assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_011464035.1_ASM1146403v1	NZ_CP041704	Mycoplasma capricolum subsp. capripneumoniae strain Bagamoyo chromosome, complete genome	1	249342-249450	1	CRISPRCasFinder	no		DEDDh	Orphan	AAGGAATTTCTGTGTATTTACACACTTTTTCCTTA	35	0	0	NA	NA	NA	1	1	Orphan	DEDDh	NA|233aa|up_8|NZ_CP041704.1_220920_221619_+,NA|175aa|up_4|NZ_CP041704.1_232677_233202_+,NA|122aa|down_4|NZ_CP041704.1_254368_254734_-,NA|65aa|down_5|NZ_CP041704.1_254917_255112_-,NA|146aa|down_6|NZ_CP041704.1_255308_255746_-,NA|104aa|down_7|NZ_CP041704.1_256043_256355_-,NA|127aa|down_8|NZ_CP041704.1_257035_257416_+,NA|383aa|down_9|NZ_CP041704.1_257378_258527_-	NA|64aa|up_9|NZ_CP041704.1_220781_220973_+	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285	NA|233aa|up_8|NZ_CP041704.1_220920_221619_+	NA	NA|294aa|up_7|NZ_CP041704.1_223505_224387_+	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily	NA|547aa|up_6|NZ_CP041704.1_224420_226061_-	TIGR03490, Uncharacterized_lipoprotein_lpp, mycoides cluster lipoprotein, LppA/P72 family	NA|600aa|up_5|NZ_CP041704.1_226798_228598_-	cd11338, AmyAc_CMD, Alpha amylase catalytic domain found in cyclomaltodextrinases and related proteins	NA|175aa|up_4|NZ_CP041704.1_232677_233202_+	NA	NA|598aa|up_3|NZ_CP041704.1_244072_245866_-	TIGR00181, Oligoendopeptidase_F_homolog, oligoendopeptidase F	NA|228aa|up_2|NZ_CP041704.1_245865_246549_-	cd17495, RMtype1_S_Cep9333ORF4827P-TRD2-CR2_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to Crinalium epipsammum S subunit (S	NA|452aa|up_1|NZ_CP041704.1_246565_247921_-	pfam00883, Peptidase_M17, Cytosol aminopeptidase family, catalytic domain	NA|432aa|up_0|NZ_CP041704.1_248036_249332_-	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|207aa|down_0|NZ_CP041704.1_249574_250195_+	COG2059, ChrA, Chromate transport protein ChrA [Inorganic ion transport and metabolism]	NA|226aa|down_1|NZ_CP041704.1_250194_250872_+	pfam02417, Chromate_transp, Chromate transporter	NA|127aa|down_2|NZ_CP041704.1_251139_251520_+	pfam07751, Abi_2, Abi-like protein	NA|306aa|down_3|NZ_CP041704.1_253237_254155_-	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|122aa|down_4|NZ_CP041704.1_254368_254734_-	NA	NA|65aa|down_5|NZ_CP041704.1_254917_255112_-	NA	NA|146aa|down_6|NZ_CP041704.1_255308_255746_-	NA	NA|104aa|down_7|NZ_CP041704.1_256043_256355_-	NA	NA|127aa|down_8|NZ_CP041704.1_257035_257416_+	NA	NA|383aa|down_9|NZ_CP041704.1_257378_258527_-	NA
GCF_011464035.1_ASM1146403v1	NZ_CP041704	Mycoplasma capricolum subsp. capripneumoniae strain Bagamoyo chromosome, complete genome	2	358458-358644	1	PILER-CR	no		DEDDh	Orphan	ACCAACCCATTGGTAACTGAGATACTTCAAATGTAACTGATATGCGTTGTAT	52	1	1	358510-358532	NZ_CP041704.1_436814-436836	NA	2	2	Orphan	DEDDh	NA|46aa|up_8|NZ_CP041704.1_352249_352387_+,NA|216aa|up_7|NZ_CP041704.1_352404_353052_+,NA|202aa|up_5|NZ_CP041704.1_353539_354145_+,NA|86aa|up_4|NZ_CP041704.1_354572_354830_+,NA|71aa|up_2|NZ_CP041704.1_355891_356104_+,NA|64aa|up_1|NZ_CP041704.1_357634_357826_+,NA|94aa|up_0|NZ_CP041704.1_357915_358197_+,NA|62aa|down_0|NZ_CP041704.1_359922_360108_+,NA|204aa|down_1|NZ_CP041704.1_361174_361786_+,NA|138aa|down_2|NZ_CP041704.1_361836_362250_+,NA|126aa|down_8|NZ_CP041704.1_366933_367311_+,NA|182aa|down_9|NZ_CP041704.1_367389_367935_+	NA|151aa|up_9|NZ_CP041704.1_351748_352201_+	cd04496, SSB_OBF, SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB)	NA|46aa|up_8|NZ_CP041704.1_352249_352387_+	NA	NA|216aa|up_7|NZ_CP041704.1_352404_353052_+	NA	NA|128aa|up_6|NZ_CP041704.1_353077_353461_+	pfam01719, Rep_2, Plasmid replication protein	NA|202aa|up_5|NZ_CP041704.1_353539_354145_+	NA	NA|86aa|up_4|NZ_CP041704.1_354572_354830_+	NA	NA|246aa|up_3|NZ_CP041704.1_355154_355892_+	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|71aa|up_2|NZ_CP041704.1_355891_356104_+	NA	NA|64aa|up_1|NZ_CP041704.1_357634_357826_+	NA	NA|94aa|up_0|NZ_CP041704.1_357915_358197_+	NA	NA|62aa|down_0|NZ_CP041704.1_359922_360108_+	NA	NA|204aa|down_1|NZ_CP041704.1_361174_361786_+	NA	NA|138aa|down_2|NZ_CP041704.1_361836_362250_+	NA	NA|183aa|down_3|NZ_CP041704.1_362817_363366_+	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285	NA|272aa|down_4|NZ_CP041704.1_363419_364235_+	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285	NA|268aa|down_5|NZ_CP041704.1_364289_365093_+	TIGR00635, Holliday_junction_ATP-dependent_DNA_helicase_RuvB, Holliday junction DNA helicase, RuvB subunit	NA|223aa|down_6|NZ_CP041704.1_365093_365762_+	pfam02086, MethyltransfD12, D12 class N6 adenine-specific DNA methyltransferase	NA|157aa|down_7|NZ_CP041704.1_366251_366722_+	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285	NA|126aa|down_8|NZ_CP041704.1_366933_367311_+	NA	NA|182aa|down_9|NZ_CP041704.1_367389_367935_+	NA
GCF_011464035.1_ASM1146403v1	NZ_CP041704	Mycoplasma capricolum subsp. capripneumoniae strain Bagamoyo chromosome, complete genome	3	747610-747750	2	CRISPRCasFinder	no		DEDDh	Orphan	GGTTGTGGTAGATTAGTGGTAGAAATATGGTAGATTAGAATATAAA	46	0	0	NA	NA	NA	1	1	Orphan	DEDDh	NA|478aa|up_5|NZ_CP041704.1_737630_739064_-,NA|190aa|up_2|NZ_CP041704.1_741587_742157_-,NA|155aa|up_1|NZ_CP041704.1_742375_742840_-,NA|58aa|down_0|NZ_CP041704.1_748794_748968_-,NA|318aa|down_3|NZ_CP041704.1_753509_754463_+	NA|431aa|up_9|NZ_CP041704.1_729165_730458_-	cd17933, DEXSc_RecD-like, DEXS-box helicase domain of RecD and similar proteins	NA|282aa|up_8|NZ_CP041704.1_732916_733762_-	cd00947, TBP_aldolase_IIB, Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases	NA|245aa|up_7|NZ_CP041704.1_733965_734700_+	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]	NA|314aa|up_6|NZ_CP041704.1_736608_737550_+	cd01164, FruK_PfkB_like, 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases	NA|478aa|up_5|NZ_CP041704.1_737630_739064_-	NA	NA|316aa|up_4|NZ_CP041704.1_740130_741078_-	COG0507, RecD, ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member [DNA replication, recombination, and repair]	NA|171aa|up_3|NZ_CP041704.1_741043_741556_-	cd17934, DEXXQc_Upf1-like, DEXXQ-box helicase domain of Upf1-like helicase	NA|190aa|up_2|NZ_CP041704.1_741587_742157_-	NA	NA|155aa|up_1|NZ_CP041704.1_742375_742840_-	NA	NA|471aa|up_0|NZ_CP041704.1_746133_747546_-	COG2865, COG2865, Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription]	NA|58aa|down_0|NZ_CP041704.1_748794_748968_-	NA	NA|485aa|down_1|NZ_CP041704.1_749807_751262_+	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285	NA|614aa|down_2|NZ_CP041704.1_751596_753438_+	COG0595, COG0595, mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]	NA|318aa|down_3|NZ_CP041704.1_753509_754463_+	NA	NA|222aa|down_4|NZ_CP041704.1_760534_761200_+	COG1704, LemA, Uncharacterized conserved protein [Function unknown]	NA|405aa|down_5|NZ_CP041704.1_762335_763550_-	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|339aa|down_6|NZ_CP041704.1_763678_764695_-	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|312aa|down_7|NZ_CP041704.1_764787_765723_-	PRK08939, PRK08939, primosomal protein DnaI; Reviewed	NA|395aa|down_8|NZ_CP041704.1_765732_766917_-	COG3611, DnaB, Replication initiation/membrane attachment protein [DNA replication, recombination, and repair]	NA|275aa|down_9|NZ_CP041704.1_767074_767899_-	PRK01103, PRK01103, bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase
GCF_011464035.1_ASM1146403v1	NZ_CP041704	Mycoplasma capricolum subsp. capripneumoniae strain Bagamoyo chromosome, complete genome	4	896410-896584	3	CRISPRCasFinder	no		DEDDh	Orphan	AATCAAGATTTATCAAAATGAGAT	24	0	0	NA	NA	NA	2	2	Orphan	DEDDh	NA,NA	NA|223aa|up_9|NZ_CP041704.1_878253_878922_-	PRK00507, PRK00507, deoxyribose-phosphate aldolase; Provisional	NA|561aa|up_8|NZ_CP041704.1_878933_880616_-	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1)	NA|438aa|up_7|NZ_CP041704.1_880780_882094_+	TIGR02644, Thymidine_phosphorylase, pyrimidine-nucleoside phosphorylase	NA|468aa|up_6|NZ_CP041704.1_884955_886359_+	COG2239, MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]	NA|221aa|up_5|NZ_CP041704.1_886360_887023_+	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed	NA|245aa|up_4|NZ_CP041704.1_888138_888873_-	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285	NA|184aa|up_3|NZ_CP041704.1_891087_891639_-	COG0634, Hpt, Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]	NA|433aa|up_2|NZ_CP041704.1_891661_892960_-	cd01360, Adenylsuccinate_lyase_1, Adenylsuccinate lyase (ASL)_subgroup 1	NA|433aa|up_1|NZ_CP041704.1_892952_894251_-	PRK01117, PRK01117, adenylosuccinate synthetase; Provisional	NA|267aa|up_0|NZ_CP041704.1_894535_895336_-	cd01310, TatD_DNAse, TatD like proteins;  E	NA|490aa|down_0|NZ_CP041704.1_897240_898710_-	TIGR03752, conj_TIGR03752, integrating conjugative element protein, PFL_4705 family	NA|317aa|down_1|NZ_CP041704.1_898712_899663_-	COG1466, HolA, DNA polymerase III, delta subunit [DNA replication, recombination, and repair]	NA|666aa|down_2|NZ_CP041704.1_899948_901946_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|947aa|down_3|NZ_CP041704.1_901954_904795_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|370aa|down_4|NZ_CP041704.1_904787_905897_+	COG0285, FolC, Folylpolyglutamate synthase [Coenzyme metabolism]	NA|225aa|down_5|NZ_CP041704.1_905924_906599_+	TIGR04518, conserved_hypothetical_protein, ECF transporter S component, folate family	NA|527aa|down_6|NZ_CP041704.1_907633_909214_+	COG0682, Lgt, Prolipoprotein diacylglyceryltransferase [Cell envelope biogenesis, outer membrane]	NA|311aa|down_7|NZ_CP041704.1_909197_910130_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|477aa|down_8|NZ_CP041704.1_910138_911569_+	pfam01790, LGT, Prolipoprotein diacylglyceryl transferase	NA|310aa|down_9|NZ_CP041704.1_911580_912510_+	COG1481, COG1481, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_011464035.1_ASM1146403v1	NZ_CP041704	Mycoplasma capricolum subsp. capripneumoniae strain Bagamoyo chromosome, complete genome	5	896722-896970	4	CRISPRCasFinder	no		DEDDh	Orphan	AATCAAGATTTATCAAAATGAGAT	24	0	0	NA	NA	NA	3	3	Orphan	DEDDh	NA,NA	NA|223aa|up_9|NZ_CP041704.1_878253_878922_-	PRK00507, PRK00507, deoxyribose-phosphate aldolase; Provisional	NA|561aa|up_8|NZ_CP041704.1_878933_880616_-	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1)	NA|438aa|up_7|NZ_CP041704.1_880780_882094_+	TIGR02644, Thymidine_phosphorylase, pyrimidine-nucleoside phosphorylase	NA|468aa|up_6|NZ_CP041704.1_884955_886359_+	COG2239, MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]	NA|221aa|up_5|NZ_CP041704.1_886360_887023_+	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed	NA|245aa|up_4|NZ_CP041704.1_888138_888873_-	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285	NA|184aa|up_3|NZ_CP041704.1_891087_891639_-	COG0634, Hpt, Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]	NA|433aa|up_2|NZ_CP041704.1_891661_892960_-	cd01360, Adenylsuccinate_lyase_1, Adenylsuccinate lyase (ASL)_subgroup 1	NA|433aa|up_1|NZ_CP041704.1_892952_894251_-	PRK01117, PRK01117, adenylosuccinate synthetase; Provisional	NA|267aa|up_0|NZ_CP041704.1_894535_895336_-	cd01310, TatD_DNAse, TatD like proteins;  E	NA|490aa|down_0|NZ_CP041704.1_897240_898710_-	TIGR03752, conj_TIGR03752, integrating conjugative element protein, PFL_4705 family	NA|317aa|down_1|NZ_CP041704.1_898712_899663_-	COG1466, HolA, DNA polymerase III, delta subunit [DNA replication, recombination, and repair]	NA|666aa|down_2|NZ_CP041704.1_899948_901946_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|947aa|down_3|NZ_CP041704.1_901954_904795_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|370aa|down_4|NZ_CP041704.1_904787_905897_+	COG0285, FolC, Folylpolyglutamate synthase [Coenzyme metabolism]	NA|225aa|down_5|NZ_CP041704.1_905924_906599_+	TIGR04518, conserved_hypothetical_protein, ECF transporter S component, folate family	NA|527aa|down_6|NZ_CP041704.1_907633_909214_+	COG0682, Lgt, Prolipoprotein diacylglyceryltransferase [Cell envelope biogenesis, outer membrane]	NA|311aa|down_7|NZ_CP041704.1_909197_910130_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|477aa|down_8|NZ_CP041704.1_910138_911569_+	pfam01790, LGT, Prolipoprotein diacylglyceryl transferase	NA|310aa|down_9|NZ_CP041704.1_911580_912510_+	COG1481, COG1481, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_011464035.1_ASM1146403v1	NZ_CP041704	Mycoplasma capricolum subsp. capripneumoniae strain Bagamoyo chromosome, complete genome	6	980120-980221	5	CRISPRCasFinder	no		DEDDh	Orphan	AATCAAAATATAAATAATTCAAAT	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh	NA|97aa|up_0|NZ_CP041704.1_979496_979787_-,NA|61aa|down_1|NZ_CP041704.1_982005_982188_+,NA|327aa|down_8|NZ_CP041704.1_989848_990829_-	NA|610aa|up_9|NZ_CP041704.1_964832_966662_-	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]	NA|281aa|up_8|NZ_CP041704.1_972473_973316_+	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily	NA|103aa|up_7|NZ_CP041704.1_973327_973636_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|501aa|up_6|NZ_CP041704.1_973748_975251_-	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed	NA|325aa|up_5|NZ_CP041704.1_975253_976228_-	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|105aa|up_4|NZ_CP041704.1_976229_976544_-	pfam08921, DUF1904, Domain of unknown function (DUF1904)	NA|423aa|up_3|NZ_CP041704.1_976649_977918_-	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|276aa|up_2|NZ_CP041704.1_977998_978826_-	COG2364, COG2364, Predicted membrane protein [Function unknown]	NA|195aa|up_1|NZ_CP041704.1_978893_979478_-	TIGR04522, EcfS_MSC_0063, putative energy coupling factor transporter S component, MSC_0063 family	NA|97aa|up_0|NZ_CP041704.1_979496_979787_-	NA	NA|166aa|down_0|NZ_CP041704.1_980933_981431_+	smart00460, TGc, Transglutaminase/protease-like homologues	NA|61aa|down_1|NZ_CP041704.1_982005_982188_+	NA	NA|581aa|down_2|NZ_CP041704.1_982231_983974_-	TIGR02002, PTS_system_glucose-specific_IIABC_component, PTS system, glucose-specific IIBC component	NA|150aa|down_3|NZ_CP041704.1_984081_984531_+	cd03017, PRX_BCP, Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of  thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides	NA|697aa|down_4|NZ_CP041704.1_984679_986770_+	pfam01732, DUF31, Putative peptidase (DUF31)	NA|302aa|down_5|NZ_CP041704.1_987506_988412_+	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|150aa|down_6|NZ_CP041704.1_988465_988915_+	pfam13518, HTH_28, Helix-turn-helix domain	NA|218aa|down_7|NZ_CP041704.1_988962_989616_-	cd09006, PNP_EcPNPI-like, purine nucleoside phosphorylases similar to Escherichia coli PNP-I (DeoD) and Trichomonas vaginalis PNP	NA|327aa|down_8|NZ_CP041704.1_989848_990829_-	NA	NA|312aa|down_9|NZ_CP041704.1_991681_992617_+	cd01164, FruK_PfkB_like, 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases
