368733.1|767470_767722_+	hypothetical protein	NA	NA	NA	NA	NA
WP_107368732.1|767891_768539_+	hypothetical protein	NA	D2JLD8	Staphylococcus_phage	64.5	1.2e-76
WP_107368731.1|768566_768974_+	hypothetical protein	NA	A0A1W6JQ60	Staphylococcus_phage	73.3	5.0e-49
WP_107368730.1|769144_769507_+	hypothetical protein	NA	A0A1J0MFN7	Staphylococcus_phage	68.0	1.4e-39
WP_107368729.1|769511_769889_+	HNH endonuclease	NA	A0A1J0MFT4	Staphylococcus_phage	76.0	5.8e-52
WP_105995231.1|769981_770455_+|terminase	phage terminase small subunit P27 family	terminase	A0A1J0MG04	Staphylococcus_phage	79.0	3.5e-62
WP_105995230.1|770454_772158_+|terminase	terminase	terminase	A0A1J0MGD9	Staphylococcus_phage	87.6	4.8e-295
WP_107368751.1|772433_773672_+|portal	phage portal protein	portal	D2JLE6	Staphylococcus_phage	86.1	4.5e-194
WP_107368728.1|773622_774222_+|head,protease	HK97 family phage prohead protease	head,protease	D2JLE7	Staphylococcus_phage	88.1	1.8e-95
WP_165886084.1|774290_775538_+|capsid	phage major capsid protein	capsid	Q8SDK8	Staphylococcus_phage	82.4	1.4e-182
WP_164671795.1|775550_775709_+	hypothetical protein	NA	A0A1J0MFP2	Staphylococcus_phage	69.2	3.5e-11
WP_107368726.1|775718_776009_+|head,tail	phage head-tail adapter protein	head,tail	A0A1J0MFU4	Staphylococcus_phage	73.1	1.0e-35
WP_107368725.1|775989_776322_+|head,tail	head-tail adaptor protein	head,tail	A0A1J0MG09	Staphylococcus_phage	73.4	5.7e-43
WP_107368724.1|776321_776699_+	hypothetical protein	NA	A0A1J0MGE3	Staphylococcus_phage	65.6	6.7e-40
WP_107368723.1|776695_777058_+	DUF806 family protein	NA	A0A1J0MFP0	Staphylococcus_phage	68.9	1.1e-44
WP_107368722.1|777069_778008_+	hypothetical protein	NA	A0A1J0MFV0	Staphylococcus_phage	82.0	5.4e-139
WP_037568160.1|778075_778522_+	hypothetical protein	NA	A0A1J0MFL9	Staphylococcus_phage	73.6	1.1e-54
WP_164671807.1|778563_778707_+	hypothetical protein	NA	A0A1J0MFX7	Staphylococcus_phage	82.6	1.4e-14
WP_107368721.1|778732_783283_+|tail	phage tail tape measure protein	tail	A0A1J0MFP9	Staphylococcus_phage	78.6	0.0e+00
WP_107368720.1|783282_784773_+|tail	phage tail protein	tail	A0A1J0MFV2	Staphylococcus_phage	67.5	2.6e-204
WP_107368719.1|784774_788788_+	hypothetical protein	NA	A0A2H4J300	uncultured_Caudovirales_phage	46.8	0.0e+00
WP_165886085.1|788771_788912_+	hypothetical protein	NA	NA	NA	NA	NA
WP_107368718.1|788958_789261_+	hypothetical protein	NA	A0A1J0MFP4	Staphylococcus_phage	82.8	6.8e-35
WP_107368717.1|789279_789579_+	DUF2951 family protein	NA	A0A1J0MFW4	Staphylococcus_phage	92.9	6.0e-44
WP_107368715.1|790054_790351_+|holin	phage holin	holin	H9A0X3	Staphylococcus_phage	58.3	5.6e-26
WP_107368714.1|790360_791749_+	CHAP domain-containing protein	NA	Q4ZBG9	Staphylococcus_virus	55.5	7.7e-150
WP_105971417.1|793394_793958_+	hypothetical protein	NA	W5R8Q1	Staphylococcus_phage	85.9	3.3e-91
WP_107368870.1|794094_794286_+	hypothetical protein	NA	NA	NA	NA	NA
WP_107368871.1|794581_795256_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_103346120.1|795801_796014_-	hypothetical protein	NA	NA	NA	NA	NA
795553:795571	attR	TTAGCGTCCTGGGAGGGAT	NA	NA	NA	NA
WP_107368872.1|796053_796494_-	hypothetical protein	NA	NA	NA	NA	NA
WP_060550846.1|797003_798308_-	potassium transporter KtrB	NA	NA	NA	NA	NA
WP_103346173.1|798511_798586_-	alpha-1/alpha-2 family phenol-soluble modulin	NA	NA	NA	NA	NA
WP_037564837.1|799110_799245_+	beta-class phenol-soluble modulin	NA	NA	NA	NA	NA
WP_107368873.1|799342_799792_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_107368874.1|800203_801817_+	bacillithiol biosynthesis cysteine-adding enzyme BshC	NA	NA	NA	NA	NA
WP_037564833.1|801962_802394_+	division/cell wall cluster transcriptional repressor MraZ	NA	NA	NA	NA	NA
WP_060550849.1|802428_803364_+	16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH	NA	NA	NA	NA	NA
WP_103346123.1|803381_803795_+	cell division protein FtsL	NA	NA	NA	NA	NA
WP_060550851.1|803775_805917_+	penicillin-binding protein	NA	NA	NA	NA	NA
WP_060550852.1|806079_807045_+	phospho-N-acetylmuramoyl-pentapeptide- transferase	NA	NA	NA	NA	NA
WP_060550853.1|807045_808395_+	UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase	NA	NA	NA	NA	NA
WP_107368875.1|808409_809297_+	FtsQ-type POTRA domain-containing protein	NA	NA	NA	NA	NA
WP_060550855.1|809404_810844_+	cell division protein FtsA	NA	NA	NA	NA	NA
WP_037564821.1|810873_812043_+	cell division protein FtsZ	NA	NA	NA	NA	NA
WP_060550856.1|812222_813014_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_037564817.1|813040_813715_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_085622292.1|813720_814332_+	cell division protein SepF	NA	NA	NA	NA	NA
WP_060550858.1|814343_814634_+	YggT family protein	NA	NA	NA	NA	NA
WP_060550859.1|814774_815545_+	RNA-binding protein	NA	NA	NA	NA	NA
WP_060550860.1|815568_816186_+	DivIVA domain-containing protein	NA	NA	NA	NA	NA
WP_103346129.1|816375_819123_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	26.0	2.8e-87
>prophage 5
NZ_CP045927	Staphylococcus agnetis strain 1379 chromosome, complete genome	2449249	1248866	1260428	2449249	tRNA	uncultured_Mediterranean_phage(42.86%)	8	NA	NA
WP_037565469.1|1248866_1251056_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A2I2L310	Orpheovirus	35.5	1.9e-09
WP_037565470.1|1251467_1251986_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	48.8	4.0e-27
WP_060551192.1|1251997_1254280_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	30.1	1.1e-68
WP_107368634.1|1254372_1256652_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	31.5	1.1e-28
WP_037565473.1|1256960_1257224_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	49.1	8.8e-07
WP_060551194.1|1257240_1258380_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	45.5	2.4e-88
WP_107368635.1|1258393_1259419_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_060551196.1|1259432_1260428_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.9	7.5e-06
>prophage 6
NZ_CP045927	Staphylococcus agnetis strain 1379 chromosome, complete genome	2449249	1363237	1451072	2449249	tail,capsid,terminase,tRNA,integrase,portal,head,plate,holin,protease	Staphylococcus_phage(48.75%)	111	1372655:1372670	1456487:1456502
WP_060551272.1|1363237_1363903_-|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	tRNA	NA	NA	NA	NA
WP_060551273.1|1363917_1364709_-	phosphotransferase family protein	NA	NA	NA	NA	NA
WP_085622474.1|1364937_1365786_-	D-amino-acid transaminase	NA	NA	NA	NA	NA
WP_107368799.1|1365787_1367197_-	dipeptidase PepV	NA	NA	NA	NA	NA
WP_060551276.1|1367381_1367801_-	YtxH domain-containing protein	NA	NA	NA	NA	NA
WP_060551277.1|1367872_1368580_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_107368798.1|1368579_1370220_-	polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_165886107.1|1370336_1371599_+	NAD(P)/FAD-dependent oxidoreductase	NA	A0A2H4PQX1	Staphylococcus_phage	76.7	5.0e-31
WP_037565581.1|1371641_1371953_-	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	67.0	4.2e-32
WP_107368796.1|1371975_1374387_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	80.8	0.0e+00
1372655:1372670	attL	TTACTCATTTTTTCAT	NA	NA	NA	NA
WP_107368795.1|1374747_1375929_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	64.4	1.3e-137
WP_107368794.1|1376040_1377000_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	77.8	1.0e-60
WP_060551283.1|1376996_1377560_+	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	53.0	9.6e-51
WP_060551284.1|1377657_1378068_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_037565589.1|1378210_1379164_-	L-lactate dehydrogenase	NA	NA	NA	NA	NA
WP_060551285.1|1379292_1380114_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_165886108.1|1380249_1380582_-	hypothetical protein	NA	NA	NA	NA	NA
WP_060551287.1|1381116_1382157_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	66.4	1.5e-121
WP_037565594.1|1382254_1382713_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	65.8	2.4e-52
WP_165886109.1|1382724_1383906_-	GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	65.9	1.5e-149
WP_107368793.1|1383919_1384549_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	56.7	3.1e-58
WP_165886110.1|1384553_1385600_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	52.0	4.8e-104
WP_107376407.1|1385985_1387701_-	FAD-dependent oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	56.5	1.3e-13
WP_060551292.1|1388016_1388883_-	autolysin	NA	A0A0E3T9J6	Staphylococcus_phage	41.0	3.8e-38
WP_060551293.1|1389046_1389271_-	hypothetical protein	NA	NA	NA	NA	NA
WP_157952352.1|1389471_1389933_+	RNA polymerase subunit sigma	NA	A0A2H4PQT5	Staphylococcus_phage	35.4	2.0e-17
WP_107369012.1|1389948_1390383_+	hypothetical protein	NA	NA	NA	NA	NA
WP_060551295.1|1390365_1390815_-	hypothetical protein	NA	NA	NA	NA	NA
WP_037565603.1|1390908_1391619_-	transaldolase	NA	M1PR54	Cyanophage	38.5	2.6e-21
WP_037565604.1|1391772_1392075_+	hypothetical protein	NA	NA	NA	NA	NA
WP_060551296.1|1392095_1392461_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	52.1	2.9e-24
WP_060551297.1|1392457_1392823_+	fluoride efflux transporter CrcB	NA	NA	NA	NA	NA
WP_085622465.1|1393007_1393844_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	64.1	1.5e-100
WP_060551299.1|1394057_1394966_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	69.0	1.6e-92
WP_037565609.1|1395054_1396254_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	79.6	1.6e-180
WP_060551301.1|1396685_1398266_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	76.4	1.4e-243
WP_060551302.1|1398290_1399076_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	61.2	1.6e-83
WP_060551303.1|1399056_1399527_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	49.0	2.9e-40
WP_037565613.1|1399589_1399820_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	78.4	2.9e-30
WP_060551304.1|1399816_1400806_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	47.4	1.3e-87
WP_060551305.1|1400802_1402209_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	52.4	4.9e-136
WP_060551306.1|1402485_1402779_+	hypothetical protein	NA	NA	NA	NA	NA
WP_060551307.1|1403286_1403778_-	Asp23/Gls24 family envelope stress response protein	NA	NA	NA	NA	NA
WP_060551308.1|1403815_1404058_-	DUF2273 domain-containing protein	NA	NA	NA	NA	NA
WP_165886111.1|1404078_1404624_-	alkaline shock response membrane anchor protein AmaP	NA	NA	NA	NA	NA
WP_107369005.1|1405185_1406040_-|protease	PrsW family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_060551311.1|1406753_1407599_-|protease	PrsW family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_165805218.1|1409114_1410503_-	CHAP domain-containing protein	NA	Q4ZBG9	Staphylococcus_virus	55.7	1.6e-147
WP_107396743.1|1410528_1410825_-|holin	phage holin	holin	H9A0X3	Staphylococcus_phage	55.2	2.4e-24
WP_165886112.1|1410870_1413006_-|plate	BppU family phage baseplate upper protein	plate	A0A059T5B3	Staphylococcus_phage	59.6	1.5e-229
WP_165886176.1|1413021_1414800_-	CHAP domain-containing protein	NA	Q4ZC50	Staphylococcus_virus	80.6	2.0e-288
WP_165805076.1|1414904_1415525_-	AP2 domain-containing protein	NA	A0A2H4J2S8	uncultured_Caudovirales_phage	43.9	1.8e-37
WP_103346113.1|1416012_1416312_-	DUF2951 family protein	NA	B7T0E7	Staphylococcus_virus	72.7	2.8e-25
WP_103346112.1|1416337_1416475_-	XkdX family protein	NA	Q4ZC52	Staphylococcus_virus	85.7	7.8e-15
WP_165805222.1|1416471_1416822_-	hypothetical protein	NA	Q4ZCD2	Staphylococcus_virus	58.3	2.1e-32
WP_165805221.1|1416823_1418365_-|plate	BppU family phage baseplate upper protein	plate	A1BU69	Staphylococcus_virus	51.4	7.8e-103
WP_165805220.1|1418364_1421028_-	peptidase G2	NA	A0A1W6JQM0	Staphylococcus_phage	74.9	0.0e+00
WP_165885828.1|1421039_1422893_-	peptidase	NA	Q4ZC57	Staphylococcus_virus	88.5	0.0e+00
WP_165805180.1|1422904_1423840_-|tail	phage tail protein	tail	Q4ZC58	Staphylococcus_virus	83.3	4.4e-149
WP_165805179.1|1423852_1427038_-|terminase	terminase	terminase	Q4ZC60	Staphylococcus_virus	67.5	3.5e-198
WP_165805181.1|1427041_1427326_-	hypothetical protein	NA	Q4ZC61	Staphylococcus_virus	95.7	2.2e-43
WP_165805689.1|1427370_1427874_-	hypothetical protein	NA	Q4ZC62	Staphylococcus_virus	98.2	2.7e-89
WP_103346103.1|1427938_1428481_-|tail	phage tail protein	tail	Q4ZC63	Staphylococcus_virus	89.4	4.3e-88
WP_165805688.1|1428484_1428907_-	DUF3168 domain-containing protein	NA	Q4ZC64	Staphylococcus_virus	93.6	1.5e-69
WP_165805687.1|1428919_1429327_-	HK97 gp10 family phage protein	NA	Q4ZC65	Staphylococcus_virus	97.0	4.5e-74
WP_165804987.1|1429313_1429649_-|head	phage head closure protein	head	Q4ZC66	Staphylococcus_virus	92.8	3.5e-56
WP_165804986.1|1429653_1429950_-|head,tail	phage head-tail adapter protein	head,tail	Q4ZC67	Staphylococcus_virus	94.9	1.2e-47
WP_165804985.1|1429949_1430231_-	Rho termination protein	NA	Q4ZC68	Staphylococcus_virus	93.5	1.0e-40
WP_165804984.1|1430249_1431074_-|capsid	N4-gp56 family major capsid protein	capsid	Q4ZC69	Staphylococcus_virus	89.6	5.8e-129
WP_165804983.1|1431090_1431684_-	hypothetical protein	NA	Q4ZC70	Staphylococcus_virus	88.9	1.3e-45
WP_165804982.1|1431799_1432033_-	hypothetical protein	NA	M9NUJ2	Staphylococcus_phage	94.8	4.0e-35
WP_165804981.1|1432034_1432988_-|capsid	minor capsid protein	capsid	Q4ZC73	Staphylococcus_virus	91.7	1.2e-162
WP_165804980.1|1432950_1434375_-|portal	phage portal protein	portal	Q4ZC74	Staphylococcus_virus	97.7	1.6e-275
WP_165804979.1|1434380_1435646_-|terminase	PBSX family phage terminase large subunit	terminase	Q4ZC75	Staphylococcus_virus	98.6	3.4e-245
WP_165804978.1|1435629_1436010_-	DNA-binding protein	NA	Q4ZC76	Staphylococcus_virus	65.9	3.0e-40
WP_165886113.1|1436205_1436601_-	hypothetical protein	NA	A0A2H4J610	uncultured_Caudovirales_phage	84.0	1.1e-58
WP_165886114.1|1436618_1436837_-	hypothetical protein	NA	A0A2H4J460	uncultured_Caudovirales_phage	75.0	3.9e-24
WP_165886115.1|1436898_1437321_-	hypothetical protein	NA	NA	NA	NA	NA
WP_165886116.1|1437331_1437490_-	hypothetical protein	NA	NA	NA	NA	NA
WP_165886117.1|1437495_1437717_-	hypothetical protein	NA	NA	NA	NA	NA
WP_165886118.1|1437816_1438014_-	hypothetical protein	NA	NA	NA	NA	NA
WP_165886119.1|1438064_1438364_-	hypothetical protein	NA	U3PBR4	Staphylococcus_phage	77.8	1.1e-37
WP_165886120.1|1438363_1438618_-	hypothetical protein	NA	NA	NA	NA	NA
WP_165886121.1|1438618_1438978_-	nuclease	NA	Q4ZC06	Staphylococcus_virus	91.6	1.4e-58
WP_165804970.1|1438961_1439192_-	hypothetical protein	NA	NA	NA	NA	NA
WP_165804969.1|1439178_1439436_-	hypothetical protein	NA	Q4ZC08	Staphylococcus_virus	63.4	6.4e-18
WP_165886122.1|1439432_1439831_-	hypothetical protein	NA	Q4ZC09	Staphylococcus_virus	48.1	1.7e-25
WP_015978228.1|1439849_1440029_-	hypothetical protein	NA	Q4ZC10	Staphylococcus_virus	100.0	1.9e-29
WP_165886177.1|1440041_1440254_-	DUF3269 family protein	NA	Q4ZC11	Staphylococcus_virus	84.3	6.6e-29
WP_165804966.1|1440253_1440445_-	hypothetical protein	NA	Q4ZC13	Staphylococcus_virus	98.4	5.4e-30
WP_165804965.1|1440441_1440873_-	hypothetical protein	NA	Q4ZC14	Staphylococcus_virus	94.4	3.1e-73
WP_165805671.1|1440874_1441183_-	VRR-NUC domain-containing protein	NA	H9A0S4	Staphylococcus_phage	64.0	6.5e-33
WP_165805670.1|1441169_1441388_-	hypothetical protein	NA	A0A1J0MFB5	Staphylococcus_phage	77.5	5.4e-26
WP_165805715.1|1441387_1442584_-	AAA family ATPase	NA	H9A0S1	Staphylococcus_phage	65.6	9.6e-149
WP_165804951.1|1442621_1442969_-	hypothetical protein	NA	I6SN23	Staphylococcus_virus	38.6	4.6e-19
WP_165804952.1|1442968_1443673_-	DnaD domain protein	NA	Q4ZC19	Staphylococcus_virus	78.4	3.6e-95
WP_165804953.1|1443665_1444343_-	hypothetical protein	NA	A0A1J0MFX6	Staphylococcus_phage	85.3	6.5e-110
WP_165804954.1|1444354_1444774_-	single-stranded DNA-binding protein	NA	A0A1J0MFD7	Staphylococcus_phage	80.0	6.0e-58
WP_165804955.1|1444766_1445411_-	ERF family protein	NA	D2JGK1	Staphylococcus_phage	93.8	4.9e-107
WP_015978220.1|1445407_1445626_-	DUF2483 family protein	NA	Q4ZC24	Staphylococcus_virus	100.0	1.8e-34
WP_165805669.1|1445622_1445892_-	hypothetical protein	NA	Q4ZC25	Staphylococcus_virus	74.2	9.9e-30
WP_165886123.1|1445972_1446149_-	hypothetical protein	NA	NA	NA	NA	NA
WP_107396783.1|1446142_1446355_-	hypothetical protein	NA	A0A1W6JNP3	Staphylococcus_phage	76.8	9.9e-25
WP_165804950.1|1446503_1446665_+	hypothetical protein	NA	NA	NA	NA	NA
WP_165804958.1|1446681_1446915_-	hypothetical protein	NA	NA	NA	NA	NA
WP_165804959.1|1446927_1447695_-	Rha family transcriptional regulator	NA	A0A141VTQ8	Staphylococcus_phage	85.8	2.3e-119
WP_165804960.1|1447707_1447950_-	helix-turn-helix transcriptional regulator	NA	A0A2H4J8S7	uncultured_Caudovirales_phage	58.8	1.6e-18
WP_107360854.1|1448124_1448457_+	helix-turn-helix transcriptional regulator	NA	A0A2H4J2L8	uncultured_Caudovirales_phage	70.9	1.2e-37
WP_165804961.1|1448471_1448936_+	ImmA/IrrE family metallo-endopeptidase	NA	Q4ZC40	Staphylococcus_virus	66.7	4.5e-54
WP_143564875.1|1448950_1449958_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	71.4	7.0e-44
WP_165804962.1|1450022_1451072_+|integrase	site-specific integrase	integrase	W5R968	Staphylococcus_phage	74.5	5.4e-156
1456487:1456502	attR	TTACTCATTTTTTCAT	NA	NA	NA	NA
>prophage 7
NZ_CP045927	Staphylococcus agnetis strain 1379 chromosome, complete genome	2449249	2426630	2433194	2449249		Staphylococcus_phage(50.0%)	7	NA	NA
WP_107368484.1|2426630_2427845_-	DNA cytosine methyltransferase	NA	V5URQ5	Oenococcus_phage	56.5	3.4e-125
WP_107368502.1|2428017_2429322_-	NgoFVII family restriction endonuclease	NA	V5US45	Oenococcus_phage	49.2	1.5e-110
WP_107368485.1|2429400_2429880_-	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA	NA
WP_107368486.1|2430276_2430675_-	arsenate reductase (thioredoxin)	NA	A0A2H4PQT9	Staphylococcus_phage	75.6	1.3e-54
WP_107368487.1|2430692_2431982_-	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	69.9	1.4e-161
WP_060552146.1|2431978_2432299_-	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	56.7	5.0e-28
WP_107368488.1|2432411_2433194_-	MBL fold metallo-hydrolase	NA	A0A0C5AJ83	Bacteriophage	37.6	6.9e-39
