assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_011404755.1_ASM1140475v1	NZ_AP021895	Escherichia coli strain 2018-11-3CC	1	991679-992195	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no		cas3,csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Orphan	GTGTTCCCCGCGCCAGCGGGGATAAACC,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	28,29,29	0	0	NA	NA	I-E:I-E:I-E	8,8,8	8	Orphan	cas3,csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	NA|47aa|up_1|NZ_AP021895.1_990389_990530_-,NA	NA|919aa|up_9|NZ_AP021895.1_978273_981030_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|434aa|up_8|NZ_AP021895.1_981086_982388_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_7|NZ_AP021895.1_982435_984670_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_6|NZ_AP021895.1_984747_984996_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_5|NZ_AP021895.1_984995_985331_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_4|NZ_AP021895.1_985401_986193_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_3|NZ_AP021895.1_986420_988058_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_2|NZ_AP021895.1_988145_989444_+	PRK00077, eno, enolase; Provisional	NA|47aa|up_1|NZ_AP021895.1_990389_990530_-	NA	NA|224aa|up_0|NZ_AP021895.1_990668_991340_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|371aa|down_0|NZ_AP021895.1_992250_993363_+	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|493aa|down_1|NZ_AP021895.1_994182_995661_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_2|NZ_AP021895.1_995687_996965_-	cd06174, MFS, Major Facilitator Superfamily	NA|485aa|down_3|NZ_AP021895.1_998137_999592_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|470aa|down_4|NZ_AP021895.1_999613_1001023_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|NZ_AP021895.1_1001000_1001780_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_6|NZ_AP021895.1_1001776_1002637_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_7|NZ_AP021895.1_1002784_1003360_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_8|NZ_AP021895.1_1003376_1003637_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_9|NZ_AP021895.1_1003627_1004899_-	PRK10015, PRK10015, oxidoreductase; Provisional
GCF_011404755.1_ASM1140475v1	NZ_AP021895	Escherichia coli strain 2018-11-3CC	2	1020595-1021050	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	6,6,7	7	TypeI-E	cas3,csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	NA,NA	NA|571aa|up_9|NZ_AP021895.1_1007456_1009169_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_8|NZ_AP021895.1_1009243_1009978_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|51aa|up_7|NZ_AP021895.1_1010242_1010395_+	pfam01848, HOK_GEF, Hok/gef family	cas8e|521aa|up_6|NZ_AP021895.1_1014736_1016299_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|179aa|up_5|NZ_AP021895.1_1016295_1016832_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas7|352aa|up_4|NZ_AP021895.1_1016843_1017899_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|NZ_AP021895.1_1017909_1018656_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|NZ_AP021895.1_1018637_1019288_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|308aa|up_1|NZ_AP021895.1_1019284_1020208_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_AP021895.1_1020204_1020498_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NZ_AP021895.1_1021070_1022108_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_AP021895.1_1022359_1023268_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_AP021895.1_1023269_1024697_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_AP021895.1_1024696_1025302_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_AP021895.1_1025351_1025675_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_AP021895.1_1025868_1026180_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_AP021895.1_1026198_1026909_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_AP021895.1_1026908_1027388_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_AP021895.1_1027384_1028434_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_AP021895.1_1028414_1029176_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_011404755.1_ASM1140475v1	NZ_AP021895	Escherichia coli strain 2018-11-3CC	3	1507827-1507944	3	CRISPRCasFinder	no		cas3,csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Orphan	CCGAGCCGTAGGCCGGATAAGGCGTTCACGC	31	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	NA,NA	NA|62aa|up_9|NZ_AP021895.1_1497112_1497298_-	PRK09956, PRK09956, ISNCY family transposase	NA|300aa|up_8|NZ_AP021895.1_1497310_1498210_-	PRK09956, PRK09956, ISNCY family transposase	NA|397aa|up_7|NZ_AP021895.1_1498402_1499593_-	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|420aa|up_6|NZ_AP021895.1_1499589_1500849_-	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|543aa|up_5|NZ_AP021895.1_1500838_1502467_-	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|453aa|up_4|NZ_AP021895.1_1502739_1504098_+	PRK11273, glpT, glycerol-3-phosphate transporter	NA|359aa|up_3|NZ_AP021895.1_1504102_1505179_+	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|217aa|up_2|NZ_AP021895.1_1505641_1506292_+	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|85aa|up_1|NZ_AP021895.1_1506345_1506600_-	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|377aa|up_0|NZ_AP021895.1_1506599_1507730_-	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|762aa|down_0|NZ_AP021895.1_1507963_1510249_-	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|1251aa|down_1|NZ_AP021895.1_1510944_1514697_+	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|241aa|down_2|NZ_AP021895.1_1514824_1515547_-	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|876aa|down_3|NZ_AP021895.1_1515693_1518321_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|563aa|down_4|NZ_AP021895.1_1518469_1520158_+	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|208aa|down_5|NZ_AP021895.1_1520154_1520778_+	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|550aa|down_6|NZ_AP021895.1_1525316_1526966_+	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|252aa|down_7|NZ_AP021895.1_1526990_1527746_+	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|441aa|down_8|NZ_AP021895.1_1529811_1531134_-	pfam02667, SCFA_trans, Short chain fatty acid transporter	NA|217aa|down_9|NZ_AP021895.1_1531130_1531781_-	TIGR02428, 3-oxoadipate_CoA-transferase_subunit_B, 3-oxoacid CoA-transferase, B subunit
GCF_011404755.1_ASM1140475v1	NZ_AP021895	Escherichia coli strain 2018-11-3CC	4	2111473-2111596	4	CRISPRCasFinder	no	DEDDh	cas3,csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	NA,NA|30aa|down_7|NZ_AP021895.1_2120492_2120582_+	NA|471aa|up_9|NZ_AP021895.1_2100927_2102340_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_AP021895.1_2102896_2103106_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_AP021895.1_2103560_2104187_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_AP021895.1_2104207_2106310_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|213aa|up_5|NZ_AP021895.1_2106322_2106961_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_AP021895.1_2107024_2107693_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_AP021895.1_2107689_2108475_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_AP021895.1_2108478_2109291_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_AP021895.1_2109302_2110907_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_AP021895.1_2111032_2111338_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_AP021895.1_2111910_2113167_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_AP021895.1_2113207_2114581_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_AP021895.1_2114795_2115437_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_AP021895.1_2115476_2116625_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_AP021895.1_2116915_2118127_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_AP021895.1_2118239_2119172_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_AP021895.1_2119168_2120194_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_AP021895.1_2120492_2120582_+	NA	NA|390aa|down_8|NZ_AP021895.1_2120747_2121917_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_AP021895.1_2122151_2122733_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_011404755.1_ASM1140475v1	NZ_AP021895	Escherichia coli strain 2018-11-3CC	5	2743244-2743335	5	CRISPRCasFinder	no		cas3,csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	NA|70aa|up_9|NZ_AP021895.1_2732319_2732529_-,NA	NA|70aa|up_9|NZ_AP021895.1_2732319_2732529_-	NA	NA|1321aa|up_8|NZ_AP021895.1_2732583_2736546_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_AP021895.1_2736585_2737224_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_AP021895.1_2737511_2738603_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_AP021895.1_2738602_2739295_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_AP021895.1_2739306_2739693_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_AP021895.1_2739700_2740501_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_AP021895.1_2740510_2741101_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_AP021895.1_2741111_2741606_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_AP021895.1_2741626_2742955_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_AP021895.1_2743758_2744355_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_AP021895.1_2744375_2744603_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_AP021895.1_2744640_2745882_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|307aa|down_3|NZ_AP021895.1_2747690_2748611_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_4|NZ_AP021895.1_2748610_2748916_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_5|NZ_AP021895.1_2749067_2749667_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_6|NZ_AP021895.1_2749663_2752210_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_7|NZ_AP021895.1_2752209_2753382_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_8|NZ_AP021895.1_2753511_2754204_+	PRK10766, PRK10766, two-component system response regulator TorR	NA|343aa|down_9|NZ_AP021895.1_2754176_2755205_-	PRK10936, PRK10936, TMAO reductase system periplasmic protein TorT; Provisional
GCF_011404755.1_ASM1140475v1	NZ_AP021895	Escherichia coli strain 2018-11-3CC	6	2882367-2882572	6,3,3	CRISPRCasFinder,CRT,PILER-CR	no		cas3,csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Orphan	TTTCTAAGCTGCCTGTACGGCAGTGAAC,TTTCTAAGCTGCCTGTACGGCAGTGAAC,TTTCTAAGCTGCCTGTACGGCAGTGAACG	28,28,29	0	0	NA	NA	I-F:I-F:I-F	3,3,2	3	Orphan	cas3,csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	NA,NA	NA|431aa|up_9|NZ_AP021895.1_2867490_2868783_-	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|448aa|up_8|NZ_AP021895.1_2868873_2870217_-	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|204aa|up_7|NZ_AP021895.1_2870227_2870839_-	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|1330aa|up_6|NZ_AP021895.1_2870993_2874983_-	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|165aa|up_5|NZ_AP021895.1_2875117_2875612_-	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|322aa|up_4|NZ_AP021895.1_2876156_2877122_+	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|589aa|up_3|NZ_AP021895.1_2877244_2879011_+	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|574aa|up_2|NZ_AP021895.1_2879011_2880733_+	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|235aa|up_1|NZ_AP021895.1_2880774_2881479_+	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|73aa|up_0|NZ_AP021895.1_2881763_2881982_+	PRK00276, infA, translation initiation factor IF-1; Validated	NA|759aa|down_0|NZ_AP021895.1_2882782_2885059_-	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|107aa|down_1|NZ_AP021895.1_2885089_2885410_-	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|75aa|down_2|NZ_AP021895.1_2885732_2885957_+	PRK09937, PRK09937, cold shock-like protein CspD	NA|649aa|down_3|NZ_AP021895.1_2886029_2887976_-	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|372aa|down_4|NZ_AP021895.1_2887972_2889088_-	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|319aa|down_5|NZ_AP021895.1_2889238_2890195_+	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|553aa|down_6|NZ_AP021895.1_2890191_2891850_-	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|232aa|down_7|NZ_AP021895.1_2892274_2892970_+	PRK05420, PRK05420, aquaporin Z; Provisional	NA|300aa|down_8|NZ_AP021895.1_2893464_2894364_+	COG2431, COG2431, Predicted membrane protein [Function unknown]	NA|551aa|down_9|NZ_AP021895.1_2894507_2896160_+	PRK05290, PRK05290, hybrid cluster protein; Provisional
GCF_011404755.1_ASM1140475v1	NZ_AP021895	Escherichia coli strain 2018-11-3CC	7	3086626-3086770	7	CRISPRCasFinder	no		cas3,csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Orphan	GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	52	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	NA|94aa|up_6|NZ_AP021895.1_3082011_3082293_+,NA|201aa|up_4|NZ_AP021895.1_3082823_3083426_-,NA|56aa|up_3|NZ_AP021895.1_3083668_3083836_+,NA	NA|227aa|up_9|NZ_AP021895.1_3080977_3081658_+	pfam09588, YqaJ, YqaJ-like viral recombinase domain	NA|61aa|up_8|NZ_AP021895.1_3081654_3081837_+	pfam07026, DUF1317, Protein of unknown function (DUF1317)	NA|64aa|up_7|NZ_AP021895.1_3081809_3082001_+	pfam07131, DUF1382, Protein of unknown function (DUF1382)	NA|94aa|up_6|NZ_AP021895.1_3082011_3082293_+	NA	NA|74aa|up_5|NZ_AP021895.1_3082391_3082613_+	PHA00080, PHA00080, DksA-like zinc finger domain containing protein	NA|201aa|up_4|NZ_AP021895.1_3082823_3083426_-	NA	NA|56aa|up_3|NZ_AP021895.1_3083668_3083836_+	NA	NA|73aa|up_2|NZ_AP021895.1_3083875_3084094_+	pfam07825, Exc, Excisionase-like protein	NA|357aa|up_1|NZ_AP021895.1_3084071_3085142_+	cd00800, INT_Lambda_C, C-terminal catalytic domain of Lambda integrase, a tyrosine-based site-specific recombinase	NA|428aa|up_0|NZ_AP021895.1_3085276_3086560_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|754aa|down_0|NZ_AP021895.1_3086793_3089055_-	PRK11413, PRK11413, putative hydratase; Provisional	NA|332aa|down_1|NZ_AP021895.1_3091168_3092164_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|273aa|down_2|NZ_AP021895.1_3092318_3093137_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|353aa|down_3|NZ_AP021895.1_3093137_3094196_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|230aa|down_4|NZ_AP021895.1_3094198_3094888_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|258aa|down_5|NZ_AP021895.1_3094887_3095661_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|50aa|down_6|NZ_AP021895.1_3095827_3095977_-	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ	NA|263aa|down_7|NZ_AP021895.1_3096105_3096894_+	PRK10676, PRK10676, DNA-binding transcriptional regulator ModE; Provisional	NA|491aa|down_8|NZ_AP021895.1_3096961_3098434_+	PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional	NA|339aa|down_9|NZ_AP021895.1_3098694_3099711_+	PRK10675, PRK10675, UDP-galactose-4-epimerase; Provisional
GCF_011404755.1_ASM1140475v1	NZ_AP021895	Escherichia coli strain 2018-11-3CC	8	3320426-3320522	8	CRISPRCasFinder	no		cas3,csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Orphan	TTGTAGGCCTGATAAGATGCGTCAAGC	27	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	NA,NA	NA|231aa|up_9|NZ_AP021895.1_3312221_3312914_-	PRK15195, PRK15195, molecular chaperone FimC	NA|181aa|up_8|NZ_AP021895.1_3313133_3313676_-	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|289aa|up_7|NZ_AP021895.1_3314146_3315013_+	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|71aa|up_6|NZ_AP021895.1_3315014_3315227_+	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|174aa|up_5|NZ_AP021895.1_3315334_3315856_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|462aa|up_4|NZ_AP021895.1_3315891_3317277_-	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|165aa|up_3|NZ_AP021895.1_3317450_3317945_+	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|241aa|up_2|NZ_AP021895.1_3317947_3318670_+	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|170aa|up_1|NZ_AP021895.1_3318787_3319297_+	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|356aa|up_0|NZ_AP021895.1_3319293_3320361_+	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|298aa|down_0|NZ_AP021895.1_3320555_3321449_-	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|272aa|down_1|NZ_AP021895.1_3321445_3322261_-	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|420aa|down_2|NZ_AP021895.1_3322271_3323531_-	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|556aa|down_3|NZ_AP021895.1_3323540_3325208_-	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|350aa|down_4|NZ_AP021895.1_3325524_3326574_+	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|262aa|down_5|NZ_AP021895.1_3327841_3328627_+	COG3257, GlxB, Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]	NA|382aa|down_6|NZ_AP021895.1_3328854_3330000_-	PRK09932, PRK09932, glycerate 3-kinase	NA|434aa|down_7|NZ_AP021895.1_3330021_3331323_-	PRK11412, PRK11412, uracil/xanthine transporter	NA|454aa|down_8|NZ_AP021895.1_3331379_3332741_-	PRK08044, PRK08044, allantoinase AllB	NA|485aa|down_9|NZ_AP021895.1_3332800_3334255_-	PRK11375, PRK11375, putative allantoin permease
GCF_011404755.1_ASM1140475v1	NZ_AP021895	Escherichia coli strain 2018-11-3CC	9	3456078-3456222	9	CRISPRCasFinder	no		cas3,csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Orphan	TTTTGCAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCAT	43	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	NA,NA|28aa|down_2|NZ_AP021895.1_3458267_3458351_-	NA|357aa|up_9|NZ_AP021895.1_3441216_3442287_-	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional	NA|194aa|up_8|NZ_AP021895.1_3442379_3442961_+	PRK10045, PRK10045, ACP phosphodiesterase	NA|606aa|up_7|NZ_AP021895.1_3442965_3444783_-	PRK10785, PRK10785, maltodextrin glucosidase; Provisional	NA|458aa|up_6|NZ_AP021895.1_3444938_3446312_-	PRK10580, proY, putative proline-specific permease; Provisional	NA|440aa|up_5|NZ_AP021895.1_3446387_3447707_-	PRK15433, PRK15433, branched-chain amino acid transporter carrier protein BrnQ	NA|432aa|up_4|NZ_AP021895.1_3448113_3449409_-	PRK11006, phoR, phosphate regulon sensor histidine kinase PhoR	NA|230aa|up_3|NZ_AP021895.1_3449466_3450156_-	PRK10161, PRK10161, phosphate response regulator transcription factor PhoB	NA|401aa|up_2|NZ_AP021895.1_3450345_3451548_+	PRK10966, PRK10966, exonuclease subunit SbcD; Provisional	NA|1049aa|up_1|NZ_AP021895.1_3451544_3454691_+	PRK10246, PRK10246, exonuclease subunit SbcC; Provisional	NA|395aa|up_0|NZ_AP021895.1_3454816_3456001_+	PRK10091, PRK10091, MFS transport protein AraJ; Provisional	NA|303aa|down_0|NZ_AP021895.1_3456245_3457154_-	PRK09557, PRK09557, fructokinase; Reviewed	NA|304aa|down_1|NZ_AP021895.1_3457278_3458190_+	PRK00321, rdgC, recombination associated protein; Reviewed	NA|28aa|down_2|NZ_AP021895.1_3458267_3458351_-	NA	NA|95aa|down_3|NZ_AP021895.1_3458836_3459121_-	PRK10579, PRK10579, pyrimidine/purine nucleoside phosphorylase	NA|226aa|down_4|NZ_AP021895.1_3459192_3459870_-	PRK10481, PRK10481, hypothetical protein; Provisional	NA|64aa|down_5|NZ_AP021895.1_3460127_3460319_-	PRK10380, PRK10380, hypothetical protein; Provisional	NA|175aa|down_6|NZ_AP021895.1_3460368_3460893_-	PRK03731, aroL, shikimate kinase AroL	NA|155aa|down_7|NZ_AP021895.1_3461069_3461534_-	PRK00124, PRK00124, YaiI/YqxD family protein	NA|270aa|down_8|NZ_AP021895.1_3461653_3462463_+	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed	NA|372aa|down_9|NZ_AP021895.1_3462479_3463595_-	PRK10245, adrA, diguanylate cyclase AdrA; Provisional
GCF_011404755.1_ASM1140475v1	NZ_AP021895	Escherichia coli strain 2018-11-3CC	10	3813019-3813154	4	PILER-CR	no		cas3,csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Orphan	TGAATCACCAATATTGAAAA	20	0	0	NA	NA	NA	2	2	Orphan	cas3,csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	NA,NA	NA|126aa|up_9|NZ_AP021895.1_3803725_3804103_+	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed	NA|281aa|up_8|NZ_AP021895.1_3804109_3804952_+	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical)	NA|160aa|up_7|NZ_AP021895.1_3805029_3805509_-	PRK10769, folA, type 3 dihydrofolate reductase	NA|621aa|up_6|NZ_AP021895.1_3805700_3807563_-	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|177aa|up_5|NZ_AP021895.1_3807555_3808086_-	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF	NA|444aa|up_4|NZ_AP021895.1_3808193_3809525_-	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|96aa|up_3|NZ_AP021895.1_3809583_3809871_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_2|NZ_AP021895.1_3809867_3811154_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_1|NZ_AP021895.1_3811204_3812146_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_0|NZ_AP021895.1_3812160_3812931_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|down_0|NZ_AP021895.1_3813403_3814918_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|down_1|NZ_AP021895.1_3814948_3816091_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|down_2|NZ_AP021895.1_3816219_3817437_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|518aa|down_3|NZ_AP021895.1_3817510_3819064_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|down_4|NZ_AP021895.1_3819172_3819958_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|down_5|NZ_AP021895.1_3819963_3820554_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_6|NZ_AP021895.1_3820672_3821068_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|1074aa|down_7|NZ_AP021895.1_3821329_3824551_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_8|NZ_AP021895.1_3824568_3825717_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|274aa|down_9|NZ_AP021895.1_3826172_3826994_-	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]
