The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP045458	Salmonella enterica subsp. enterica serovar Anatum strain M-3471 chromosome, complete genome	4641662	310358	319440	4641662	integrase,protease	Ralstonia_phage(16.67%)	8	299801:299813	322811:322823
299801:299813	attL	AATAAAAAGATCA	NA	NA	NA	NA
WP_024155556.1|310358_311600_-|integrase	site-specific integrase	integrase	A0A077KET4	Ralstonia_phage	40.7	2.5e-75
WP_023243338.1|312127_312505_+|integrase	phage integrase	integrase	NA	NA	NA	NA
WP_001117984.1|312666_312864_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000934064.1|313076_315353_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.3	6.2e-165
WP_000520789.1|315383_315704_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	45.7	4.5e-13
WP_000447499.1|316027_316249_+	cold shock-like protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.2	9.3e-18
WP_000125893.1|316378_318325_-	macrolide ABC transporter ATP-binding protein/permease MacB	NA	G9BWD6	Planktothrix_phage	42.3	9.1e-40
WP_023202044.1|318321_319440_-	macrolide transporter subunit MacA	NA	A0A140XAI1	Dickeya_phage	38.9	1.4e-08
322811:322823	attR	TGATCTTTTTATT	NA	NA	NA	NA
>prophage 2
NZ_CP045458	Salmonella enterica subsp. enterica serovar Anatum strain M-3471 chromosome, complete genome	4641662	1677587	1722365	4641662	tRNA,tail,plate	Burkholderia_phage(40.91%)	47	NA	NA
WP_001182228.1|1677587_1678586_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_023242904.1|1678673_1679984_-	conjugal transfer protein TraF	NA	NA	NA	NA	NA
WP_000416272.1|1680230_1680746_+	zinc uptake transcriptional repressor Zur	NA	NA	NA	NA	NA
WP_001030592.1|1680845_1681055_-	CsbD family protein	NA	NA	NA	NA	NA
WP_010989093.1|1681076_1681190_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001128113.1|1681186_1682512_-	MATE family efflux transporter DinF	NA	NA	NA	NA	NA
WP_000646079.1|1682690_1683299_-	repressor LexA	NA	Q9G0C2	Lactococcus_phage	38.0	1.0e-13
WP_000002900.1|1683407_1683776_-	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_000017360.1|1683946_1686367_+	glycerol-3-phosphate 1-O-acyltransferase PlsB	NA	NA	NA	NA	NA
WP_000455249.1|1686465_1687338_-	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA	NA
WP_000019219.1|1687351_1687849_-	chorismate lyase	NA	NA	NA	NA	NA
WP_001749156.1|1688029_1688947_-	maltose operon protein MalM	NA	NA	NA	NA	NA
WP_000973681.1|1689110_1690469_-	maltoporin	NA	NA	NA	NA	NA
WP_000179176.1|1690557_1691667_-	maltose/maltodextrin ABC transporter ATP-binding protein MalK	NA	Q6GZ03	Mycoplasma_phage	47.2	6.2e-17
WP_000695415.1|1692028_1693219_+	maltose/maltodextrin ABC transporter substrate-binding protein MalE	NA	NA	NA	NA	NA
WP_023242906.1|1693350_1694895_+	maltose ABC transporter permease MalF	NA	NA	NA	NA	NA
WP_020845801.1|1694909_1695800_+	maltose ABC transporter permease MalG	NA	NA	NA	NA	NA
WP_000982752.1|1695965_1696376_-	phosphate-starvation-inducible protein PsiE	NA	NA	NA	NA	NA
WP_000750805.1|1696518_1698615_-	YjbH domain-containing protein	NA	NA	NA	NA	NA
WP_000977959.1|1698614_1699352_-	capsule biosynthesis GfcC family protein	NA	NA	NA	NA	NA
WP_122821798.1|1699348_1700017_-	YjbF family lipoprotein	NA	NA	NA	NA	NA
WP_001541297.1|1700050_1700293_-	outer membrane protein	NA	NA	NA	NA	NA
WP_000790028.1|1700736_1702386_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_000136394.1|1702730_1704080_+	lysine-sensitive aspartokinase 3	NA	NA	NA	NA	NA
WP_000615248.1|1704210_1704558_-	DNA-binding protein	NA	Q6QIE8	Burkholderia_phage	51.5	4.9e-21
WP_001226440.1|1705133_1705421_+	membrane protein	NA	Q6QIC8	Burkholderia_phage	48.1	5.1e-16
WP_001270438.1|1705423_1706029_+	transglycosylase SLT domain-containing protein	NA	Q5ZQZ1	Pseudomonas_phage	60.4	6.5e-61
WP_000777266.1|1706041_1706356_+	membrane protein	NA	Q6QIC4	Burkholderia_phage	49.1	6.4e-20
WP_000449433.1|1706515_1706971_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023242908.1|1706967_1707165_+	hypothetical protein	NA	Q6QIB1	Burkholderia_phage	52.9	6.6e-07
WP_023242909.1|1707154_1708582_+|tail	phage tail sheath family protein	tail	A4JWK5	Burkholderia_virus	71.2	8.1e-195
WP_110962133.1|1708581_1709106_+|tail	phage major tail tube protein	tail	Q6QIA9	Burkholderia_phage	69.5	8.1e-68
WP_001003640.1|1709157_1709475_+|tail	phage tail assembly protein	tail	NA	NA	NA	NA
WP_001185654.1|1709434_1709563_+|tail	GpE family phage tail protein	tail	NA	NA	NA	NA
WP_023242910.1|1709659_1712014_+|tail	phage tail tape measure protein	tail	A4JWL0	Burkholderia_virus	30.6	3.1e-66
WP_023242911.1|1712013_1712967_+	methyl-accepting chemotaxis protein	NA	A4JWL1	Burkholderia_virus	51.5	7.9e-37
WP_001269716.1|1712966_1713176_+	membrane protein	NA	A4JWL2	Burkholderia_virus	60.3	9.8e-17
WP_023244444.1|1713163_1714207_+	phage late control D family protein	NA	Q6QIA2	Burkholderia_phage	45.1	4.2e-76
WP_000679393.1|1714216_1714939_+|plate	phage baseplate assembly protein V	plate	A0A067ZIM2	Vibrio_phage	42.0	3.9e-12
WP_000593182.1|1715266_1715629_+	GtrA family protein	NA	I1TED9	Salmonella_phage	70.8	1.2e-43
WP_000703633.1|1715625_1716555_+	glycosyltransferase family 2 protein	NA	S5FKN0	Shigella_phage	84.1	1.4e-150
WP_000632053.1|1716554_1718102_+	hypothetical protein	NA	B9UDL6	Salmonella_phage	29.9	3.8e-49
WP_001093501.1|1718265_1718625_+|plate	baseplate protein	plate	Q6QIA0	Burkholderia_phage	64.2	2.8e-35
WP_001749150.1|1718615_1719731_+	bacteriophage protein	NA	Q6QI99	Burkholderia_phage	52.0	4.1e-101
WP_001749149.1|1719723_1720356_+|tail	phage tail protein I	tail	Q6QI98	Burkholderia_phage	55.6	1.9e-23
WP_000368203.1|1720358_1721840_+|tail	tail fiber protein	tail	A0A0M3ULF6	Salmonella_phage	51.7	1.3e-51
WP_001177097.1|1721849_1722365_+|tail	tail fiber assembly protein	tail	A0A0U2QV64	Escherichia_phage	41.2	3.4e-34
>prophage 3
NZ_CP045458	Salmonella enterica subsp. enterica serovar Anatum strain M-3471 chromosome, complete genome	4641662	3199263	3205067	4641662		Enterobacteria_phage(100.0%)	8	NA	NA
WP_021000674.1|3199263_3201597_-	hypothetical protein	NA	Q7M2A8	Enterobacteria_phage	84.5	0.0e+00
WP_000743150.1|3201611_3201932_-	DUF5375 domain-containing protein	NA	NA	NA	NA	NA
WP_001604623.1|3201928_3202156_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023243884.1|3202152_3202704_-	ash family protein	NA	Q7M2A7	Enterobacteria_phage	71.3	8.6e-36
WP_001604627.1|3202700_3202967_-	AlpA family transcriptional regulator	NA	Q7M299	Enterobacteria_phage	70.5	1.7e-29
WP_024155472.1|3203504_3204242_+	hypothetical protein	NA	Q7M2A2	Enterobacteria_phage	64.0	8.4e-79
WP_000984211.1|3204238_3204484_+	transcriptional regulator	NA	Q7M294	Enterobacteria_phage	76.5	6.3e-31
WP_000210078.1|3204500_3205067_+	phage polarity suppression protein	NA	Q7M2A1	Enterobacteria_phage	62.7	7.7e-56
>prophage 4
NZ_CP045458	Salmonella enterica subsp. enterica serovar Anatum strain M-3471 chromosome, complete genome	4641662	3727943	3737114	4641662	tRNA	Enterobacteria_phage(66.67%)	10	NA	NA
WP_000569166.1|3727943_3728891_+	ABC transporter ATP-binding protein	NA	F2Y1V5	Organic_Lake_phycodnavirus	27.8	3.7e-10
WP_000824854.1|3728874_3729606_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_001261696.1|3729586_3729694_-	protein YohO	NA	NA	NA	NA	NA
WP_001240418.1|3729753_3730485_-	HTH-type transcriptional regulator MlrA	NA	Q9EYF2	Enterobacteria_phage	87.9	4.5e-101
WP_023243038.1|3730707_3732393_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	91.1	6.9e-278
WP_000598637.1|3732389_3733109_+	two-component system response regulator BtsR	NA	NA	NA	NA	NA
WP_000950413.1|3733155_3733623_+	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	90.3	3.9e-74
WP_001197951.1|3733679_3734210_-	YehR family lipoprotein	NA	NA	NA	NA	NA
WP_000703137.1|3734381_3734840_-	YehR family lipoprotein	NA	Q9EYF5	Enterobacteria_phage	72.5	8.4e-53
WP_000195332.1|3735080_3737114_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SDF2	Indivirus	27.6	1.0e-54
>prophage 5
NZ_CP045458	Salmonella enterica subsp. enterica serovar Anatum strain M-3471 chromosome, complete genome	4641662	3805206	3811503	4641662		Enterobacteria_phage(50.0%)	6	NA	NA
WP_023244537.1|3805206_3806610_+	colanic acid biosynthesis protein WcaM	NA	A0A291LBB9	Klebsiella_phage	26.5	3.1e-21
WP_000981469.1|3806787_3807681_+	GalU regulator GalF	NA	A0A127AW70	Bacillus_phage	42.2	4.8e-44
WP_000697846.1|3808057_3809143_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	53.9	1.6e-102
WP_001023662.1|3809142_3810042_+	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	36.3	1.4e-30
WP_023243995.1|3810089_3810968_+	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	64.1	2.3e-107
WP_001100808.1|3810972_3811503_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	57.1	4.8e-52
>prophage 6
NZ_CP045458	Salmonella enterica subsp. enterica serovar Anatum strain M-3471 chromosome, complete genome	4641662	3921751	3929000	4641662		Morganella_phage(33.33%)	8	NA	NA
WP_023243860.1|3921751_3922171_+	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A1W6JNS2	Morganella_phage	60.5	8.5e-36
WP_000457663.1|3922173_3923442_+	Y-family DNA polymerase	NA	I6RSM4	Salmonella_phage	91.9	9.3e-227
WP_000208509.1|3923896_3924109_+	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	70.0	3.9e-21
WP_024131163.1|3924119_3924308_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001080661.1|3924567_3925761_-	porin OmpS1	NA	Q1MVN1	Enterobacteria_phage	56.2	3.0e-110
WP_000107435.1|3926409_3926721_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023243859.1|3926800_3927496_+	phosphohydrolase	NA	A0A1D6Y7U0	Golden_Marseillevirus	27.1	2.8e-07
WP_023243858.1|3927569_3929000_+	DNA cytosine methyltransferase	NA	E5E3X6	Burkholderia_phage	57.4	1.0e-104
>prophage 7
NZ_CP045458	Salmonella enterica subsp. enterica serovar Anatum strain M-3471 chromosome, complete genome	4641662	4032268	4040031	4641662	integrase	Enterobacteria_phage(28.57%)	12	4034478:4034500	4046601:4046623
WP_000856224.1|4032268_4032499_-	DNA polymerase III subunit theta	NA	H9C187	Pectobacterium_phage	60.3	2.9e-14
WP_000168393.1|4032636_4033011_+	CopC domain-containing protein YobA	NA	NA	NA	NA	NA
WP_072101102.1|4033011_4033887_+	copper homeostasis membrane protein CopD	NA	NA	NA	NA	NA
WP_000722368.1|4033903_4034257_+	YebY family protein	NA	NA	NA	NA	NA
4034478:4034500	attL	GGAATCGTATTCGGTCTCTTTTT	NA	NA	NA	NA
WP_020438172.1|4034628_4035708_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	52.0	6.3e-99
WP_023244250.1|4035704_4036811_-	exodeoxyribonuclease 8	NA	Q9QF34	Lambdoid_phage	65.0	1.4e-53
WP_001013467.1|4036841_4037072_+	hypothetical protein	NA	Q8HA86	Salmonella_phage	93.7	6.1e-28
WP_001050883.1|4037125_4037659_+	DUF2514 domain-containing protein	NA	A0A291LBG9	Klebsiella_phage	43.0	5.4e-11
WP_000789530.1|4037915_4038083_-	lytic enzyme	NA	NA	NA	NA	NA
WP_001521334.1|4038147_4038336_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000348541.1|4038390_4038882_+	DUF1441 family protein	NA	Q9EYD0	Enterobacteria_phage	56.2	7.1e-42
WP_023244117.1|4039434_4040031_+	hypothetical protein	NA	Q1MVL8	Enterobacteria_phage	43.1	7.8e-35
4046601:4046623	attR	GGAATCGTATTCGGTCTCTTTTT	NA	NA	NA	NA
>prophage 1
NZ_CP045459	Salmonella enterica subsp. enterica serovar Anatum strain M-3471 plasmid pM-3471_DHA, complete sequence	89619	15132	50722	89619	transposase,integrase	Salmonella_phage(28.57%)	43	2812:2831	25513:25532
2812:2831	attL	ACTTTCACATGTGAAAGTTT	NA	NA	NA	NA
WP_000543934.1|15132_16143_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A0K0N6I5	Gordonia_phage	31.9	3.1e-07
WP_000949433.1|16145_16682_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000575657.1|16980_17262_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000278322.1|17523_18126_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000791469.1|18141_18594_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011872911.1|18760_19060_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000787563.1|19354_19627_-	MafI family immunity protein	NA	NA	NA	NA	NA
WP_001067855.1|20070_20775_+|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
WP_000936896.1|21290_22718_-	DNA cytosine methyltransferase	NA	NA	NA	NA	NA
WP_000647189.1|22721_23222_-	hypothetical protein	NA	I3UMJ0	Colwellia_phage	43.3	1.7e-19
WP_002210541.1|23230_23542_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005507681.1|23547_23979_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000344151.1|24046_24721_-	thymidylate kinase	NA	NA	NA	NA	NA
WP_014342216.1|24707_24827_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001125905.1|24969_25347_-	hypothetical protein	NA	A0A2H4P7P5	Pseudomonas_phage	49.6	2.2e-22
WP_000939033.1|25665_25809_+	hypothetical protein	NA	NA	NA	NA	NA
25513:25532	attR	ACTTTCACATGTGAAAGTTT	NA	NA	NA	NA
WP_000074431.1|25900_26536_+	N-6 DNA methylase	NA	NA	NA	NA	NA
WP_000703827.1|26588_26861_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_001207227.1|26909_28091_-	ParB/RepB/Spo0J family partition protein	NA	I3NLC2	Bifidobacterium_phage	28.7	2.4e-11
WP_001151304.1|28094_28880_-	ParA family protein	NA	A0A1X9IGI7	Lactococcus_phage	26.4	6.1e-11
WP_014342215.1|28907_29039_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000338945.1|29053_29365_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001043260.1|29671_30487_+	sulfonamide-resistant dihydropteroate synthase Sul2	NA	A0A0B5J4J5	Pandoravirus	27.6	5.9e-09
WP_001082319.1|30547_31351_+	aminoglycoside O-phosphotransferase APH(3'')-Ib	NA	NA	NA	NA	NA
WP_000480968.1|31350_32187_+	aminoglycoside O-phosphotransferase APH(6)-Id	NA	NA	NA	NA	NA
WP_000844627.1|32492_32735_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_000164043.1|32766_33417_-	tetracycline resistance transcriptional repressor TetR(A)	NA	NA	NA	NA	NA
WP_000804063.1|33522_34722_+	tetracycline efflux MFS transporter Tet(A)	NA	NA	NA	NA	NA
WP_001255015.1|34988_35294_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023300759.1|35321_36536_-	chloramphenicol/florfenicol efflux MFS transporter FloR	NA	S4TR35	Salmonella_phage	28.7	5.5e-19
WP_021598067.1|36752_37637_-	DUF3363 domain-containing protein	NA	NA	NA	NA	NA
WP_001120888.1|37667_39161_-|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
WP_000743213.1|39371_39596_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001366550.1|39592_40330_-	recombinase family protein	NA	NA	NA	NA	NA
WP_001067855.1|40442_41147_-|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
WP_001162012.1|41730_42288_+	recombinase family protein	NA	A0A1B0V7I5	Salmonella_phage	81.3	5.8e-48
WP_001138073.1|42290_45263_+|transposase	Tn3 family transposase	transposase	A0A1B0V7H9	Salmonella_phage	73.1	0.0e+00
WP_110962188.1|45341_46346_+|transposase	IS110-like element IS4321 family transposase	transposase	NA	NA	NA	NA
WP_042849136.1|47081_47429_+	hypothetical protein	NA	A0A1V0SB21	Catovirus	39.4	2.6e-06
WP_001143450.1|47428_47989_+	trimethoprim-resistant dihydrofolate reductase DfrA23	NA	A0A076FMI9	Aureococcus_anophage	29.0	1.6e-05
WP_001274976.1|47969_48416_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000256638.1|48441_49059_+	hypothetical protein	NA	G3BM17	Salmonella_phage	28.3	2.3e-05
WP_000050481.1|49180_50722_-|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
