assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_011404215.1_ASM1140421v1	NZ_AP021891	Escherichia coli strain 2017.01.04CC	1	954977-955493	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,WYL,RT	Orphan	GTGTTCCCCGCGCCAGCGGGGATAAACC,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	28,29,29	0	0	NA	NA	I-E:I-E:I-E	8,8,8	8	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,WYL,RT	NA|47aa|up_1|NZ_AP021891.1_953686_953827_-,NA|43aa|down_3|NZ_AP021891.1_960087_960216_+	NA|919aa|up_9|NZ_AP021891.1_941570_944327_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|434aa|up_8|NZ_AP021891.1_944383_945685_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_7|NZ_AP021891.1_945732_947967_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_6|NZ_AP021891.1_948044_948293_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_5|NZ_AP021891.1_948292_948628_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_4|NZ_AP021891.1_948698_949490_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_3|NZ_AP021891.1_949717_951355_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_2|NZ_AP021891.1_951442_952741_+	PRK00077, eno, enolase; Provisional	NA|47aa|up_1|NZ_AP021891.1_953686_953827_-	NA	NA|224aa|up_0|NZ_AP021891.1_953965_954637_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|NZ_AP021891.1_956131_957610_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|NZ_AP021891.1_957636_958914_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|NZ_AP021891.1_959232_960018_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|43aa|down_3|NZ_AP021891.1_960087_960216_+	NA	NA|438aa|down_4|NZ_AP021891.1_961005_962319_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|470aa|down_5|NZ_AP021891.1_962340_963750_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_6|NZ_AP021891.1_963727_964507_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_7|NZ_AP021891.1_964503_965364_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_8|NZ_AP021891.1_965511_966087_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_9|NZ_AP021891.1_966103_966364_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]
GCF_011404215.1_ASM1140421v1	NZ_AP021891	Escherichia coli strain 2017.01.04CC	2	983319-983473	2,2	PILER-CR,CRISPRCasFinder	no	cas3,cas8e,cse2gr11,cas5,cas6e,cas1,cas2	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,WYL,RT	Type I-E	GTGTGTTCCCCGCGCCAGCGGGGATAAACCGGG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	33,29	0	0	NA	NA	I-E:I-E	2,2	2	TypeI-E	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,WYL,RT	NA,NA	NA|245aa|up_9|NZ_AP021891.1_971970_972705_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|51aa|up_8|NZ_AP021891.1_972969_973122_+	pfam01848, HOK_GEF, Hok/gef family	NA|371aa|up_7|NZ_AP021891.1_973314_974427_-	pfam01609, DDE_Tnp_1, Transposase DDE domain	cas3|900aa|up_6|NZ_AP021891.1_974665_977365_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|521aa|up_5|NZ_AP021891.1_977462_979025_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|179aa|up_4|NZ_AP021891.1_979021_979558_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas5|249aa|up_3|NZ_AP021891.1_980635_981382_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|NZ_AP021891.1_981363_982014_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|308aa|up_1|NZ_AP021891.1_982010_982934_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_AP021891.1_982930_983224_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NZ_AP021891.1_983552_984590_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_AP021891.1_984841_985750_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_AP021891.1_985751_987179_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_AP021891.1_987178_987784_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|104aa|down_4|NZ_AP021891.1_988349_988661_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_5|NZ_AP021891.1_988679_989390_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_6|NZ_AP021891.1_989389_989869_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_7|NZ_AP021891.1_989865_990915_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_8|NZ_AP021891.1_990895_991657_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|209aa|down_9|NZ_AP021891.1_991650_992277_+	PRK00312, pcm, protein-L-isoaspartate(D-aspartate) O-methyltransferase
GCF_011404215.1_ASM1140421v1	NZ_AP021891	Escherichia coli strain 2017.01.04CC	3	1506425-1506542	3	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,WYL,RT	Orphan	CCGAGCCGTAGGCCGGATAAGGCGTTCACGC	31	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,WYL,RT	NA,NA	NA|62aa|up_9|NZ_AP021891.1_1495710_1495896_-	PRK09956, PRK09956, ISNCY family transposase	NA|300aa|up_8|NZ_AP021891.1_1495908_1496808_-	PRK09956, PRK09956, ISNCY family transposase	NA|397aa|up_7|NZ_AP021891.1_1497000_1498191_-	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|420aa|up_6|NZ_AP021891.1_1498187_1499447_-	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|543aa|up_5|NZ_AP021891.1_1499436_1501065_-	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|453aa|up_4|NZ_AP021891.1_1501337_1502696_+	PRK11273, glpT, glycerol-3-phosphate transporter	NA|359aa|up_3|NZ_AP021891.1_1502700_1503777_+	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|217aa|up_2|NZ_AP021891.1_1504239_1504890_+	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|85aa|up_1|NZ_AP021891.1_1504943_1505198_-	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|377aa|up_0|NZ_AP021891.1_1505197_1506328_-	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|762aa|down_0|NZ_AP021891.1_1506561_1508847_-	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|1251aa|down_1|NZ_AP021891.1_1509542_1513295_+	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|241aa|down_2|NZ_AP021891.1_1513422_1514145_-	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|876aa|down_3|NZ_AP021891.1_1514291_1516919_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|563aa|down_4|NZ_AP021891.1_1517067_1518756_+	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|324aa|down_5|NZ_AP021891.1_1519443_1520415_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|1465aa|down_6|NZ_AP021891.1_1520591_1524986_+	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|550aa|down_7|NZ_AP021891.1_1524986_1526636_+	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|252aa|down_8|NZ_AP021891.1_1526660_1527416_+	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|395aa|down_9|NZ_AP021891.1_1527489_1528674_-	PRK05790, PRK05790, putative acyltransferase; Provisional
GCF_011404215.1_ASM1140421v1	NZ_AP021891	Escherichia coli strain 2017.01.04CC	4	2111716-2111839	4	CRISPRCasFinder	no	DEDDh	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,WYL,RT	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,WYL,RT	NA,NA|30aa|down_7|NZ_AP021891.1_2120735_2120825_+	NA|471aa|up_9|NZ_AP021891.1_2101170_2102583_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_AP021891.1_2103139_2103349_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_AP021891.1_2103803_2104430_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_AP021891.1_2104450_2106553_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|213aa|up_5|NZ_AP021891.1_2106565_2107204_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_AP021891.1_2107267_2107936_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_AP021891.1_2107932_2108718_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_AP021891.1_2108721_2109534_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_AP021891.1_2109545_2111150_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_AP021891.1_2111275_2111581_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_AP021891.1_2112153_2113410_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_AP021891.1_2113450_2114824_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_AP021891.1_2115038_2115680_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_AP021891.1_2115719_2116868_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_AP021891.1_2117158_2118370_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_AP021891.1_2118482_2119415_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_AP021891.1_2119411_2120437_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_AP021891.1_2120735_2120825_+	NA	NA|390aa|down_8|NZ_AP021891.1_2120990_2122160_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_AP021891.1_2122394_2122976_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_011404215.1_ASM1140421v1	NZ_AP021891	Escherichia coli strain 2017.01.04CC	5	2817771-2817862	5	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,WYL,RT	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,WYL,RT	NA|70aa|up_9|NZ_AP021891.1_2806846_2807056_-,NA	NA|70aa|up_9|NZ_AP021891.1_2806846_2807056_-	NA	NA|1321aa|up_8|NZ_AP021891.1_2807110_2811073_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_AP021891.1_2811112_2811751_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_AP021891.1_2812038_2813130_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_AP021891.1_2813129_2813822_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_AP021891.1_2813833_2814220_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_AP021891.1_2814227_2815028_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_AP021891.1_2815037_2815628_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_AP021891.1_2815638_2816133_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_AP021891.1_2816153_2817482_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_AP021891.1_2818285_2818882_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_AP021891.1_2818902_2819130_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_AP021891.1_2819167_2820409_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|307aa|down_3|NZ_AP021891.1_2822994_2823915_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_4|NZ_AP021891.1_2823914_2824220_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_5|NZ_AP021891.1_2824371_2824971_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_6|NZ_AP021891.1_2824967_2827514_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_7|NZ_AP021891.1_2827513_2828686_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_8|NZ_AP021891.1_2828815_2829508_+	PRK10766, PRK10766, two-component system response regulator TorR	NA|343aa|down_9|NZ_AP021891.1_2829480_2830509_-	PRK10936, PRK10936, TMAO reductase system periplasmic protein TorT; Provisional
GCF_011404215.1_ASM1140421v1	NZ_AP021891	Escherichia coli strain 2017.01.04CC	6	2963538-2963681	6,3	CRISPRCasFinder,PILER-CR	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,WYL,RT	Orphan	TTTCTAAGCTGCCTGTACGGCAGTGAAC,TGTGAATTTCTAAGCTGCCTGTACGGCAGTGAAC	28,34	0	0	NA	NA	I-F:I-F	2,2	2	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,WYL,RT	NA,NA	NA|431aa|up_9|NZ_AP021891.1_2948661_2949954_-	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|448aa|up_8|NZ_AP021891.1_2950044_2951388_-	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|204aa|up_7|NZ_AP021891.1_2951398_2952010_-	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|1330aa|up_6|NZ_AP021891.1_2952164_2956154_-	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|165aa|up_5|NZ_AP021891.1_2956288_2956783_-	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|322aa|up_4|NZ_AP021891.1_2957327_2958293_+	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|589aa|up_3|NZ_AP021891.1_2958415_2960182_+	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|574aa|up_2|NZ_AP021891.1_2960182_2961904_+	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|235aa|up_1|NZ_AP021891.1_2961945_2962650_+	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|73aa|up_0|NZ_AP021891.1_2962934_2963153_+	PRK00276, infA, translation initiation factor IF-1; Validated	NA|759aa|down_0|NZ_AP021891.1_2963892_2966169_-	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|107aa|down_1|NZ_AP021891.1_2966199_2966520_-	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|75aa|down_2|NZ_AP021891.1_2966842_2967067_+	PRK09937, PRK09937, cold shock-like protein CspD	NA|649aa|down_3|NZ_AP021891.1_2967139_2969086_-	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|372aa|down_4|NZ_AP021891.1_2969082_2970198_-	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|319aa|down_5|NZ_AP021891.1_2970348_2971305_+	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|553aa|down_6|NZ_AP021891.1_2971301_2972960_-	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|232aa|down_7|NZ_AP021891.1_2973384_2974080_+	PRK05420, PRK05420, aquaporin Z; Provisional	NA|300aa|down_8|NZ_AP021891.1_2974574_2975474_+	COG2431, COG2431, Predicted membrane protein [Function unknown]	NA|551aa|down_9|NZ_AP021891.1_2975617_2977270_+	PRK05290, PRK05290, hybrid cluster protein; Provisional
GCF_011404215.1_ASM1140421v1	NZ_AP021891	Escherichia coli strain 2017.01.04CC	7	3084673-3084817	7	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,WYL,RT	Orphan	GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	52	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,WYL,RT	NA,NA	NA|330aa|up_9|NZ_AP021891.1_3072571_3073561_-	PRK00164, moaA, GTP 3',8-cyclase MoaA	NA|303aa|up_8|NZ_AP021891.1_3073957_3074866_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|674aa|up_7|NZ_AP021891.1_3075057_3077079_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|226aa|up_6|NZ_AP021891.1_3077657_3078335_-	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD	NA|252aa|up_5|NZ_AP021891.1_3078327_3079083_-	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional	NA|385aa|up_4|NZ_AP021891.1_3079069_3080224_-	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed	NA|347aa|up_3|NZ_AP021891.1_3080220_3081261_-	PRK15108, PRK15108, biotin synthase; Provisional	NA|430aa|up_2|NZ_AP021891.1_3081347_3082637_+	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated	NA|159aa|up_1|NZ_AP021891.1_3082695_3083172_+	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional	NA|428aa|up_0|NZ_AP021891.1_3083323_3084607_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|754aa|down_0|NZ_AP021891.1_3084840_3087102_-	PRK11413, PRK11413, putative hydratase; Provisional	NA|478aa|down_1|NZ_AP021891.1_3087284_3088718_-	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|351aa|down_2|NZ_AP021891.1_3088793_3089846_-	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|318aa|down_3|NZ_AP021891.1_3090029_3090983_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|332aa|down_4|NZ_AP021891.1_3091023_3092019_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|273aa|down_5|NZ_AP021891.1_3092173_3092992_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|353aa|down_6|NZ_AP021891.1_3092992_3094051_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|230aa|down_7|NZ_AP021891.1_3094053_3094743_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|258aa|down_8|NZ_AP021891.1_3094742_3095516_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|50aa|down_9|NZ_AP021891.1_3095682_3095832_-	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ
GCF_011404215.1_ASM1140421v1	NZ_AP021891	Escherichia coli strain 2017.01.04CC	8	3316366-3316462	8	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,WYL,RT	Orphan	TTGTAGGCCTGATAAGATGCGTCAAGC	27	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,WYL,RT	NA,NA	NA|231aa|up_9|NZ_AP021891.1_3308161_3308854_-	PRK15195, PRK15195, molecular chaperone FimC	NA|181aa|up_8|NZ_AP021891.1_3309073_3309616_-	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|289aa|up_7|NZ_AP021891.1_3310086_3310953_+	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|71aa|up_6|NZ_AP021891.1_3310954_3311167_+	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|174aa|up_5|NZ_AP021891.1_3311274_3311796_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|462aa|up_4|NZ_AP021891.1_3311831_3313217_-	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|165aa|up_3|NZ_AP021891.1_3313390_3313885_+	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|241aa|up_2|NZ_AP021891.1_3313887_3314610_+	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|170aa|up_1|NZ_AP021891.1_3314727_3315237_+	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|356aa|up_0|NZ_AP021891.1_3315233_3316301_+	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|298aa|down_0|NZ_AP021891.1_3316495_3317389_-	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|272aa|down_1|NZ_AP021891.1_3317385_3318201_-	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|420aa|down_2|NZ_AP021891.1_3318211_3319471_-	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|556aa|down_3|NZ_AP021891.1_3319480_3321148_-	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|349aa|down_4|NZ_AP021891.1_3321464_3322511_+	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|412aa|down_5|NZ_AP021891.1_3322532_3323768_+	TIGR03176, AllC, allantoate amidohydrolase	NA|262aa|down_6|NZ_AP021891.1_3323778_3324564_+	COG3257, GlxB, Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]	NA|382aa|down_7|NZ_AP021891.1_3324791_3325937_-	PRK09932, PRK09932, glycerate 3-kinase	NA|434aa|down_8|NZ_AP021891.1_3325958_3327260_-	PRK11412, PRK11412, uracil/xanthine transporter	NA|454aa|down_9|NZ_AP021891.1_3327316_3328678_-	PRK08044, PRK08044, allantoinase AllB
GCF_011404215.1_ASM1140421v1	NZ_AP021891	Escherichia coli strain 2017.01.04CC	9	3459601-3459745	9	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,WYL,RT	Orphan	TTTTGCAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCAT	43	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,WYL,RT	NA,NA|28aa|down_2|NZ_AP021891.1_3461790_3461874_-	NA|357aa|up_9|NZ_AP021891.1_3444739_3445810_-	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional	NA|194aa|up_8|NZ_AP021891.1_3445902_3446484_+	PRK10045, PRK10045, ACP phosphodiesterase	NA|606aa|up_7|NZ_AP021891.1_3446488_3448306_-	PRK10785, PRK10785, maltodextrin glucosidase; Provisional	NA|458aa|up_6|NZ_AP021891.1_3448461_3449835_-	PRK10580, proY, putative proline-specific permease; Provisional	NA|440aa|up_5|NZ_AP021891.1_3449910_3451230_-	PRK15433, PRK15433, branched-chain amino acid transporter carrier protein BrnQ	NA|432aa|up_4|NZ_AP021891.1_3451636_3452932_-	PRK11006, phoR, phosphate regulon sensor histidine kinase PhoR	NA|230aa|up_3|NZ_AP021891.1_3452989_3453679_-	PRK10161, PRK10161, phosphate response regulator transcription factor PhoB	NA|401aa|up_2|NZ_AP021891.1_3453868_3455071_+	PRK10966, PRK10966, exonuclease subunit SbcD; Provisional	NA|1049aa|up_1|NZ_AP021891.1_3455067_3458214_+	PRK10246, PRK10246, exonuclease subunit SbcC; Provisional	NA|395aa|up_0|NZ_AP021891.1_3458339_3459524_+	PRK10091, PRK10091, MFS transport protein AraJ; Provisional	NA|303aa|down_0|NZ_AP021891.1_3459768_3460677_-	PRK09557, PRK09557, fructokinase; Reviewed	NA|304aa|down_1|NZ_AP021891.1_3460801_3461713_+	PRK00321, rdgC, recombination associated protein; Reviewed	NA|28aa|down_2|NZ_AP021891.1_3461790_3461874_-	NA	NA|95aa|down_3|NZ_AP021891.1_3462359_3462644_-	PRK10579, PRK10579, pyrimidine/purine nucleoside phosphorylase	NA|226aa|down_4|NZ_AP021891.1_3462715_3463393_-	PRK10481, PRK10481, hypothetical protein; Provisional	NA|64aa|down_5|NZ_AP021891.1_3463650_3463842_-	PRK10380, PRK10380, hypothetical protein; Provisional	NA|175aa|down_6|NZ_AP021891.1_3463891_3464416_-	PRK03731, aroL, shikimate kinase AroL	NA|155aa|down_7|NZ_AP021891.1_3464592_3465057_-	PRK00124, PRK00124, YaiI/YqxD family protein	NA|270aa|down_8|NZ_AP021891.1_3465176_3465986_+	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed	NA|372aa|down_9|NZ_AP021891.1_3466002_3467118_-	PRK10245, adrA, diguanylate cyclase AdrA; Provisional
GCF_011404215.1_ASM1140421v1	NZ_AP021891	Escherichia coli strain 2017.01.04CC	10	3827445-3827580	4	PILER-CR	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,WYL,RT	Orphan	TGAATCACCAATATTGAAAA	20	0	0	NA	NA	NA	2	2	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,WYL,RT	NA,NA	NA|126aa|up_9|NZ_AP021891.1_3818151_3818529_+	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed	NA|281aa|up_8|NZ_AP021891.1_3818535_3819378_+	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical)	NA|160aa|up_7|NZ_AP021891.1_3819455_3819935_-	PRK10769, folA, type 3 dihydrofolate reductase	NA|621aa|up_6|NZ_AP021891.1_3820126_3821989_-	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|177aa|up_5|NZ_AP021891.1_3821981_3822512_-	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF	NA|444aa|up_4|NZ_AP021891.1_3822619_3823951_-	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|96aa|up_3|NZ_AP021891.1_3824009_3824297_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_2|NZ_AP021891.1_3824293_3825580_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_1|NZ_AP021891.1_3825630_3826572_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_0|NZ_AP021891.1_3826586_3827357_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|down_0|NZ_AP021891.1_3827829_3829344_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|down_1|NZ_AP021891.1_3829374_3830517_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|down_2|NZ_AP021891.1_3830645_3831863_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|518aa|down_3|NZ_AP021891.1_3831936_3833490_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|down_4|NZ_AP021891.1_3833598_3834384_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|down_5|NZ_AP021891.1_3834389_3834980_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_6|NZ_AP021891.1_3835188_3835584_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|1074aa|down_7|NZ_AP021891.1_3835845_3839067_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_8|NZ_AP021891.1_3839084_3840233_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|274aa|down_9|NZ_AP021891.1_3840688_3841510_-	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]
GCF_011404215.1_ASM1140421v1	NZ_AP021891	Escherichia coli strain 2017.01.04CC	11	3835018-3835159	10	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,WYL,RT	Orphan	GCTGGAGAGCAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGA	52	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,WYL,RT	NA,NA	NA|96aa|up_9|NZ_AP021891.1_3824009_3824297_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_8|NZ_AP021891.1_3824293_3825580_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_7|NZ_AP021891.1_3825630_3826572_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_6|NZ_AP021891.1_3826586_3827357_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|up_5|NZ_AP021891.1_3827829_3829344_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|up_4|NZ_AP021891.1_3829374_3830517_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|up_3|NZ_AP021891.1_3830645_3831863_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|518aa|up_2|NZ_AP021891.1_3831936_3833490_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|up_1|NZ_AP021891.1_3833598_3834384_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|up_0|NZ_AP021891.1_3834389_3834980_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_0|NZ_AP021891.1_3835188_3835584_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|1074aa|down_1|NZ_AP021891.1_3835845_3839067_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_2|NZ_AP021891.1_3839084_3840233_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|274aa|down_3|NZ_AP021891.1_3840688_3841510_-	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]	NA|305aa|down_4|NZ_AP021891.1_3841676_3842591_-	PRK10768, PRK10768, ribonucleoside hydrolase RihC; Provisional	NA|317aa|down_5|NZ_AP021891.1_3842656_3843607_-	PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed	NA|150aa|down_6|NZ_AP021891.1_3843608_3844058_-	PRK15095, PRK15095, FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional	NA|165aa|down_7|NZ_AP021891.1_3844182_3844677_-	PRK00376, lspA, lipoprotein signal peptidase	NA|939aa|down_8|NZ_AP021891.1_3844676_3847493_-	PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed	NA|314aa|down_9|NZ_AP021891.1_3847535_3848477_-	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase
