assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_011464375.1_ASM1146437v1	NZ_CP041708	Mycoplasma capricolum subsp. capripneumoniae strain 438LP chromosome, complete genome	1	248802-248910	1	CRISPRCasFinder	no		DEDDh	Orphan	AAGGAATTTCTGTGTATTTACACACTTTTTCCTTA	35	0	0	NA	NA	NA	1	1	Orphan	DEDDh	NA|233aa|up_8|NZ_CP041708.1_220372_221071_+,NA|179aa|up_4|NZ_CP041708.1_232129_232666_+,NA|122aa|down_3|NZ_CP041708.1_253827_254193_-,NA|55aa|down_4|NZ_CP041708.1_254407_254572_-,NA|166aa|down_5|NZ_CP041708.1_254707_255205_-,NA|104aa|down_6|NZ_CP041708.1_255502_255814_-,NA|127aa|down_7|NZ_CP041708.1_256494_256875_+,NA|273aa|down_8|NZ_CP041708.1_256837_257656_-,NA|85aa|down_9|NZ_CP041708.1_257730_257985_-	NA|64aa|up_9|NZ_CP041708.1_220233_220425_+	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285	NA|233aa|up_8|NZ_CP041708.1_220372_221071_+	NA	NA|294aa|up_7|NZ_CP041708.1_222957_223839_+	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily	NA|547aa|up_6|NZ_CP041708.1_223872_225513_-	TIGR03490, Uncharacterized_lipoprotein_lpp, mycoides cluster lipoprotein, LppA/P72 family	NA|600aa|up_5|NZ_CP041708.1_226250_228050_-	cd11338, AmyAc_CMD, Alpha amylase catalytic domain found in cyclomaltodextrinases and related proteins	NA|179aa|up_4|NZ_CP041708.1_232129_232666_+	NA	NA|598aa|up_3|NZ_CP041708.1_243532_245326_-	TIGR00181, Oligoendopeptidase_F_homolog, oligoendopeptidase F	NA|228aa|up_2|NZ_CP041708.1_245325_246009_-	cd17495, RMtype1_S_Cep9333ORF4827P-TRD2-CR2_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to Crinalium epipsammum S subunit (S	NA|452aa|up_1|NZ_CP041708.1_246025_247381_-	pfam00883, Peptidase_M17, Cytosol aminopeptidase family, catalytic domain	NA|432aa|up_0|NZ_CP041708.1_247496_248792_-	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|207aa|down_0|NZ_CP041708.1_249034_249655_+	COG2059, ChrA, Chromate transport protein ChrA [Inorganic ion transport and metabolism]	NA|226aa|down_1|NZ_CP041708.1_249654_250332_+	pfam02417, Chromate_transp, Chromate transporter	NA|306aa|down_2|NZ_CP041708.1_252696_253614_-	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|122aa|down_3|NZ_CP041708.1_253827_254193_-	NA	NA|55aa|down_4|NZ_CP041708.1_254407_254572_-	NA	NA|166aa|down_5|NZ_CP041708.1_254707_255205_-	NA	NA|104aa|down_6|NZ_CP041708.1_255502_255814_-	NA	NA|127aa|down_7|NZ_CP041708.1_256494_256875_+	NA	NA|273aa|down_8|NZ_CP041708.1_256837_257656_-	NA	NA|85aa|down_9|NZ_CP041708.1_257730_257985_-	NA
GCF_011464375.1_ASM1146437v1	NZ_CP041708	Mycoplasma capricolum subsp. capripneumoniae strain 438LP chromosome, complete genome	2	746941-747081	2	CRISPRCasFinder	no		DEDDh	Orphan	GGTTGTGGTAGATTAGTGGTAGAAATATGGTAGATTAGAATATAAA	46	0	0	NA	NA	NA	1	1	Orphan	DEDDh	NA|478aa|up_4|NZ_CP041708.1_736960_738394_-,NA|418aa|up_1|NZ_CP041708.1_740917_742171_-,NA|58aa|down_0|NZ_CP041708.1_748125_748299_-,NA|318aa|down_3|NZ_CP041708.1_752840_753794_+	NA|353aa|up_9|NZ_CP041708.1_726253_727312_-	pfam00004, AAA, ATPase family associated with various cellular activities (AAA)	NA|192aa|up_8|NZ_CP041708.1_728495_729071_-	cd17933, DEXSc_RecD-like, DEXS-box helicase domain of RecD and similar proteins	NA|282aa|up_7|NZ_CP041708.1_732246_733092_-	cd00947, TBP_aldolase_IIB, Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases	NA|245aa|up_6|NZ_CP041708.1_733295_734030_+	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]	NA|314aa|up_5|NZ_CP041708.1_735938_736880_+	cd01164, FruK_PfkB_like, 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases	NA|478aa|up_4|NZ_CP041708.1_736960_738394_-	NA	NA|316aa|up_3|NZ_CP041708.1_739460_740408_-	COG0507, RecD, ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member [DNA replication, recombination, and repair]	NA|171aa|up_2|NZ_CP041708.1_740373_740886_-	cd17934, DEXXQc_Upf1-like, DEXXQ-box helicase domain of Upf1-like helicase	NA|418aa|up_1|NZ_CP041708.1_740917_742171_-	NA	NA|471aa|up_0|NZ_CP041708.1_745464_746877_-	COG2865, COG2865, Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription]	NA|58aa|down_0|NZ_CP041708.1_748125_748299_-	NA	NA|485aa|down_1|NZ_CP041708.1_749138_750593_+	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285	NA|614aa|down_2|NZ_CP041708.1_750927_752769_+	COG0595, COG0595, mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]	NA|318aa|down_3|NZ_CP041708.1_752840_753794_+	NA	NA|222aa|down_4|NZ_CP041708.1_759864_760530_+	COG1704, LemA, Uncharacterized conserved protein [Function unknown]	NA|53aa|down_5|NZ_CP041708.1_761168_761327_+	TIGR04547, putative_liporotein, MOLPALP family lipoprotein	NA|405aa|down_6|NZ_CP041708.1_761937_763152_-	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|339aa|down_7|NZ_CP041708.1_763280_764297_-	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|312aa|down_8|NZ_CP041708.1_764389_765325_-	PRK08939, PRK08939, primosomal protein DnaI; Reviewed	NA|395aa|down_9|NZ_CP041708.1_765334_766519_-	COG3611, DnaB, Replication initiation/membrane attachment protein [DNA replication, recombination, and repair]
GCF_011464375.1_ASM1146437v1	NZ_CP041708	Mycoplasma capricolum subsp. capripneumoniae strain 438LP chromosome, complete genome	3	896009-896183	3	CRISPRCasFinder	no		DEDDh	Orphan	AATCAAGATTTATCAAAATGAGAT	24	0	0	NA	NA	NA	2	2	Orphan	DEDDh	NA,NA	NA|225aa|up_9|NZ_CP041708.1_877840_878515_-	PRK00507, PRK00507, deoxyribose-phosphate aldolase; Provisional	NA|561aa|up_8|NZ_CP041708.1_878526_880209_-	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1)	NA|438aa|up_7|NZ_CP041708.1_880373_881687_+	TIGR02644, Thymidine_phosphorylase, pyrimidine-nucleoside phosphorylase	NA|468aa|up_6|NZ_CP041708.1_884547_885951_+	COG2239, MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]	NA|221aa|up_5|NZ_CP041708.1_885952_886615_+	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed	NA|245aa|up_4|NZ_CP041708.1_887731_888466_-	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285	NA|184aa|up_3|NZ_CP041708.1_890680_891232_-	COG0634, Hpt, Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]	NA|433aa|up_2|NZ_CP041708.1_891254_892553_-	cd01360, Adenylsuccinate_lyase_1, Adenylsuccinate lyase (ASL)_subgroup 1	NA|433aa|up_1|NZ_CP041708.1_892545_893844_-	PRK01117, PRK01117, adenylosuccinate synthetase; Provisional	NA|267aa|up_0|NZ_CP041708.1_894128_894929_-	cd01310, TatD_DNAse, TatD like proteins;  E	NA|490aa|down_0|NZ_CP041708.1_896838_898308_-	TIGR03752, conj_TIGR03752, integrating conjugative element protein, PFL_4705 family	NA|317aa|down_1|NZ_CP041708.1_898310_899261_-	COG1466, HolA, DNA polymerase III, delta subunit [DNA replication, recombination, and repair]	NA|666aa|down_2|NZ_CP041708.1_899546_901544_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|947aa|down_3|NZ_CP041708.1_901552_904393_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|370aa|down_4|NZ_CP041708.1_904385_905495_+	COG0285, FolC, Folylpolyglutamate synthase [Coenzyme metabolism]	NA|225aa|down_5|NZ_CP041708.1_905522_906197_+	TIGR04518, conserved_hypothetical_protein, ECF transporter S component, folate family	NA|527aa|down_6|NZ_CP041708.1_907231_908812_+	COG0682, Lgt, Prolipoprotein diacylglyceryltransferase [Cell envelope biogenesis, outer membrane]	NA|311aa|down_7|NZ_CP041708.1_908795_909728_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|477aa|down_8|NZ_CP041708.1_909736_911167_+	pfam01790, LGT, Prolipoprotein diacylglyceryl transferase	NA|310aa|down_9|NZ_CP041708.1_911178_912108_+	COG1481, COG1481, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_011464375.1_ASM1146437v1	NZ_CP041708	Mycoplasma capricolum subsp. capripneumoniae strain 438LP chromosome, complete genome	4	896321-896569	4	CRISPRCasFinder	no		DEDDh	Orphan	AATCAAGATTTATCAAAATGAGAT	24	0	0	NA	NA	NA	3	3	Orphan	DEDDh	NA,NA	NA|225aa|up_9|NZ_CP041708.1_877840_878515_-	PRK00507, PRK00507, deoxyribose-phosphate aldolase; Provisional	NA|561aa|up_8|NZ_CP041708.1_878526_880209_-	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1)	NA|438aa|up_7|NZ_CP041708.1_880373_881687_+	TIGR02644, Thymidine_phosphorylase, pyrimidine-nucleoside phosphorylase	NA|468aa|up_6|NZ_CP041708.1_884547_885951_+	COG2239, MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]	NA|221aa|up_5|NZ_CP041708.1_885952_886615_+	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed	NA|245aa|up_4|NZ_CP041708.1_887731_888466_-	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285	NA|184aa|up_3|NZ_CP041708.1_890680_891232_-	COG0634, Hpt, Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]	NA|433aa|up_2|NZ_CP041708.1_891254_892553_-	cd01360, Adenylsuccinate_lyase_1, Adenylsuccinate lyase (ASL)_subgroup 1	NA|433aa|up_1|NZ_CP041708.1_892545_893844_-	PRK01117, PRK01117, adenylosuccinate synthetase; Provisional	NA|267aa|up_0|NZ_CP041708.1_894128_894929_-	cd01310, TatD_DNAse, TatD like proteins;  E	NA|490aa|down_0|NZ_CP041708.1_896838_898308_-	TIGR03752, conj_TIGR03752, integrating conjugative element protein, PFL_4705 family	NA|317aa|down_1|NZ_CP041708.1_898310_899261_-	COG1466, HolA, DNA polymerase III, delta subunit [DNA replication, recombination, and repair]	NA|666aa|down_2|NZ_CP041708.1_899546_901544_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|947aa|down_3|NZ_CP041708.1_901552_904393_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|370aa|down_4|NZ_CP041708.1_904385_905495_+	COG0285, FolC, Folylpolyglutamate synthase [Coenzyme metabolism]	NA|225aa|down_5|NZ_CP041708.1_905522_906197_+	TIGR04518, conserved_hypothetical_protein, ECF transporter S component, folate family	NA|527aa|down_6|NZ_CP041708.1_907231_908812_+	COG0682, Lgt, Prolipoprotein diacylglyceryltransferase [Cell envelope biogenesis, outer membrane]	NA|311aa|down_7|NZ_CP041708.1_908795_909728_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|477aa|down_8|NZ_CP041708.1_909736_911167_+	pfam01790, LGT, Prolipoprotein diacylglyceryl transferase	NA|310aa|down_9|NZ_CP041708.1_911178_912108_+	COG1481, COG1481, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_011464375.1_ASM1146437v1	NZ_CP041708	Mycoplasma capricolum subsp. capripneumoniae strain 438LP chromosome, complete genome	5	979720-979821	5	CRISPRCasFinder	no		DEDDh	Orphan	AATCAAAATATAAATAATTCAAAT	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh	NA|97aa|up_0|NZ_CP041708.1_979096_979387_-,NA|61aa|down_1|NZ_CP041708.1_981605_981788_+,NA|327aa|down_7|NZ_CP041708.1_989449_990430_-,NA|192aa|down_9|NZ_CP041708.1_994897_995473_+	NA|610aa|up_9|NZ_CP041708.1_964432_966262_-	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]	NA|281aa|up_8|NZ_CP041708.1_972073_972916_+	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily	NA|103aa|up_7|NZ_CP041708.1_972927_973236_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|501aa|up_6|NZ_CP041708.1_973348_974851_-	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed	NA|325aa|up_5|NZ_CP041708.1_974853_975828_-	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|105aa|up_4|NZ_CP041708.1_975829_976144_-	pfam08921, DUF1904, Domain of unknown function (DUF1904)	NA|423aa|up_3|NZ_CP041708.1_976249_977518_-	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|276aa|up_2|NZ_CP041708.1_977598_978426_-	COG2364, COG2364, Predicted membrane protein [Function unknown]	NA|195aa|up_1|NZ_CP041708.1_978493_979078_-	TIGR04522, EcfS_MSC_0063, putative energy coupling factor transporter S component, MSC_0063 family	NA|97aa|up_0|NZ_CP041708.1_979096_979387_-	NA	NA|166aa|down_0|NZ_CP041708.1_980533_981031_+	smart00460, TGc, Transglutaminase/protease-like homologues	NA|61aa|down_1|NZ_CP041708.1_981605_981788_+	NA	NA|150aa|down_2|NZ_CP041708.1_983682_984132_+	cd03017, PRX_BCP, Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of  thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides	NA|697aa|down_3|NZ_CP041708.1_984280_986371_+	pfam01732, DUF31, Putative peptidase (DUF31)	NA|302aa|down_4|NZ_CP041708.1_987107_988013_+	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|150aa|down_5|NZ_CP041708.1_988066_988516_+	pfam13518, HTH_28, Helix-turn-helix domain	NA|218aa|down_6|NZ_CP041708.1_988563_989217_-	cd09006, PNP_EcPNPI-like, purine nucleoside phosphorylases similar to Escherichia coli PNP-I (DeoD) and Trichomonas vaginalis PNP	NA|327aa|down_7|NZ_CP041708.1_989449_990430_-	NA	NA|312aa|down_8|NZ_CP041708.1_991283_992219_+	cd01164, FruK_PfkB_like, 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases	NA|192aa|down_9|NZ_CP041708.1_994897_995473_+	NA
